Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CRLF3 Gene 0 218.99 222.85 173.99 226.40 269.05 166.86 152.04 181.87 120.68 146.92 148.66 193.08 178.14 182.22 171.14 144.52 154.84 86.31 59.42 133.86 33.67 64.01 55.86 2 324238 Transcript 0 125.28 107.42 98.86 107.86 170.46 127.52 92.36 104.69 68.73 84.44 171.55 163.29 131.27 218.79 151.34 153.59 173.71 59.78 47.60 78.03 42.76 47.01 54.10 3 ER1a ExonRegion 1 42.13 8.53 10.37 6.67 17.49 41.97 15.90 8.82 5.17 6.01 41.09 5.38 10.48 38.13 33.36 48.48 56.36 11.33 12.35 9.83 16.14 7.65 15.32 4 E1a_E2a KnownJunction 1 21.34 3.35 21.35 5.49 4.33 13.74 8.44 19.63 11.08 5.67 97.08 0.00 18.83 71.58 61.69 28.80 137.91 16.95 9.60 9.08 38.61 18.25 20.49 5 ER2a ExonRegion 0 61.92 36.14 60.80 58.62 102.27 108.31 48.94 88.91 57.15 58.15 168.07 139.42 104.42 200.03 140.15 184.04 172.92 65.27 52.31 53.18 55.27 40.68 56.95 6 E2_Da NovelBoundary 0 25.04 32.49 42.90 49.81 34.63 26.80 67.83 129.38 66.55 68.90 12.32 25.21 6.17 19.72 24.11 36.91 4.68 46.30 31.34 44.61 5.13 9.37 23.30 7 E2a_E3a KnownJunction 0 65.79 21.25 75.16 45.25 75.98 114.82 71.63 73.11 26.85 48.65 137.88 243.68 143.50 263.05 224.98 171.92 156.80 39.09 13.08 48.45 50.29 45.19 39.52 8 I2 Intron 0 36.61 40.73 38.38 60.45 142.70 56.06 61.86 76.97 51.36 52.80 4.45 9.75 14.50 5.32 11.28 13.63 9.11 22.69 19.76 35.20 3.96 4.38 9.52 9 I2_SR1 SilentIntronRegion 0 22.16 16.74 27.15 35.88 117.22 45.44 37.04 54.56 34.43 37.16 3.40 6.94 11.64 4.74 11.31 10.93 6.07 15.56 12.48 18.88 4.76 3.83 7.51 10 I2_AR1 ActiveIntronRegion 0 50.04 61.74 60.70 96.20 185.71 88.23 94.22 139.05 93.95 91.42 5.21 13.79 20.53 6.84 11.20 17.28 11.71 36.51 32.09 64.21 4.60 5.89 13.21 11 I2_SR2 SilentIntronRegion 0 39.56 46.31 33.84 58.00 137.00 45.45 61.55 57.77 39.33 42.12 4.80 9.51 13.16 4.88 11.33 13.53 9.88 20.00 18.04 30.50 3.02 3.93 8.89 12 E3_Aa NovelBoundary 0 24.45 76.70 59.87 66.89 127.25 38.56 95.74 104.00 69.62 69.38 4.58 0.00 13.64 6.71 17.55 11.71 11.97 15.09 8.47 51.26 16.06 5.69 0.00 13 ER3a ExonRegion 0 128.29 130.15 81.17 76.66 209.83 169.75 153.56 84.81 61.21 87.83 225.23 206.68 148.96 255.34 195.27 187.31 237.70 65.70 67.25 87.50 57.80 57.68 66.11 14 E3_Da NovelBoundary 0 43.86 83.21 95.15 139.04 112.31 31.91 59.84 121.87 95.57 98.15 12.69 36.91 6.17 7.18 25.09 22.90 31.70 29.02 30.21 79.64 5.56 8.70 11.78 15 E3a_E4a KnownJunction 0 94.46 30.59 55.26 36.86 78.27 79.56 55.47 53.11 34.55 36.00 209.05 138.20 153.07 207.25 143.89 158.16 212.62 38.39 46.21 51.13 61.22 56.82 52.07 16 I3 Intron 0 38.25 51.24 37.02 68.10 122.23 42.34 69.65 77.05 42.86 51.12 4.66 11.15 21.85 4.32 15.33 15.22 14.25 15.61 17.59 34.18 2.88 3.35 9.14 17 I3_SR1 SilentIntronRegion 0 38.40 51.44 37.17 68.36 122.70 42.50 69.91 77.35 43.03 51.32 4.68 11.19 21.94 4.33 15.39 15.28 14.30 15.67 17.66 34.31 2.89 3.36 9.18 18 E4_Aa NovelBoundary 0 52.23 41.37 61.59 76.58 85.48 18.11 84.62 104.86 53.33 67.26 5.11 25.96 19.32 2.47 13.35 