Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SOCS7 Gene 0 9.64 28.86 34.93 47.43 32.51 128.69 64.29 41.14 51.11 79.66 40.05 25.92 45.98 49.73 19.49 25.67 39.25 110.88 54.80 95.18 27.61 18.64 27.81 2 394354 Transcript 0 11.11 21.25 39.00 35.46 26.99 52.92 64.65 4.76 19.36 68.20 24.01 18.61 13.64 31.20 24.11 20.34 20.48 124.15 48.94 83.16 11.55 19.04 33.29 3 331159 Transcript 0 2.12 20.07 8.72 22.11 25.70 128.60 18.99 36.86 39.28 46.86 0.00 0.72 1.23 1.21 0.84 0.57 1.65 32.51 5.31 37.74 0.03 0.00 0.00 4 ER1a ExonRegion 0 1.16 5.41 14.26 11.21 2.76 35.74 12.11 12.28 18.09 39.98 16.99 5.37 11.05 30.60 10.94 9.85 18.16 48.27 18.59 38.71 18.74 7.28 11.75 5 E1a_E2a KnownJunction 0 13.78 22.17 29.92 39.22 3.65 110.05 34.01 45.47 65.42 108.63 58.70 26.26 41.56 59.33 20.27 25.29 22.81 198.23 60.24 134.10 28.42 24.37 40.12 6 I1 Intron 0 2.92 7.10 5.67 13.57 8.00 6.87 17.36 6.03 3.96 5.53 1.91 2.57 3.50 0.83 2.39 2.78 3.69 4.98 5.42 11.84 1.59 0.31 2.44 7 I1_AR1 ActiveIntronRegion 0 2.61 3.63 6.05 9.67 5.91 8.72 19.26 4.10 3.02 4.72 3.06 2.79 3.47 1.36 1.57 2.33 5.13 2.47 4.09 11.91 2.22 0.48 4.05 8 I1_SR2 SilentIntronRegion 0 2.95 5.40 6.10 14.09 8.73 8.12 19.50 5.94 4.67 4.86 1.68 5.26 4.82 1.05 1.40 2.61 1.94 3.67 6.40 11.64 2.20 0.19 2.39 9 I1_AR2 ActiveIntronRegion 0 10.58 0.78 16.59 22.75 14.30 26.80 36.92 6.98 2.57 9.09 3.87 1.83 3.79 2.81 1.79 4.57 0.00 9.52 3.68 10.31 1.10 0.00 5.99 10 I1_AR3 ActiveIntronRegion 0 2.99 6.29 5.15 13.85 13.44 7.84 20.88 8.63 3.84 7.66 2.78 1.36 4.45 1.46 3.20 1.08 4.48 6.87 3.92 12.48 1.50 0.11 1.55 11 I1_SR3 SilentIntronRegion 0 3.37 11.49 6.41 15.51 8.32 4.91 17.90 6.79 4.90 7.47 2.37 2.67 4.52 0.51 2.05 3.29 3.19 3.56 2.62 11.99 1.81 0.63 2.84 12 E2_Aa NovelBoundary 0 0.00 0.00 10.08 18.88 0.00 16.69 17.31 6.70 1.30 5.78 0.00 0.00 0.00 0.00 0.00 4.10 0.00 1.66 4.80 15.40 2.59 0.00 0.00 13 ER2a ExonRegion 0 12.02 33.73 48.20 50.36 21.41 104.22 60.56 48.56 74.01 115.08 45.65 17.98 29.80 57.54 18.97 20.58 26.66 200.61 91.93 141.47 38.51 19.55 54.17 14 E2a_E3a KnownJunction 0 0.00 49.27 64.16 77.95 22.16 71.44 65.01 70.77 85.79 139.25 23.95 0.00 0.00 24.78 15.45 14.44 4.77 182.15 60.05 97.03 19.77 2.94 30.47 15 E2a_E5a NovelJunction 1 6.59 0.00 3.08 3.60 0.00 0.00 12.19 2.09 7.35 1.67 20.85 7.65 52.43 58.63 0.00 28.11 30.39 15.13 0.00 12.02 16.31 10.16 3.76 16 I2 Intron 0 2.55 7.15 5.82 11.51 5.50 6.41 17.32 5.23 3.00 5.65 0.73 1.12 