Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CRKRS Gene 0 62.61 77.46 67.08 73.97 74.51 69.47 113.96 56.61 65.49 71.46 226.14 182.74 154.47 198.73 106.63 162.45 185.42 88.91 59.75 130.21 96.18 98.63 82.34 2 300647 Transcript 0 3.78 0.00 4.60 5.26 0.00 14.57 10.29 8.09 7.22 7.71 29.30 9.45 30.27 33.82 13.66 24.35 12.67 6.36 9.27 23.07 13.37 6.95 5.80 3 430627 Transcript 1 20.15 21.84 20.64 21.28 11.04 40.26 20.09 27.85 30.58 33.36 164.25 69.02 41.88 117.84 91.48 160.30 70.87 62.39 57.70 34.77 59.92 49.60 56.85 4 447079 Transcript 0 26.74 11.17 8.18 21.52 8.08 28.59 20.25 15.06 18.69 29.84 93.60 55.31 51.75 69.32 46.57 72.13 71.83 43.24 29.35 32.38 52.45 56.41 49.98 5 ER1a ExonRegion 1 0.39 4.13 11.95 24.96 12.36 39.98 22.75 23.89 12.82 14.60 64.12 4.89 7.70 115.21 21.91 65.31 91.22 44.28 38.43 28.31 56.35 23.85 54.41 6 E1_Ab KnownBoundary 0 0.00 0.00 13.81 17.65 0.00 0.00 0.00 7.39 9.00 21.68 17.21 12.60 6.82 96.00 38.94 54.77 39.74 103.80 25.79 25.31 30.83 6.25 53.35 7 ER1b ExonRegion 0 26.75 22.24 47.49 43.92 40.83 54.91 78.07 45.51 74.26 65.30 216.42 129.16 136.25 248.23 78.85 198.98 225.50 139.57 82.79 156.26 122.14 78.66 101.34 8 E1a_E2a KnownJunction 0 43.49 60.71 20.28 23.21 39.90 49.74 84.31 46.87 49.22 38.73 163.83 75.32 60.71 219.03 87.52 178.24 212.15 91.65 43.30 134.74 79.69 66.99 40.46 9 E1a_E2b KnownJunction 0 7.56 0.00 9.20 10.52 0.00 29.13 20.58 16.18 14.44 15.42 58.59 18.91 60.55 67.63 27.32 48.71 25.34 12.73 18.54 46.15 26.75 13.90 11.61 10 E2_Ab NovelBoundary 0 29.86 19.80 7.84 14.45 16.64 10.68 42.00 23.99 27.37 17.78 59.65 28.96 49.51 46.21 4.45 48.02 46.19 39.30 17.69 74.14 25.45 22.72 6.49 11 ER2a ExonRegion 0 30.69 44.74 22.36 27.60 36.79 45.84 79.44 47.10 50.95 38.42 209.72 75.77 79.73 224.13 73.98 170.15 193.10 82.69 54.95 134.04 88.15 59.90 45.52 12 ER2b ExonRegion 0 78.76 75.66 60.44 69.14 81.46 80.74 149.66 78.45 105.29 92.82 345.63 353.32 374.52 278.62 112.81 250.30 281.37 121.22 87.92 214.19 135.77 125.47 126.19 13 E2_Da NovelBoundary 0 26.08 17.43 12.92 16.12 12.65 11.41 25.79 19.35 12.82 6.90 0.00 18.01 14.12 0.00 22.25 15.81 21.88 2.07 33.13 26.40 3.03 0.00 12.89 14 E2a_E3a KnownJunction 0 43.34 24.73 27.73 39.76 55.77 83.02 153.95 38.08 80.32 66.75 251.64 257.78 169.96 280.59 85.91 201.74 277.79 97.75 25.51 158.83 129.24 65.52 80.58 15 I2_AR1 ActiveIntronRegion 1 6.35 6.78 6.13 1.36 8.03 0.00 6.18 5.19 4.67 2.29 5.80 2.89 0.00 0.00 21.92 9.58 1.47 1.85 2.83 0.95 