Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLFN11 Gene 0 42.33 2.21 4.06 9.26 17.45 11.96 7.60 12.75 16.69 8.00 123.21 113.51 116.07 148.57 26.75 149.83 128.61 0.15 0.00 6.71 55.46 42.06 20.19 2 441608 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.38 4.33 0.00 3.65 0.00 3.72 0.00 0.00 0.00 0.00 0.00 1.56 0.00 3 498396 Transcript 0 15.61 0.38 0.34 4.46 8.34 6.40 4.89 5.35 10.94 1.99 51.30 85.33 88.60 78.93 10.17 58.95 49.78 0.00 0.00 2.21 6.39 17.49 4.87 4 427966 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 3.04 5.37 6.30 0.00 4.94 0.00 15.12 3.93 0.00 0.00 3.00 0.00 0.00 4.18 5 430814 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.58 0.00 0.00 2.47 0.00 7.43 4.58 0.00 0.00 0.00 0.00 0.00 0.00 6 394566 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 308377 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 6.42 0.00 0.00 7.42 0.00 7.35 20.38 0.00 0.00 0.00 11.74 3.06 0.00 8 442678 Transcript 0 9.31 0.00 0.25 0.55 6.42 1.47 2.91 3.80 4.94 1.61 35.95 17.32 11.26 43.20 4.64 38.04 36.97 0.00 0.00 0.00 30.41 7.08 3.52 9 321335 Transcript 0 0.00 0.00 3.61 5.59 0.00 0.00 0.00 9.98 20.31 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 IG23_AR9 ActiveIntergenicRegion 0 29.72 1.23 3.03 4.77 20.56 6.33 6.27 6.90 11.90 6.53 35.31 73.68 44.31 54.12 14.97 24.30 20.72 0.00 0.00 0.00 5.43 9.12 9.31 11 IG23_SR6 SilentIntergenicRegion 0 22.59 0.45 3.79 4.90 17.96 7.60 6.78 7.26 9.20 5.79 54.96 57.62 26.91 72.75 18.08 37.94 25.99 0.00 0.00 0.00 21.61 6.17 7.27 12 IG23_AR8 ActiveIntergenicRegion 0 37.63 0.55 6.70 7.27 11.49 5.44 8.34 12.45 14.24 4.89 60.66 52.87 50.60 94.85 30.20 44.81 31.39 0.00 0.00 0.00 24.27 9.16 11.11 13 IG23_SR5 SilentIntergenicRegion 0 8.78 0.48 2.51 1.21 3.51 2.39 1.47 0.92 1.72 0.61 12.53 19.36 14.23 29.30 12.31 12.44 5.86 0.00 0.00 0.00 9.67 3.47 1.16 14 IG23_AR7 ActiveIntergenicRegion 0 25.38 1.30 6.92 5.47 14.64 4.68 3.09 4.20 7.04 5.84 34.48 26.80 22.07 35.62 20.56 22.48 15.37 0.00 0.00 0.25 7.44 5.80 3.19 15 IG23_SR4 SilentIntergenicRegion 0 6.49 1.82 2.68 2.34 10.52 1.98 3.56 4.39 5.59 3.29 14.29 32.74 26.49 13.83 8.24 4.80 2.06 0.00 0.00 0.00 0.40 2.88 0.35 16 IG23_AR6 ActiveIntergenicRegion 0 12.96 0.51 9.80 2.90 11.04 8.94 14.89 8.64 5.40 3.44 20.05 63.32 23.45 13.81 9.07 2.97 6.60 0.00 0.00 0.00 2.20 0.00 0.00 17 IG23_AR5 ActiveIntergenicRegion 0 9.57 0.00 4.83 3.90 22.52 7.53 8.37 8.43 2.60 2.45 9.55 37.63 42.35 12.44 2.68 6.31 5.74 0.00 0.00 0.00 3.59 1.67 2.30 18 IG23_AR4 ActiveIntergenicRegion 0 23.01 3.78 3.72 3.75 9.60 3.38 2.97 4.21 