Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PLXDC1 Gene 0 44.69 10.25 117.87 28.53 30.40 19.42 28.54 33.16 36.83 59.28 0.94 3.47 4.06 3.14 3.74 2.65 2.45 6.05 2.39 10.39 53.15 77.43 46.68 2 461225 Transcript 0 20.55 1.11 0.65 0.11 6.92 1.09 3.76 0.00 0.00 1.13 0.00 0.24 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 1.11 5.10 1.50 3 444911 Transcript 0 0.38 0.57 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.09 3.43 4 441877 Transcript 0 3.48 0.00 7.60 1.53 10.95 0.00 6.62 0.00 0.00 6.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 6.12 4.10 5 415163 Transcript 0 0.00 0.00 1.16 0.00 0.00 0.00 0.44 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 394316 Transcript 0 1.95 0.00 1.57 0.00 2.46 1.17 0.00 0.00 0.74 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.42 0.00 7 394318 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 315392 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 493200 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.72 10 378071 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 444435 Transcript 0 0.51 0.00 0.44 0.03 0.00 1.32 0.32 0.00 0.89 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.56 1.70 0.00 12 ER1a ExonRegion 0 10.30 0.42 0.54 0.34 5.65 0.50 3.43 0.00 0.00 0.28 0.00 0.71 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.73 1.27 0.31 13 E1a_E4a KnownJunction 0 51.34 2.89 1.42 0.00 15.11 2.78 7.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 11.51 4.18 14 ER2a ExonRegion 0 0.77 1.15 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.18 6.85 15 E2_Ab KnownBoundary 0 3.78 2.89 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.24 16 ER2b ExonRegion 0 2.89 0.60 1.29 0.00 2.28 1.61 1.16 1.35 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 2.64 2.94 17 E2a_E4a KnownJunction 0 3.48 0.00 7.60 1.53 10.95 0.00 6.62 0.00 0.00 6.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 6.12 4.10 18 E2a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER2c ExonRegion 0 3.89 0.00 3.92 0.00 5.35 1.10 4.55 0.00 0.00 5.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 2.20 4.50 2.23 20 ER2d ExonRegion 0 0.00 0.00 2.32 0.00 0.00 0.00 0.88 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E2b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.23 0.00 2.27 23 E3_Ab KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 0.00 6.54 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.92 0.00 10.84 24 ER3b ExonRegion 0 3.94 0.45 16.22 0.62 1.18 5.93 1.65 4.94 5.02 6.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.43 17.39 8.00 11.56 25 E3a_E4a KnownJunction 0 2.96 0.00 59.55 3.56 3.48 4.66 4.06 13.18 16.09 18.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 36.39 24.98 30.39 26 ER4a ExonRegion 0 12.97 5.12 92.57 10.16 9.18 4.22 6.97 28.35 33.84 49.58 0.00 0.00 0.00 0.38 0.00 0.00 0.00 3.75 0.91 3.01 81.02 67.24 51.50 27 E4a_E6a KnownJunction 0 20.89 6.71 140.83 10.39 20.54 5.34 18.59 37.91 42.62 66.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 146.66 119.65 49.43 28 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.72 29 E5_Ab KnownBoundary 0 0.00 0.00 2.81 0.00 0.00 0.00 3.36 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.59 30 ER5b ExonRegion 0 0.01 0.00 0.80 0.44 0.55 0.00 1.06 1.13 0.81 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.84 0.48 4.99 31 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER6a ExonRegion 0 35.17 6.34 187.62 25.46 19.64 21.67 28.01 60.96 73.48 112.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.46 1.13 6.09 131.93 135.54 75.62 33 E6a_E7a KnownJunction 0 29.78 9.21 202.57 38.49 23.26 28.28 45.27 95.25 85.16 143.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.56 0.00 0.00 203.00 181.13 69.40 34 ER7a ExonRegion 0 33.23 11.21 196.57 34.01 35.82 25.78 30.19 70.35 75.84 152.