3.99 0.12 0.93 1.82 2.49 6.07 4.06 11.40 1.56 0.44 2.43 17 I2_SR1 SilentIntronRegion 0 2.55 7.16 5.82 11.52 5.50 6.41 17.33 5.24 3.00 5.65 0.73 1.12 3.99 0.12 0.93 1.83 2.50 6.08 4.07 11.42 1.56 0.44 2.43 18 E3_Aa NovelBoundary 0 3.78 16.44 12.65 17.95 3.74 0.00 12.37 2.55 6.02 9.99 2.68 0.00 14.12 0.00 0.00 0.00 0.00 9.53 4.80 20.07 0.00 0.00 3.59 19 ER3a ExonRegion 0 8.35 40.77 52.63 66.34 23.19 100.54 66.46 54.54 79.74 119.94 36.08 10.39 21.66 22.89 12.85 13.36 12.51 189.90 70.50 133.80 35.30 20.44 36.78 20 E3a_E4a KnownJunction 0 0.00 27.96 10.38 15.72 31.32 134.30 6.45 26.99 44.50 43.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.01 0.00 29.59 0.00 0.00 0.00 21 E3a_E5a KnownJunction 0 11.11 21.25 39.00 35.46 26.99 52.92 64.65 4.76 19.36 68.20 24.01 18.61 13.64 31.20 24.11 20.34 20.48 124.15 48.94 83.16 11.55 19.04 33.29 22 I3 Intron 0 2.39 5.29 5.16 10.33 9.99 17.84 12.73 12.82 11.66 9.66 0.22 3.23 2.28 0.97 1.25 1.34 1.87 6.34 9.37 22.14 1.50 0.47 1.00 23 I3_SR1 SilentIntronRegion 0 2.40 5.31 5.19 10.38 10.03 17.92 12.78 12.87 11.71 9.71 0.22 3.24 2.29 0.98 1.26 1.35 1.87 6.37 9.41 22.23 1.50 0.47 1.00 24 ER4a ExonRegion 0 6.37 23.57 14.21 26.78 22.77 162.81 31.71 57.68 53.40 61.47 0.00 2.16 3.68 1.23 2.53 1.72 4.95 50.16 15.93 56.38 0.09 0.00 0.00 25 E4a_E5a KnownJunction 0 0.00 8.68 1.57 23.84 23.01 88.70 18.81 25.92 19.94 35.73 0.00 0.00 0.00 2.41 0.00 0.00 0.00 17.37 0.00 27.23 0.00 0.00 0.00 26 I4 Intron 0 3.82 15.73 9.88 19.49 16.96 21.43 28.03 12.13 13.59 10.44 0.11 3.44 5.18 1.33 1.51 2.59 3.46 7.69 2.96 22.27 0.77 0.85 1.20 27 I4_AR1 ActiveIntronRegion 0 4.11 17.81 11.10 21.86 18.82 23.08 33.20 13.82 14.77 11.88 0.16 4.54 6.35 1.49 1.62 2.70 4.32 7.31 1.60 24.19 0.50 1.19 1.20 28 E5_Aa NovelBoundary 0 6.59 14.54 10.59 24.84 11.38 17.21 5.12 22.84 10.50 4.59 0.00 0.00 6.82 0.00 0.00 8.20 4.21 14.26 4.80 13.42 0.00 0.00 0.00 29 ER5a ExonRegion 0 16.84 44.74 61.18 58.02 37.13 133.20 98.90 43.11 48.02 116.54 49.36 15.47 40.99 60.77 23.92 31.81 42.16 135.49 61.81 158.99 23.95 30.41 39.92 30 E5a_E6a KnownJunction 0 19.34 60.25 59.13 75.91 62.99 176.83 115.49 45.84 75.23 128.19 57.23 30.16 59.74 93.94 20.03 60.33 47.87 137.79 63.53 184.59 41.51 37.96 36.45 31 ER6a ExonRegion 0 16.37 57.76 75.32 101.01 59.45 240.55 115.87 78.77 88.66 140.31 83.51 62.89 94.97 90.32 34.66 56.26 71.55 203.60 117.50 188.82 52.25 34.54 54.42 32 E6_Da NovelBoundary 0 14.74 