4.19 3.35 8.92 34.39 27.62 17.34 9.06 4.51 1.96 0.00 0.00 0.00 1.24 5.25 1.49 19 IG23_SR3 SilentIntergenicRegion 0 18.07 8.13 2.45 5.45 10.50 7.34 6.31 5.05 4.66 1.15 17.10 61.28 29.58 13.37 7.59 8.92 0.76 0.00 0.00 0.00 0.00 6.25 5.87 20 IG23_AR3 ActiveIntergenicRegion 0 12.17 8.13 2.45 5.45 10.03 5.65 4.08 3.17 4.94 1.15 14.17 52.31 21.50 8.80 1.93 5.94 0.00 0.00 0.00 0.00 0.00 5.90 5.87 21 IG23_SR2 SilentIntergenicRegion 0 11.86 1.14 0.51 5.22 12.90 2.41 2.36 3.27 2.91 1.88 15.54 31.30 25.38 6.51 3.20 5.83 4.96 0.00 0.00 0.00 1.01 3.70 1.26 22 IG23_AR2 ActiveIntergenicRegion 0 40.36 1.67 1.74 7.83 13.07 3.68 3.81 6.30 3.89 3.25 32.27 38.89 28.28 19.89 17.40 8.20 7.96 0.00 0.00 0.00 3.38 4.96 1.96 23 IG23_AR1 ActiveIntergenicRegion 0 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 3.43 0.00 11.27 15.93 2.57 24.98 12.56 0.00 0.00 0.00 0.00 0.94 1.89 24 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.38 4.33 0.00 3.65 0.00 3.72 0.00 0.00 0.00 0.00 0.00 1.56 0.00 25 ER1b ExonRegion 0 2.12 0.00 0.66 1.47 0.62 1.83 2.04 1.46 1.62 0.62 28.25 4.33 0.00 35.73 6.92 66.76 29.96 0.28 0.00 2.78 16.61 7.85 17.17 26 E1_Da KnownBoundary 1 29.93 6.58 3.52 7.69 19.86 28.34 26.23 11.34 6.80 3.17 207.53 6.00 5.68 333.51 50.44 559.17 254.98 4.81 0.00 22.24 169.70 60.56 154.76 27 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 4.16 0.00 0.00 2.42 1.24 1.50 54.12 0.00 0.00 20.66 8.90 60.58 60.59 0.00 0.00 3.26 2.29 12.19 13.06 28 E1a_E3a NovelJunction 0 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 7.79 0.00 0.00 7.42 0.00 8.63 27.02 0.00 0.00 0.00 3.15 8.70 0.00 29 E1a_E4b NovelJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 4.50 0.00 0.00 0.00 18.43 0.00 0.00 2.30 4.45 26.06 4.68 0.00 0.00 0.00 12.48 9.37 0.00 30 ER1c ExonRegion 1 14.39 3.25 2.45 5.12 11.24 16.80 15.25 9.54 5.83 3.44 150.53 5.02 2.63 220.17 38.99 362.00 181.81 1.85 0.00 13.02 96.35 44.50 95.85 31 ER1d ExonRegion 1 3.41 1.17 1.84 2.47 5.35 8.88 4.98 5.28 4.09 3.23 61.85 4.05 21.37 61.91 12.17 144.92 80.54 0.84 0.00 7.09 63.83 18.42 38.26 32 E1b_E2a KnownJunction 1 0.00 0.00 2.78 0.00 0.00 0.00 0.00 4.23 3.88 4.06 108.50 0.00 12.82 16.89 6.30 18.29 67.41 0.00 0.00 9.33 78.21 2.82 8.28 33 E1b_E3a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.43 0.00 8.69 0.00 0.00 2.47 4.82 0.00 8.32 0.00 0.00 0.00 8.71 0.00 0.00 34 E1b_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 6.42 0.00 0.00 7.42 0.00 7.35 20.38 0.00 0.00 0.00 11.74 3.06 0.00 35 I1 Intron 0 6.77 0.22 0.20 2.35 3.40 0.91 1.46 1.57 4.98 1.98 29.55 32.23 