0.00 0.00 3.26 16 E3_Aa NovelBoundary 0 6.45 0.00 7.10 6.49 49.49 0.00 45.53 9.53 4.40 8.62 0.00 0.00 26.95 2.12 9.77 0.00 9.54 4.64 4.61 17.77 5.93 2.82 7.26 17 ER3a ExonRegion 0 52.48 49.87 42.57 59.59 80.12 80.23 133.93 64.26 73.92 68.03 245.48 264.51 209.36 304.35 102.15 228.72 252.23 126.37 67.40 170.64 139.89 84.09 108.46 18 E3a_E4a KnownJunction 0 85.27 22.63 58.57 87.17 108.74 86.31 157.04 61.53 77.75 82.52 267.59 340.31 241.70 394.96 136.97 238.91 289.57 100.15 50.26 195.52 123.18 114.32 103.03 19 ER4a ExonRegion 0 53.71 53.18 48.27 74.99 92.70 80.02 153.91 69.93 76.25 60.36 315.93 379.82 221.50 322.84 110.95 215.22 255.21 89.04 49.12 165.17 118.45 111.62 99.26 20 E4a_E5a KnownJunction 1 75.20 95.18 56.74 81.97 101.61 111.07 233.40 73.65 80.09 66.00 305.55 345.86 125.48 268.82 108.91 182.43 318.47 92.81 63.44 169.64 119.48 133.80 117.46 21 ER5a ExonRegion 0 51.75 84.07 56.30 84.71 129.89 90.92 188.35 78.02 95.70 89.54 376.01 494.98 276.99 273.48 120.53 199.41 293.41 83.78 61.16 194.85 111.06 149.04 115.71 22 E5_Da NovelBoundary 0 10.15 6.12 8.69 27.07 3.57 4.66 17.71 16.55 8.56 7.15 0.00 12.30 0.00 0.00 0.00 12.22 0.00 4.60 32.47 8.82 0.00 0.00 0.00 23 E5a_E6a KnownJunction 1 71.35 63.87 54.37 86.10 117.15 82.62 239.80 75.74 99.97 103.66 468.91 882.59 430.82 295.07 152.79 181.66 344.74 93.85 59.67 174.05 83.89 213.58 137.43 24 ER6a ExonRegion 0 73.55 99.41 65.03 94.89 117.69 97.22 217.90 75.42 117.86 99.62 404.27 543.64 314.18 291.88 129.29 236.00 317.13 105.10 65.23 172.50 91.40 165.12 120.33 25 E6_Da NovelBoundary 0 6.74 7.89 7.78 22.94 8.40 0.00 10.16 6.49 4.98 4.06 0.00 0.00 5.84 0.00 4.45 8.46 3.46 0.00 0.00 26.53 0.00 0.00 0.00 26 E6a_E7a KnownJunction 1 155.58 108.34 67.32 103.42 148.39 123.68 266.92 94.96 130.09 101.40 447.38 710.48 414.26 318.33 118.43 258.14 367.93 109.23 72.57 170.40 158.95 161.66 122.75 27 I6 Intron 0 14.09 6.40 11.02 13.02 10.83 2.53 17.42 6.05 5.37 5.58 0.95 4.61 7.44 0.90 5.42 4.05 4.45 3.45 4.07 11.11 2.01 1.03 3.02 28 I6_AR2 ActiveIntronRegion 0 3.53 4.07 9.80 13.63 8.03 0.00 24.27 6.91 11.12 18.35 0.00 4.33 17.98 0.00 6.77 9.91 0.00 1.85 4.78 17.02 4.41 2.78 2.94 29 I6_AR3 ActiveIntronRegion 0 0.41 1.59 14.10 23.94 9.55 0.00 18.82 9.42 14.63 13.25 0.00 3.31 9.75 0.00 16.33 4.49 1.68 0.51 3.87 12.85 5.10 3.02 4.78 30 I6_SR1 SilentIntronRegion 0 14.45 6.55 11.09 13.03 11.03 2.62 17.48 6.03 5.27 5.35 0.99 4.70 7.30 0.93 5.30 3.93 4.54 3.54 4.10 11.04 1.99 0.97 3.03 31 