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.42 0.00 4.77 169.37 154.18 78.41 35 E7a_E8a KnownJunction 0 76.53 9.14 224.09 33.30 43.21 31.18 28.62 60.83 68.63 144.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.34 0.00 0.00 119.17 182.97 99.70 36 ER8a ExonRegion 0 49.47 6.96 223.60 48.71 27.95 28.30 31.22 87.81 84.79 127.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.12 1.32 8.13 113.03 152.42 106.44 37 E8a_E9a KnownJunction 0 63.49 11.84 322.19 71.15 80.90 11.30 66.60 114.35 96.56 176.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.78 0.00 21.73 190.46 186.27 81.52 38 ER9a ExonRegion 0 35.43 13.67 300.26 65.04 38.94 31.36 32.46 77.57 98.77 138.28 0.00 0.00 0.00 1.43 0.00 0.00 0.00 10.70 0.00 8.58 140.01 172.00 121.92 39 E9_Ab KnownBoundary 0 48.08 18.55 254.16 66.79 39.81 49.74 21.24 53.07 85.97 98.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.12 0.00 2.56 85.07 282.84 148.62 40 ER9b ExonRegion 0 35.08 6.87 261.53 65.78 25.13 36.77 29.60 78.26 92.39 141.54 0.00 2.98 0.00 0.00 0.00 0.00 0.00 7.36 0.00 2.76 121.46 199.64 123.58 41 E9a_E10a KnownJunction 0 48.97 18.62 318.29 67.29 49.32 43.10 44.47 121.74 114.23 195.10 0.00 16.81 0.00 0.00 0.00 0.00 0.00 10.78 0.00 12.27 144.13 179.90 167.40 42 ER10a ExonRegion 0 62.39 22.23 314.71 71.57 70.53 56.79 50.67 92.70 106.34 164.70 0.93 3.38 0.00 0.84 0.00 0.12 0.00 7.95 0.00 6.60 183.79 165.76 142.66 43 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 44 E10a_E12a KnownJunction 0 74.83 46.11 352.06 84.21 120.80 98.75 77.68 81.94 84.08 177.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.92 0.00 8.56 208.50 218.73 155.19 45 ER11a ExonRegion 0 1.02 0.00 0.88 0.05 0.00 2.65 0.64 0.00 1.77 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 1.12 0.77 0.00 46 E12_Aa NovelBoundary 0 9.93 0.00 7.48 6.63 7.56 12.83 23.98 5.09 15.91 8.35 0.00 6.00 0.00 4.77 0.00 4.36 0.00 18.07 3.86 5.43 2.72 0.00 0.00 47 ER12a ExonRegion 0 54.40 14.04 239.23 45.56 42.49 51.22 46.45 72.76 84.82 126.36 0.08 0.00 0.00 5.36 0.00 5.14 0.00 11.29 0.00 18.78 182.94 161.33 138.97 48 E12_Da NovelBoundary 0 34.38 5.46 168.12 34.06 35.99 52.58 20.23 70.89 79.08 79.83 0.00 0.00 0.00 7.06 0.00 3.42 0.00 11.69 0.00 6.52 78.83 106.73 80.50 49 E12_Db NovelBoundary 0 0.00 3.35 5.50 3.06 3.57 5.79 2.25 0.00 17.39 9.24 2.68 0.00 0.00 2.35 0.00 4.36 4.49 2.40 0.00 6.01 0.00 0.00 0.00 50 E12b_E13a KnownJunction 0 54.08 6.38 239.97 27.57 19.69 45.60 28.66 69.54 83.62 116.98 0.00 5.40 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 92.11 193.74 123.61 51 E12b_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.51 0.00 52 ER12b ExonRegion 0 33.77 6.10 196.73 27.01 30.41 45.76 24.67 63.87 84.89 99.88 0.44 6.89 0.00 3.84 0.00 2.84 0.00 7.98 0.00 3.58 92.56 164.98 109.19 53 ER13a ExonRegion 0 64.79 10.81 239.44 45.07 23.10 44.46 29.24 65.51 80.48 103.32 2.31 6.81 0.00 2.38 1.27 0.00 0.00 11.22 0.00 15.39 163.61 147.68 103.82 54 E13a_E15a KnownJunction 0 47.49 6.58 142.99 28.80 26.91 29.87 25.35 43.91 28.96 60.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.51 0.00 0.00 33.42 57.44 50.79 55 E13a_E15b KnownJunction 0 16.60 11.71 125.28 20.08 7.30 30.83 23.98 41.20 57.46 39.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.61 0.00 2.75 118.43 55.60 42.94 56 ER14a ExonRegion 0 1.95 0.00 1.57 0.00 2.46 1.17 0.00 0.00 0.74 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.42 0.00 57 ER15a ExonRegion 0 51.92 3.47 134.85 24.69 44.23 29.58 30.56 46.67 24.69 65.43 3.25 2.04 0.00 0.80 0.00 0.00 1.98 5.39 0.79 5.61 39.85 61.48 56.49 58 E15_Da KnownBoundary 0 88.46 11.97 204.04 37.39 46.10 32.31 29.01 53.56 31.16 76.42 2.16 0.00 0.00 0.00 0.00 0.00 0.00 6.43 4.52 5.88 46.09 101.53 81.69 59 E15a_E16b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 ER15b ExonRegion 0 62.66 2.61 181.25 28.70 34.79 17.90 29.46 38.36 34.85 84.31 1.13 0.56 3.12 1.64 1.12 1.94 0.78 9.64 3.24 10.94 43.87 90.32 65.48 61 E15_Ab KnownBoundary 0 70.38 0.00 210.70 36.69 57.05 29.07 36.30 38.28 41.23 111.02 0.00 0.00 0.00 0.00 0.00 4.36 4.21 10.78 0.00 17.19 50.23 86.65 55.49 62 ER15c ExonRegion 0 61.66 5.05 320.80 53.58 35.99 41.17 36.76 79.54 86.89 140.27 0.00 0.00 0.00 0.00 1.74 1.04 1.98 8.62 0.00 10.71 152.68 122.55 72.34 63 E15b_E16a KnownJunction 0 73.49 6.58 349.81 62.86 36.33 32.25 29.10 103.75 89.96 154.