52.35 61.57 8.23 58.07 55.94 0.00 0.00 2.11 10.70 7.70 6.97 36 I1_SR1 SilentIntronRegion 0 6.79 0.22 0.20 2.36 3.40 0.91 1.46 1.57 4.99 1.99 29.62 32.30 52.46 61.70 8.25 58.20 56.06 0.00 0.00 2.12 10.72 7.72 6.98 37 E2_Aa NovelBoundary 1 13.56 0.00 0.00 0.00 4.33 5.51 11.26 0.00 19.07 3.06 38.06 37.81 100.97 62.28 14.22 76.05 92.57 0.00 0.00 2.49 17.17 11.21 4.35 38 ER2a ExonRegion 1 6.68 0.00 0.22 1.47 13.69 0.11 1.90 12.34 13.37 8.86 209.97 33.45 73.57 145.18 22.24 141.03 169.19 0.87 0.00 11.06 100.72 35.13 24.01 39 E2_Da KnownBoundary 1 16.37 0.00 0.00 5.56 23.01 0.00 6.76 13.88 25.29 10.23 174.20 19.21 76.62 217.02 54.02 247.37 159.42 0.00 0.00 15.02 91.55 70.79 43.11 40 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.58 0.00 0.00 2.47 0.00 7.43 4.58 0.00 0.00 0.00 0.00 0.00 0.00 41 ER2b ExonRegion 1 21.66 0.00 2.03 4.55 9.00 2.26 2.68 12.32 18.89 5.73 148.01 55.09 72.94 212.07 44.57 404.78 153.18 3.70 0.00 7.51 75.39 51.95 100.41 42 E2_Db KnownBoundary 0 46.90 0.00 1.83 1.33 0.00 5.79 0.00 6.61 13.66 0.00 63.70 70.07 62.82 63.98 33.75 98.44 63.58 3.98 0.00 0.00 6.18 12.19 8.28 43 E2b_E3a KnownJunction 1 0.00 0.00 1.83 4.40 0.00 0.00 0.00 0.00 2.66 3.47 55.91 18.91 65.26 83.64 4.45 375.54 49.56 0.00 0.00 3.07 55.29 25.60 106.11 44 ER2c ExonRegion 0 18.78 0.00 0.71 2.02 6.73 1.63 4.01 3.71 12.89 4.18 68.62 82.12 104.54 64.52 16.14 79.29 53.51 1.01 0.00 6.93 15.25 18.31 5.30 45 E2_Dc KnownBoundary 0 14.37 0.00 0.00 1.60 12.14 2.27 10.51 5.91 13.83 6.21 71.86 72.62 115.09 93.12 9.64 80.15 69.00 0.00 0.00 3.13 16.99 23.21 0.00 46 E2c_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 3.04 5.37 6.30 0.00 4.94 0.00 15.12 3.93 0.00 0.00 3.00 0.00 0.00 4.18 47 ER2d ExonRegion 0 15.61 0.38 0.34 4.46 8.34 6.40 4.89 5.35 10.94 1.99 51.30 85.33 88.60 78.93 10.17 58.95 49.78 0.00 0.00 2.21 6.39 17.49 4.87 48 E2_Dd NovelBoundary 1 30.97 2.70 0.00 1.66 6.96 7.67 10.47 4.23 12.56 0.99 50.01 221.62 118.34 114.49 22.87 59.73 63.49 0.00 0.00 2.68 10.75 25.35 11.35 49 I2 Intron 0 17.08 1.17 0.53 2.93 11.56 3.70 3.05 2.23 7.43 2.46 58.48 69.93 53.42 76.87 4.47 42.82 68.48 0.00 0.00 2.45 9.52 10.82 6.77 50 I2_AR1 ActiveIntronRegion 1 17.17 1.18 0.53 2.94 11.63 3.72 3.07 2.24 7.47 2.48 58.81 70.33 53.72 77.28 4.50 43.06 68.87 0.00 0.00 2.47 9.58 10.87 6.81 51 E3_Aa NovelBoundary 0 20.37 3.35 1.54 10.19 0.00 13.17 5.92 4.15 11.14 2.93 65.33 91.23 79.05 100.59 9.39 55.97 79.48 0.00 0.00 0.00 31.07 10.59 7.17 52 ER3a ExonRegion 0 22.45 0.00 1.20 3.68 19.46 7.08 11.30 8.73 9.86 7.67 166.76 88.37 90.63 226.17 37.99 201.34 