9.21 11.41 19.11 41.09 14.03 32.68 9.36 7.52 15.90 2.05 0.00 12.66 0.00 0.00 4.19 9.35 14.26 9.32 18.47 3.15 0.00 3.16 33 E6a_E7a KnownJunction 0 27.93 29.27 87.73 112.44 69.10 269.84 169.45 101.54 133.97 152.15 83.23 90.03 113.30 92.30 57.61 90.06 59.28 199.14 184.19 170.79 54.12 84.75 75.80 34 I6 Intron 0 7.00 8.70 9.49 17.96 12.71 11.14 20.47 12.64 7.08 7.31 2.31 4.54 9.99 0.81 4.18 4.95 5.20 8.81 6.74 14.51 2.48 1.36 3.17 35 I6_SR1 SilentIntronRegion 0 6.48 6.23 9.37 17.84 12.14 10.44 20.05 13.28 6.62 6.79 2.28 4.79 10.36 0.86 4.55 5.59 5.41 9.57 7.27 14.80 2.78 1.29 3.31 36 I6_SR2 SilentIntronRegion 0 9.75 21.59 10.21 18.73 15.69 14.86 22.75 9.36 9.52 10.03 2.43 3.27 8.13 0.57 2.29 1.66 4.15 4.89 4.01 13.07 0.92 1.75 2.46 37 E7_Aa NovelBoundary 0 0.00 15.39 12.36 30.20 15.96 17.66 20.58 11.17 6.63 19.10 2.47 6.30 0.00 0.00 4.70 12.65 4.77 10.90 20.99 12.27 7.17 0.00 4.35 38 ER7a ExonRegion 0 21.59 67.30 85.10 145.99 85.02 263.40 166.88 108.87 114.45 154.80 90.13 84.58 134.23 102.00 45.88 59.97 99.05 182.50 120.87 181.72 62.71 53.41 61.53 39 E7_Da NovelBoundary 0 12.89 33.35 40.21 58.57 11.97 19.36 59.66 48.06 20.75 28.39 4.90 0.00 0.00 0.00 10.38 7.78 4.39 8.37 26.82 32.85 8.77 5.76 3.59 40 E7a_E8a KnownJunction 0 28.60 50.65 77.94 140.28 70.37 230.21 141.19 109.26 133.16 144.17 69.81 102.78 146.26 116.78 19.53 45.97 59.09 152.59 68.71 128.60 47.75 32.39 51.82 41 I7 Intron 0 7.67 12.03 16.06 27.23 20.51 15.75 24.88 12.74 9.41 12.94 1.96 3.26 5.14 1.42 4.36 4.80 2.78 8.70 9.09 13.82 2.43 1.46 3.74 42 I7_SR1 SilentIntronRegion 0 11.27 15.10 27.12 41.25 24.86 24.33 33.79 17.54 12.08 20.55 2.15 1.32 5.98 1.60 8.24 6.99 5.31 15.25 15.37 17.12 2.46 2.32 2.57 43 I7_AR1 ActiveIntronRegion 0 21.40 15.72 27.94 41.90 48.10 34.84 42.48 26.39 17.78 20.24 2.30 6.59 9.89 1.62 6.65 11.49 2.45 15.71 18.47 19.61 2.29 2.79 3.90 44 I7_AR2 ActiveIntronRegion 0 6.83 22.56 20.11 37.83 24.81 15.49 29.92 15.35 11.73 14.29 2.08 6.03 4.55 1.31 5.37 7.14 1.91 7.91 12.92 15.33 1.82 1.90 2.19 45 I7_SR3 SilentIntronRegion 0 6.38 9.96 13.52 23.27 17.33 13.49 21.97 10.84 8.19 11.47 1.90 2.79 4.78 1.41 3.68 3.74 2.70 7.65 7.22 12.87 2.53 1.21 4.08 46 E8_Aa NovelBoundary 0 3.78 0.00 10.82 24.81 27.59 6.53 23.45 16.84 7.00 9.08 2.26 6.30 0.00 0.00 0.00 4.10 3.65 14.09 3.67 14.76 0.00 0.00 7.00 47 ER8a ExonRegion 0 24.59 59.63 53.35 102.74 82.73 262.66 128.93 84.90 97.62 127.70 76.56 55.42 131.84 