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.44 0.00 6.26 152.40 162.15 73.50 64 E16_Ab NovelBoundary 0 95.42 12.63 299.90 63.06 41.17 51.05 28.93 101.00 86.75 130.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.27 0.00 14.76 171.49 144.69 120.62 65 ER16a ExonRegion 0 73.49 6.43 319.63 59.20 35.75 39.83 28.76 103.85 89.87 148.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.90 0.89 11.40 178.59 158.26 96.44 66 ER16b ExonRegion 0 75.68 13.50 272.45 45.77 39.46 31.74 42.74 75.18 76.47 137.08 0.00 0.00 0.00 0.00 0.00 0.00 1.43 12.12 4.19 13.32 166.03 171.24 117.28 67 E16_Da NovelBoundary 0 6.74 0.00 16.76 1.53 8.32 2.61 0.00 2.01 16.46 6.18 0.00 0.00 0.00 2.30 0.00 0.00 4.39 8.29 8.00 8.44 3.15 0.00 0.00 68 E16a_E17a KnownJunction 0 70.75 19.80 140.39 29.83 47.96 31.86 21.11 44.20 54.20 73.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.63 0.00 3.26 168.90 82.73 76.06 69 E16a_E18a NovelJunction 0 34.82 6.64 115.37 18.21 12.82 5.51 11.92 23.78 28.99 42.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.94 0.00 0.00 25.02 20.08 15.79 70 E17_Aa NovelBoundary 0 3.78 0.00 17.50 6.46 44.14 16.58 9.54 8.50 19.13 14.94 0.00 0.00 0.00 4.59 0.00 4.10 0.00 10.11 4.71 26.01 0.00 0.00 7.51 71 ER17a ExonRegion 0 79.08 10.22 160.42 28.20 54.33 19.15 15.89 47.10 51.94 80.47 0.00 0.00 0.00 0.00 0.00 0.00 0.28 5.54 0.00 1.54 152.97 102.50 86.06 72 E17_Da NovelBoundary 0 13.93 0.00 16.29 4.66 0.00 10.56 6.18 4.76 21.50 8.00 0.00 0.00 0.00 0.00 6.30 8.29 0.00 4.85 0.00 6.52 15.81 8.57 8.02 73 E17a_E18a KnownJunction 0 126.69 3.09 162.03 20.78 58.49 10.51 23.36 39.64 40.71 63.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.55 0.00 0.00 116.94 109.98 81.69 74 Ix Intron 0 15.60 2.90 22.11 12.66 11.99 7.74 8.38 9.79 17.51 16.92 0.13 0.55 0.25 1.31 0.23 1.45 0.64 5.46 1.14 6.77 11.73 18.33 14.20 75 Ix_AR3 ActiveIntronRegion 0 8.52 2.16 14.60 8.91 8.90 5.06 6.36 7.64 15.88 13.42 0.27 0.94 0.00 1.49 0.29 1.47 0.47 5.13 2.03 6.77 14.19 13.84 11.42 76 Ix_AR2 ActiveIntronRegion 0 9.18 2.54 19.78 10.38 9.91 6.57 6.68 8.77 12.34 12.85 0.00 0.00 0.30 0.00 0.12 1.80 0.80 7.86 0.00 6.87 7.98 19.16 8.15 77 Ix_AR1 ActiveIntronRegion 0 45.29 5.89 47.29 27.11 23.68 17.70 16.83 17.82 32.57 34.92 0.00 0.57 0.62 3.07 0.00 1.43 1.06 3.85 1.02 7.19 13.12 30.84 31.18 78 E18_Aa NovelBoundary 0 92.76 3.22 53.40 18.15 35.57 12.89 11.79 10.35 23.15 25.14 0.00 0.00 0.00 0.00 0.00 3.93 0.00 12.10 0.00 2.56 8.09 23.09 20.15 79 ER18a ExonRegion 0 138.68 12.24 253.00 52.66 50.37 48.68 37.53 64.32 74.55 103.64 0.00 1.13 0.00 2.12 0.00 0.00 0.00 6.99 1.01 7.85 136.63 119.03 99.99 80 E18a_E19a KnownJunction 0 197.37 14.14 403.92 80.08 115.37 92.90 60.37 81.86 95.02 115.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.97 0.00 3.13 156.54 86.77 106.87 81 ER19a ExonRegion 0 123.33 22.39 288.67 73.68 83.63 53.63 61.68 90.75 90.17 128.54 0.00 0.44 1.05 2.91 0.86 1.59 1.15 8.43 1.77 8.82 108.30 194.13 110.32 82 E19_Da KnownBoundary 0 3.70 0.00 67.77 19.05 23.77 5.39 43.90 4.81 40.54 32.61 0.00 0.00 0.00 2.47 0.00 4.02 4.58 4.52 0.00 26.59 34.78 60.19 11.35 83 ER19b ExonRegion 0 34.83 11.54 75.35 23.04 26.08 13.01 28.93 18.51 23.75 41.27 1.62 6.24 7.55 5.09 7.05 4.49 4.42 6.12 3.78 14.83 28.35 54.80 27.50 84 ER19c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00