161.74 0.00 0.00 13.53 88.90 35.53 33.43 53 E3_Da NovelBoundary 0 3.48 0.00 17.00 1.50 0.00 5.28 7.68 7.60 7.96 4.32 4.90 7.50 0.00 12.66 0.00 7.86 12.62 8.04 0.00 11.89 6.05 0.00 0.00 54 E3a_E4b KnownJunction 0 50.60 3.09 0.00 2.73 33.02 13.74 19.87 8.58 16.55 9.48 162.09 72.17 49.51 221.97 18.54 187.47 159.79 0.00 0.00 0.00 92.54 32.51 23.13 55 I3_AR1 ActiveIntronRegion 0 2.77 0.24 0.00 0.24 0.64 0.00 1.57 0.29 1.09 0.00 7.81 14.90 24.45 6.08 0.59 2.47 3.05 0.00 0.00 0.00 0.79 1.98 1.05 56 ER4a ExonRegion 0 9.31 0.00 0.25 0.55 6.42 1.47 2.91 3.80 4.94 1.61 35.95 17.32 11.26 43.20 4.64 38.04 36.97 0.00 0.00 0.00 30.41 7.08 3.52 57 ER4b ExonRegion 0 44.42 2.75 3.86 6.95 18.48 14.39 13.82 18.39 26.64 10.45 276.32 149.72 144.46 317.57 41.72 310.51 280.21 0.00 0.00 12.98 145.99 83.93 38.63 58 E4_Ac KnownBoundary 1 47.12 0.00 2.99 5.59 4.33 5.00 24.95 21.44 24.62 11.77 255.17 191.16 161.19 318.68 19.66 243.53 342.87 0.00 0.00 3.20 178.72 64.91 40.89 59 E4_Da KnownBoundary 0 13.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 64.23 45.46 48.86 42.56 0.00 56.31 80.04 0.00 0.00 0.00 31.20 14.27 8.28 60 E4_Db KnownBoundary 0 11.11 0.00 1.24 3.20 0.00 0.00 0.00 7.89 19.73 6.72 56.59 73.22 39.77 60.80 10.51 162.44 130.90 0.00 0.00 3.00 80.06 48.31 15.62 61 ER4c ExonRegion 1 37.28 0.08 4.19 5.29 2.16 5.36 12.22 20.14 32.49 10.41 288.97 200.82 174.97 349.81 26.56 303.61 383.28 0.00 0.00 7.36 169.60 84.30 43.26 62 ER4d ExonRegion 1 25.40 0.00 2.45 5.45 10.70 5.50 3.97 20.74 37.05 9.18 284.14 251.11 178.22 368.68 31.91 326.93 396.11 0.00 0.00 12.77 176.30 104.18 41.11 63 ER4e ExonRegion 0 54.64 2.49 5.12 11.84 11.64 20.61 8.57 29.52 42.45 22.07 311.06 298.94 287.63 399.13 52.62 428.49 360.83 0.98 0.00 14.67 167.18 105.49 57.06 64 E4_Dc KnownBoundary 0 28.15 0.00 4.17 5.43 3.99 2.84 6.36 6.12 19.76 10.45 74.86 52.97 61.20 87.47 34.74 158.93 106.31 0.00 0.00 8.56 58.38 36.31 24.16 65 E4c_E4d KnownJunction 0 0.00 0.00 3.61 5.59 0.00 0.00 0.00 9.98 20.31 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 E4_Ad KnownBoundary 0 22.67 0.00 1.51 5.66 7.98 16.64 0.00 6.28 20.43 8.00 148.51 48.62 71.75 121.67 20.77 140.39 204.02 0.00 0.00 2.88 69.44 35.21 8.28 67 ER4f ExonRegion 0 40.21 0.00 6.54 9.54 8.03 17.42 2.65 17.86 39.73 17.20 241.29 215.75 185.26 311.29 45.94 317.52 300.93 1.85 0.00 12.06 147.65 71.19 34.26 68 ER4g ExonRegion 0 66.93 4.35 7.76 20.29 31.80 18.53 12.06 31.32 37.75 17.81 321.55 330.46 334.41 357.08 46.01 324.17 330.52 0.22 0.00 20.52 127.72 101.28 45.06 69 E4d_E5a KnownJunction 0 52.16 9.21 