ER7a ExonRegion 1 101.63 99.54 64.43 89.93 128.53 95.55 196.50 71.38 124.62 101.43 366.37 540.27 313.74 281.26 93.40 274.48 313.53 138.65 62.31 162.22 154.57 159.15 146.16 32 E7a_E8a KnownJunction 0 64.01 93.08 70.04 87.70 126.32 94.89 201.69 34.91 115.71 101.32 363.25 332.66 217.03 258.87 100.75 249.42 295.65 138.04 86.31 155.70 118.18 111.44 120.96 33 E8_Aa NovelBoundary 0 26.15 0.00 5.20 16.55 37.61 0.00 51.32 3.86 4.66 4.11 0.00 6.30 0.00 0.00 0.00 0.00 0.00 2.11 0.00 12.59 0.00 0.00 7.00 34 ER8a ExonRegion 0 78.21 87.84 61.00 92.40 112.09 76.86 186.82 65.73 128.06 123.29 409.76 347.50 288.48 370.47 132.49 282.26 375.14 186.28 101.43 199.67 174.44 158.06 144.01 35 E8a_E9a KnownJunction 0 54.45 77.55 59.99 92.56 124.19 68.88 178.46 69.95 141.87 146.69 469.43 291.85 302.74 457.47 167.01 353.41 370.36 151.51 151.72 220.26 192.44 213.77 186.09 36 E8a_E10a NovelJunction 0 0.00 0.00 1.48 5.76 0.00 0.00 0.00 1.68 1.79 0.00 20.43 12.45 6.82 0.00 4.45 12.30 4.58 10.69 14.21 2.75 5.56 11.94 4.35 37 I8_AR1 ActiveIntronRegion 0 17.54 18.30 3.33 9.93 16.05 0.00 20.99 8.64 0.00 9.67 1.93 8.66 14.07 0.00 7.87 0.00 3.30 0.00 0.00 6.69 2.20 0.89 1.68 38 ER9a ExonRegion 0 52.48 84.81 75.45 89.37 87.68 97.78 146.50 54.20 121.90 115.48 426.65 342.42 329.20 369.72 134.13 284.03 375.96 188.57 105.53 186.47 216.73 170.66 149.54 39 E9a_E10a KnownJunction 0 62.16 92.94 97.87 109.24 54.24 105.17 133.86 69.78 116.43 127.51 390.52 424.49 366.37 337.63 167.63 261.73 364.56 290.22 90.73 192.33 237.78 128.65 152.80 40 ER10a ExonRegion 0 65.41 83.78 94.86 118.07 107.17 115.94 188.61 76.36 107.69 110.93 420.13 295.11 254.62 370.76 151.11 308.24 379.49 235.22 113.75 234.81 203.51 136.50 164.23 41 E10a_E11a KnownJunction 0 94.68 96.43 109.16 110.61 127.08 92.22 203.90 76.60 95.92 98.69 561.88 420.89 371.24 450.12 203.35 413.65 467.04 205.53 183.06 269.09 259.03 188.72 190.96 42 ER11a ExonRegion 0 84.34 72.59 102.64 109.45 91.50 94.59 156.45 83.24 98.13 103.70 398.51 274.07 229.95 353.93 188.96 305.03 367.07 242.42 120.75 223.82 204.89 142.45 158.62 43 E11_Da NovelBoundary 0 34.82 8.81 3.64 9.82 27.42 0.00 24.07 9.32 8.22 2.36 2.47 6.90 0.00 2.12 0.00 14.18 16.92 2.36 0.00 14.45 5.81 5.82 0.00 44 E11a_E12a KnownJunction 0 103.50 86.76 81.66 119.76 52.72 145.60 181.99 76.85 83.97 109.11 364.51 261.99 199.66 240.69 156.87 207.38 349.32 201.71 100.14 165.80 200.41 109.61 133.17 45 I11_AR2 ActiveIntronRegion 0 6.24 0.10 0.67 18.13 6.69 0.00 