80.39 36.65 48.14 76.11 183.91 106.85 143.77 42.45 44.93 53.12 48 E8_Da NovelBoundary 0 3.78 5.39 13.60 26.90 19.86 28.62 19.43 27.97 8.25 16.12 4.58 12.45 27.27 0.00 4.45 0.00 4.77 17.91 8.56 33.88 5.99 13.59 7.17 49 E8a_E9a KnownJunction 1 0.00 27.03 34.00 53.74 35.06 151.39 102.41 59.76 69.76 102.80 70.97 86.88 85.87 69.10 22.62 11.28 106.22 88.05 70.59 101.05 22.73 21.68 32.35 50 I8 Intron 0 8.30 10.04 15.02 22.62 11.85 31.56 33.17 13.69 7.69 15.79 7.09 2.71 9.11 7.01 3.91 5.27 4.18 15.12 8.47 28.27 3.90 5.80 10.41 51 I8_SR1 SilentIntronRegion 0 10.23 11.56 14.86 20.06 12.57 33.41 33.77 14.25 7.41 15.42 8.74 3.50 8.30 7.13 3.15 4.08 3.59 17.84 7.78 31.06 4.73 6.57 10.99 52 I8_SR2 SilentIntronRegion 0 4.82 7.25 15.42 27.80 10.64 28.54 32.63 12.80 8.14 16.66 4.15 1.32 10.77 6.90 5.42 7.56 5.29 10.24 9.86 23.36 2.40 4.47 9.34 53 E9_Aa NovelBoundary 0 0.00 6.64 3.81 10.12 20.80 47.08 30.30 3.82 5.56 8.81 7.11 6.15 0.00 4.94 0.00 0.00 14.21 13.14 7.53 10.80 2.66 8.51 0.00 54 ER9a ExonRegion 1 14.59 49.86 36.14 76.74 74.30 236.51 137.87 59.19 74.01 103.88 58.92 55.88 128.99 79.79 33.24 45.59 68.51 179.26 80.06 128.29 26.98 24.84 37.65 55 E9_Da NovelBoundary 0 3.70 13.22 9.05 30.27 28.69 11.13 14.13 4.07 5.96 15.66 0.00 6.30 6.82 7.83 4.45 11.45 4.77 17.00 9.04 8.50 0.00 6.00 4.35 56 E9a_E10a KnownJunction 0 11.04 36.97 28.83 38.79 44.14 150.42 95.08 46.74 53.93 91.01 47.70 30.31 41.07 36.14 34.74 41.01 69.10 117.73 47.72 126.62 28.91 5.69 8.54 57 I9 Intron 0 2.53 4.96 6.45 13.77 10.87 15.14 17.12 5.10 4.86 6.77 2.50 3.70 7.00 3.91 2.31 2.86 3.35 9.82 6.15 14.10 3.13 2.59 3.51 58 I9_SR1 SilentIntronRegion 0 2.53 4.96 6.45 13.79 10.88 15.15 17.13 5.11 4.87 6.78 2.51 3.70 7.01 3.91 2.31 2.87 3.36 9.83 6.15 14.12 3.14 2.60 3.51 59 E10_Aa NovelBoundary 0 3.78 12.50 8.81 20.54 21.65 5.05 23.14 8.17 1.39 10.77 4.69 7.35 0.00 2.35 0.00 0.00 13.28 8.00 8.47 19.75 3.15 6.25 16.30 60 ER10a ExonRegion 0 16.22 33.11 30.11 38.72 51.42 186.19 82.22 35.89 56.91 65.70 49.24 35.14 32.10 53.48 16.66 33.79 52.64 113.72 62.66 100.71 24.49 13.75 25.58 61 IG26 Intergenic 0 11.89 36.75 46.09 59.68 35.96 102.47 52.57 33.49 28.23 48.54 17.72 10.63 10.54 17.51 11.12 11.55 14.22 48.07 22.01 42.18 8.83 10.95 12.22 62 IG26_AR1 ActiveIntergenicRegion 0 39.33 117.88 146.85 186.92 115.82 325.42 166.87 106.10 88.87 152.18 59.23 35.04 35.14 58.56 37.16 38.62 47.49 144.11 67.93 127.54 29.43 36.60 40.64