12.22 12.90 7.63 12.61 67.56 5.75 0.00 16.82 19 ER4a ExonRegion 0 157.73 57.02 95.98 118.27 180.84 117.16 85.33 124.16 86.68 106.49 243.57 228.22 208.07 241.82 162.49 182.57 241.30 54.33 45.36 97.17 45.11 66.75 65.48 20 E4_Da NovelBoundary 0 17.63 56.37 56.77 128.29 211.29 70.53 99.50 87.20 77.40 119.70 0.00 30.76 26.95 4.94 26.70 12.65 16.83 21.80 8.47 64.24 2.66 8.82 22.28 21 E4a_E5a KnownJunction 0 79.35 28.74 31.16 35.53 110.44 99.89 70.93 40.38 42.33 36.75 174.52 235.43 161.35 228.68 159.34 145.86 187.38 26.65 17.04 45.25 21.99 43.78 39.69 22 I4 Intron 0 85.67 270.84 200.44 256.85 351.59 172.17 152.39 211.90 107.35 158.32 17.93 26.67 37.13 31.10 45.83 54.46 31.66 86.65 59.86 124.11 8.76 17.55 27.48 23 I4_SR1 SilentIntronRegion 0 70.85 242.83 181.93 222.44 350.26 156.25 156.55 181.98 93.86 138.72 12.72 24.03 35.37 25.53 35.48 45.78 21.74 57.83 45.36 106.23 3.74 16.16 20.28 24 I4_AR1 ActiveIntronRegion 0 128.76 354.16 255.87 357.90 361.44 219.81 143.32 299.53 147.12 216.11 32.86 34.56 42.70 47.28 75.69 79.78 60.01 169.04 101.63 176.42 23.00 21.74 48.15 25 E5_Aa NovelBoundary 0 90.46 304.16 270.01 402.81 497.88 313.12 247.71 375.17 199.59 317.16 31.17 62.42 69.31 46.32 49.45 81.86 90.79 122.20 103.81 215.85 19.03 19.53 47.38 26 ER5a ExonRegion 0 221.98 325.30 282.25 367.84 436.75 317.84 237.33 295.65 180.44 239.07 231.95 270.37 186.15 299.33 194.54 226.25 219.32 163.51 105.09 225.29 58.48 67.45 89.60 27 E5_Da NovelBoundary 0 197.07 370.33 287.54 423.22 701.87 437.59 345.18 316.35 195.46 271.39 55.59 61.07 86.84 81.94 107.42 47.42 57.97 160.76 94.78 238.92 48.68 15.92 46.86 28 E5a_E6a KnownJunction 0 66.16 17.63 43.76 14.62 100.51 43.38 36.43 38.45 26.94 21.14 142.83 160.70 96.42 203.72 122.38 126.29 119.87 33.45 19.95 11.82 34.41 26.94 47.29 29 E5a_E7a NovelJunction 0 3.33 2.96 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 18.76 0.00 0.00 6.06 3.59 4.02 1.70 0.00 3.26 0.00 0.00 4.35 30 I5 Intron 0 102.93 200.37 212.28 248.24 393.31 162.22 155.45 182.06 99.92 144.40 22.12 49.30 65.59 54.43 63.70 58.38 32.10 67.58 54.55 103.42 10.03 14.98 25.67 31 I5_AR1 ActiveIntronRegion 0 87.69 222.76 131.68 167.91 173.20 119.06 112.06 153.95 84.34 129.73 25.41 41.50 52.49 52.76 72.89 61.58 36.80 71.44 45.06 123.34 10.09 13.28 20.48 32 I5_SR1 SilentIntronRegion 0 85.22 146.08 160.38 129.05 247.00 112.69 78.27 96.38 49.55 62.56 5.43 22.16 50.47 19.30 26.39 28.80 5.66 23.54 45.73 35.21 0.00 6.99 11.33 33 I5_AR2 ActiveIntronRegion 0 121.58 188.58 301.65 348.47 636.62 213.92 211.78 224.98 124.14 173.16 21.75 61.73 81.41 62.16 61.17 60.46 31.94 71.41 65.74 95.61 11.65 18.05 33.31 34 E6_Aa NovelBoundary 0 48.38 141.22 463.44 582.38 277.16 262.18 220.86 367.78 203.12 311.30 36.38 77.28 68.34 61.86 70.83 55.46 53.20 114.16 63.44 132.63 20.76 29.51 39.69 35 ER6a ExonRegion 0 250.89 425.75 318.77 343.97 517.40 270.95 180.40 276.29 177.04 241.15 185.02 202.87 173.21 333.12 200.25 257.39 233.57 