18.14 1.81 3.77 3.21 1.84 0.00 4.69 0.00 5.80 0.00 3.14 0.46 3.19 14.04 6.39 0.00 2.94 46 I11_AR4 ActiveIntronRegion 0 14.11 1.69 1.23 15.22 5.35 3.67 22.07 3.46 3.91 4.59 1.93 0.00 18.76 0.00 2.90 0.00 6.60 1.85 6.37 6.74 0.00 2.08 5.87 47 ER12a ExonRegion 0 58.41 60.57 79.54 107.75 76.02 118.26 132.51 82.18 99.04 115.89 338.34 238.08 232.47 345.29 211.46 300.02 317.15 226.54 95.91 222.91 230.11 139.64 142.52 48 E12a_E13a KnownJunction 0 69.86 47.95 102.39 108.04 63.07 78.48 105.99 80.22 86.11 116.63 370.20 179.61 275.63 399.20 213.98 320.86 355.87 182.19 74.92 181.91 241.06 117.26 162.02 49 ER13a ExonRegion 0 55.29 53.49 126.58 138.11 75.71 114.37 120.11 104.11 124.50 122.87 390.32 222.83 230.35 368.49 251.71 348.91 330.42 179.65 103.90 236.82 261.78 167.43 163.28 50 E13_Da KnownBoundary 0 36.23 44.47 117.74 130.15 86.76 57.01 79.05 95.99 106.02 138.82 412.84 180.36 142.36 349.93 198.16 331.45 292.38 179.66 98.92 163.50 228.58 171.27 156.56 51 E13a_E14c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER13b ExonRegion 0 41.23 39.40 87.72 99.25 72.10 82.80 98.05 73.37 96.82 111.30 326.00 160.22 175.13 270.55 160.71 231.07 237.40 125.62 86.43 142.28 177.50 122.82 124.18 53 E13_Db NovelBoundary 0 13.04 8.75 22.41 8.36 15.70 10.11 28.62 11.42 10.97 5.43 42.80 43.36 31.33 22.43 18.54 43.75 48.06 9.41 14.40 41.99 22.36 7.96 8.54 54 E13b_E14a KnownJunction 0 21.04 11.71 12.98 32.76 7.05 44.97 29.68 20.04 28.76 45.69 131.56 50.27 47.72 80.35 48.95 93.91 97.24 67.28 45.27 44.10 73.76 72.81 79.56 55 E13b_E14b KnownJunction 1 20.15 21.84 20.64 21.28 11.04 40.26 20.09 27.85 30.58 33.36 164.25 69.02 41.88 117.84 91.48 160.30 70.87 62.39 57.70 34.77 59.92 49.60 56.85 56 I13 Intron 0 15.98 15.07 15.04 29.99 24.08 10.85 52.56 15.44 17.03 13.88 27.84 42.14 38.34 19.82 15.84 25.23 24.93 12.41 10.28 33.11 10.65 22.76 14.47 57 I13_SR1 SilentIntronRegion 0 11.70 6.05 9.02 22.44 10.73 8.31 35.05 7.81 7.06 5.51 31.07 21.94 30.90 23.31 12.10 23.06 29.90 14.78 13.22 28.86 17.69 12.72 13.19 58 I13_AR2 ActiveIntronRegion 1 16.35 22.78 21.53 48.74 20.90 16.61 79.33 10.21 22.79 11.91 47.15 29.12 32.77 22.80 14.82 30.39 42.83 25.05 13.50 54.96 24.63 16.25 13.56 59 I13_AR3 ActiveIntronRegion 0 17.09 14.34 18.53 45.17 25.90 11.82 67.45 9.93 19.07 17.28 30.62 43.38 45.32 24.48 14.40 16.92 26.07 15.12 9.60 43.51 8.65 23.20 9.40 60 I13_SR2 SilentIntronRegion 0 12.28 9.88 10.19 16.13 41.02 7.85 52.12 6.71 11.32 3.12 18.42 41.56 34.82 