5.14 12.19 7.72 29.59 14.97 32.08 35.56 18.10 291.81 349.76 385.36 324.92 27.81 261.21 299.39 0.00 0.00 20.96 128.56 70.48 42.17 70 E5_Aa NovelBoundary 1 3.11 0.00 0.00 1.63 0.00 2.27 0.00 0.00 1.56 0.00 21.58 30.91 68.66 19.72 5.93 3.76 22.25 0.00 0.00 0.00 5.44 12.37 0.00 71 ER5a ExonRegion 0 50.24 5.77 6.68 10.68 34.29 34.03 11.37 27.56 37.26 20.04 279.54 368.44 349.03 347.03 46.98 364.97 301.02 0.00 0.00 20.27 136.83 104.52 42.02 72 E5_Da NovelBoundary 1 7.56 0.00 0.00 1.76 4.33 2.90 0.00 0.00 0.00 0.00 36.43 42.76 98.05 67.28 4.45 48.96 46.75 0.00 0.00 0.00 11.86 14.45 4.35 73 E5a_E6a KnownJunction 1 65.05 18.09 4.76 20.44 42.53 41.06 9.67 34.67 31.77 21.01 209.21 460.35 258.42 286.60 81.96 526.19 213.84 0.00 0.00 5.88 76.30 139.24 42.34 74 I5 Intron 0 6.65 0.37 0.23 1.07 3.27 0.60 1.06 0.94 1.07 1.03 32.51 56.02 74.81 35.60 3.87 35.60 36.95 0.00 0.00 2.60 5.87 7.80 1.56 75 I5_SR1 SilentIntronRegion 0 6.74 0.38 0.24 1.09 3.32 0.61 1.08 0.95 1.09 1.04 32.97 56.67 75.70 36.03 3.92 36.10 37.47 0.00 0.00 2.64 5.96 7.91 1.58 76 E6_Aa NovelBoundary 1 6.22 0.00 0.00 3.83 0.00 2.61 1.94 4.68 1.53 0.00 22.16 119.14 122.23 30.49 15.70 63.32 17.30 0.00 0.00 0.00 0.00 16.35 4.35 77 ER6a ExonRegion 0 51.55 2.56 4.17 9.87 17.23 14.95 6.88 11.61 16.33 10.20 131.57 156.99 117.61 168.08 29.41 182.63 143.97 0.08 0.00 6.13 56.07 44.78 23.56 78 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79 ER7a ExonRegion 0 40.17 1.87 3.80 8.03 15.59 9.61 6.37 8.16 10.31 4.68 50.44 40.15 53.94 64.71 19.88 65.11 51.36 0.03 0.00 2.08 22.81 21.80 7.51 80 ER7b ExonRegion 0 13.61 0.00 0.00 0.97 6.50 0.00 0.38 1.73 0.00 0.16 0.00 4.33 6.03 0.00 2.90 0.00 3.77 0.00 0.00 0.00 0.00 1.49 0.00 81 IG22_AR5 ActiveIntergenicRegion 0 75.99 2.83 10.39 13.68 94.81 6.82 22.46 37.10 18.82 10.92 26.73 133.42 88.23 38.49 74.24 33.15 21.46 0.00 0.00 0.25 9.47 44.78 11.26 82 IG22_SR3 SilentIntergenicRegion 0 39.41 0.00 0.00 0.00 49.82 5.94 12.86 0.00 0.00 0.00 15.65 94.42 149.63 23.98 32.47 12.03 10.69 0.00 0.00 0.00 3.57 11.81 9.51 83 IG22_AR4 ActiveIntergenicRegion 0 42.16 2.76 2.48 10.11 213.59 30.45 47.15 14.77 16.94 7.48 18.96 151.84 280.90 65.51 31.11 40.38 21.91 0.00 0.00 0.00 8.31 48.72 19.05 84 IG22_AR2 ActiveIntergenicRegion 0 69.60 5.56 6.12 11.94 122.76 16.17 37.57 23.60 23.15 7.13 92.24 345.36 433.65 163.20 89.92 157.88 92.08 0.19 0.00 0.87 108.15 95.15 75.28 85 IG22_AR1 ActiveIntergenicRegion 0 81.94 7.52 7.96 23.61 192.33 26.65 58.26 34.72 38.43 14.23 133.05 423.49 502.65 256.03 91.39 248.59 143.93 0.00 0.00 1.69 200.58 144.53 124.56