157.57 127.85 210.80 64.24 65.84 104.28 36 E6_Da NovelBoundary 1 1015.88 1967.94 481.00 591.63 1311.04 634.52 607.55 549.04 301.33 442.68 76.70 84.03 297.87 133.44 257.99 124.84 90.04 134.81 135.35 402.17 25.33 54.25 90.14 37 E6a_E7a KnownJunction 0 158.47 39.34 37.76 28.80 129.03 113.57 69.25 37.21 33.54 36.91 172.57 82.83 101.94 254.58 126.09 180.81 131.09 42.95 3.86 21.92 23.97 36.01 49.60 38 I6 Intron 0 71.77 172.46 125.06 178.80 252.23 96.37 133.05 126.00 72.93 101.62 16.26 42.40 53.45 22.55 36.00 37.09 29.29 39.51 36.88 99.24 8.21 13.31 24.23 39 I6_SR1 SilentIntronRegion 0 85.15 206.25 144.81 170.64 249.57 136.45 142.59 155.20 81.12 112.28 14.57 36.45 41.05 30.22 44.36 41.16 29.78 26.30 44.32 89.62 6.49 15.69 22.16 40 I6_AR2 ActiveIntronRegion 0 103.57 214.93 147.24 261.04 361.29 118.48 186.56 170.36 106.54 131.26 21.44 73.12 80.17 22.01 37.02 33.49 40.50 26.45 29.92 111.67 5.82 17.56 19.69 41 I6_AR3 ActiveIntronRegion 0 1.59 13.22 15.01 49.06 6.69 5.96 17.21 28.95 21.31 28.67 7.25 4.33 21.11 7.71 4.35 14.86 2.48 8.31 1.59 25.00 3.86 10.94 1.47 42 I6_SR3 SilentIntronRegion 1 55.02 175.99 104.23 185.72 281.46 88.90 145.25 130.83 84.86 113.41 16.13 51.26 62.93 20.29 45.42 29.91 30.19 24.71 25.99 106.53 4.84 18.36 12.33 43 I6_AR4 ActiveIntronRegion 1 91.59 258.47 165.12 227.70 274.16 86.81 151.89 151.57 85.39 137.95 21.20 63.69 59.12 20.27 43.91 41.71 35.44 47.48 35.48 140.77 9.41 18.65 27.52 44 I6_SR4 SilentIntronRegion 0 68.49 186.69 143.47 130.61 222.75 103.23 98.55 127.64 71.64 99.49 17.04 27.69 37.11 31.99 39.32 69.38 37.41 91.69 77.72 103.60 17.56 12.49 50.91 45 I6_AR5 ActiveIntronRegion 0 28.94 26.24 64.45 72.68 65.58 19.24 26.14 62.36 38.69 54.62 17.49 11.61 20.56 17.91 20.25 42.70 43.86 40.54 46.13 26.47 18.43 5.83 30.52 46 I6_AR6 ActiveIntronRegion 0 80.90 112.52 130.98 193.83 310.39 84.76 136.96 124.64 67.66 68.56 22.55 42.81 84.42 36.27 31.91 38.64 30.81 60.77 50.26 123.17 2.69 6.25 29.69 47 I6_AR7 ActiveIntronRegion 0 98.10 150.48 141.72 202.24 362.97 88.18 158.59 141.81 80.39 81.03 20.17 56.66 90.13 35.17 56.01 50.91 35.31 57.20 58.17 120.72 1.92 3.99 23.49 48 I6_AR8 ActiveIntronRegion 0 116.67 178.83 123.15 160.65 431.13 134.55 188.17 128.23 74.72 82.51 23.80 41.94 70.94 34.61 47.51 56.28 49.93 55.32 60.32 138.30 3.03 5.60 28.82 49 I6_SR6 SilentIntronRegion 0 122.05 209.12 109.67 144.69 508.84 178.49 241.84 112.06 64.43 70.15 25.13 48.35 54.72 33.57 39.17 60.43 42.36 53.28 81.23 163.12 4.41 8.33 35.24 50 I6_AR9 ActiveIntronRegion 0 83.73 147.82 82.75 100.39 323.10 127.74 162.76 72.11 42.77 48.85 21.93 38.02 49.69 32.13 45.15 44.30 27.54 38.74 58.73 124.07 4.96 8.46 30.10 51 I6_AR10 ActiveIntronRegion 0 57.22 131.16 110.92 196.76 271.18 106.87 150.29 109.96 58.57 82.01 13.71 28.15 63.04 21.19 26.68 30.01 17.76 42.88 28.26 100.92 8.78 8.83 21.62 52 I6_AR11 ActiveIntronRegion 0 26.74 47.57 73.47 94.06 58.82 34.32 39.65 50.62 47.34 78.34 4.52 23.71 38.98 10.82 26.27 