10.74 15.15 9.02 12.85 4.96 6.18 18.47 4.04 18.09 5.11 61 I13_AR4 ActiveIntronRegion 0 17.81 14.59 19.34 34.60 30.14 19.11 56.84 17.06 20.11 17.45 26.70 68.15 45.06 25.03 24.27 32.21 37.27 17.36 12.92 40.93 16.17 23.52 29.14 62 I13_SR3 SilentIntronRegion 0 9.97 9.82 4.77 10.39 8.94 6.36 26.62 4.33 8.01 3.43 24.90 17.99 12.87 21.76 12.51 24.02 19.40 7.33 9.68 22.51 10.36 15.12 16.56 63 I13_AR5 ActiveIntronRegion 0 33.98 19.85 25.01 54.95 31.31 16.16 67.19 24.61 27.43 22.65 47.50 49.11 48.38 24.07 20.72 43.06 21.41 22.24 15.52 35.43 12.88 35.62 20.05 64 I13_SR4 SilentIntronRegion 0 12.59 13.21 10.94 23.36 24.93 6.87 49.19 12.99 11.37 10.34 22.54 34.13 30.23 18.13 12.24 23.27 22.60 6.61 8.19 26.00 8.11 21.19 9.30 65 I13_AR6 ActiveIntronRegion 0 8.90 18.83 9.30 20.31 20.92 5.86 44.38 16.17 15.89 12.14 17.16 23.82 37.39 15.19 6.79 20.34 11.50 3.96 5.75 22.76 4.97 13.66 9.94 66 I13_AR7 ActiveIntronRegion 0 14.17 18.02 15.80 25.21 24.07 8.57 53.19 21.74 19.65 16.57 24.40 47.68 44.42 14.09 16.10 21.15 23.26 10.40 8.67 34.74 7.38 27.04 9.83 67 E14_Aa NovelBoundary 0 16.52 15.19 31.70 31.66 23.26 7.50 27.29 16.72 23.18 15.02 30.06 29.86 57.14 2.47 4.82 21.19 27.12 16.29 17.32 18.54 27.12 18.61 7.60 68 E14_Ab NovelBoundary 0 106.98 41.44 15.94 32.66 40.07 42.36 38.55 31.59 36.26 52.11 140.61 155.60 176.94 170.05 135.86 168.67 157.36 68.36 47.53 57.91 88.77 109.73 90.83 69 ER14a ExonRegion 0 59.19 21.79 11.55 30.42 17.20 40.80 31.07 25.12 27.30 42.68 149.25 115.66 107.54 127.61 90.77 122.49 118.24 62.43 42.77 53.04 83.58 96.44 70.37 70 ER14b ExonRegion 1 23.67 25.88 45.13 44.13 27.69 40.37 50.53 28.62 41.59 48.77 186.81 56.83 57.39 190.06 132.08 131.51 178.43 81.60 39.92 87.12 104.31 60.95 70.41 71 E14_Ac KnownBoundary 1 36.67 30.52 73.56 56.14 45.08 61.16 75.03 31.01 42.33 38.76 206.74 77.73 25.81 268.94 171.58 147.57 164.28 106.70 37.55 105.46 87.04 60.68 115.84 72 ER14c ExonRegion 1 47.34 42.65 44.98 53.69 57.99 65.31 94.71 28.12 37.49 52.60 195.02 63.32 23.91 183.50 122.12 161.12 150.22 79.68 40.84 79.28 82.12 71.41 73.99 73 E14_Da KnownBoundary 1 61.42 51.44 53.37 90.90 94.91 88.64 148.74 56.31 78.30 74.35 296.76 51.62 52.76 218.61 128.56 214.82 205.52 70.43 111.34 121.95 64.50 100.36 116.44 74 ER14d ExonRegion 0 86.70 123.56 80.34 83.78 89.99 64.07 115.94 52.11 39.10 60.51 141.76 121.08 85.22 92.49 87.79 74.35 81.68 24.29 33.46 77.35 30.56 89.20 36.60 75 ER14e ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00