5.56 3.09 7.31 10.43 37.81 2.06 2.92 16.49 53 E7_Aa NovelBoundary 1 53.19 98.80 184.41 204.20 157.81 61.04 96.80 204.06 144.18 189.35 20.11 31.21 116.55 12.24 44.26 36.06 34.60 36.06 35.39 153.15 37.19 12.00 23.73 54 ER7a ExonRegion 0 180.50 153.35 143.34 166.89 174.61 149.06 110.79 172.33 110.60 143.76 205.81 154.75 156.64 261.44 179.24 173.51 187.30 71.82 82.20 123.86 48.62 37.96 72.82 55 E7_Da NovelBoundary 1 181.81 395.26 338.81 458.85 864.69 183.02 298.76 354.51 171.29 249.60 12.06 81.18 139.44 38.32 73.31 101.94 29.36 109.73 69.93 203.45 24.09 29.27 69.83 56 E7a_E8a KnownJunction 0 77.57 62.09 26.14 40.39 118.08 103.12 61.65 51.18 38.02 33.87 208.32 168.05 96.91 265.58 138.82 106.64 174.75 20.69 56.66 25.57 40.65 58.54 41.57 57 I7 Intron 1 43.35 83.90 82.77 137.91 143.66 79.68 101.89 111.12 65.69 93.11 7.88 33.22 41.77 13.28 36.87 42.25 29.21 45.35 38.32 80.80 3.51 11.60 21.90 58 I7_AR1 ActiveIntronRegion 0 38.00 88.37 74.10 86.34 300.70 123.82 222.00 71.75 55.58 58.12 15.52 25.98 52.07 18.32 26.68 28.07 15.62 30.80 27.11 55.26 5.20 5.90 15.25 59 I7_AR4 ActiveIntronRegion 1 59.05 108.98 112.51 200.47 133.43 89.59 92.27 160.61 90.35 135.39 7.69 46.42 51.02 15.67 51.19 60.67 43.42 65.14 54.62 115.50 4.04 17.36 31.18 60 E8_Aa NovelBoundary 0 108.69 224.50 146.80 222.12 406.11 203.06 233.66 204.14 94.56 161.90 16.00 68.57 44.15 29.31 56.25 38.45 87.89 43.32 57.70 124.70 3.15 0.00 31.76 61 ER8a ExonRegion 0 272.62 272.13 199.68 272.01 301.14 169.73 179.38 206.35 139.28 165.17 130.26 212.77 209.12 158.26 187.65 125.84 136.69 89.00 55.18 149.65 24.58 75.68 50.63 62 IG20 Intergenic 0 29.39 53.44 46.46 83.14 87.26 35.97 64.22 55.71 36.01 43.95 5.23 26.27 29.95 10.14 19.37 20.67 15.79 28.24 19.55 56.68 4.86 6.24 12.64 63 IG20_AR6 ActiveIntergenicRegion 0 59.65 137.83 71.68 104.25 162.50 84.29 149.70 78.64 45.70 66.52 11.67 28.20 23.42 18.10 29.26 31.93 27.69 33.68 32.06 88.51 8.13 9.79 13.79 64 IG20_SR3 SilentIntergenicRegion 0 53.44 96.11 82.61 127.28 126.67 58.64 84.02 99.17 56.44 71.18 10.50 23.09 29.38 17.84 32.17 41.28 28.75 63.84 37.17 84.78 11.70 9.17 23.15 65 IG20_AR5 ActiveIntergenicRegion 0 41.39 45.87 50.78 121.98 179.87 72.44 122.47 48.97 37.47 59.77 4.72 62.54 56.02 16.42 33.36 16.84 21.64 15.30 16.28 87.47 0.00 12.96 15.50 66 IG20_AR4 ActiveIntergenicRegion 0 40.59 69.73 76.88 156.20 158.84 53.65 132.15 90.01 72.15 83.51 4.91 78.29 82.18 14.92 29.67 21.02 20.21 22.03 22.19 103.83 1.82 13.37 19.36 67 IG20_SR2 SilentIntergenicRegion 0 7.91 10.51 8.69 28.15 26.83 10.88 21.53 10.67 9.89 10.41 1.29 7.37 6.00 2.67 4.86 4.41 5.23 7.16 4.24 17.85 1.69 1.39 2.25 68 IG20_AR3 ActiveIntergenicRegion 0 11.68 24.43 6.47 20.90 33.04 15.69 20.85 12.26 4.94 7.39 1.53 12.38 17.07 3.36 8.84 7.04 6.13 5.08 6.50 19.30 0.61 0.92 4.12 69 IG20_AR1 ActiveIntergenicRegion 0 9.83 24.82 2.31 14.55 32.71 17.78 52.40 7.60 3.88 6.49 0.00 9.70 11.36 1.11 9.35 1.25 2.76 4.64 8.06 38.53 0.93 1.76 2.48