Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 UTP6 Gene 0 96.44 101.83 83.02 74.50 112.39 100.43 75.18 71.69 53.81 96.84 127.24 121.18 86.41 141.01 134.06 134.79 118.94 49.56 60.13 52.30 67.40 65.37 52.07 2 261708 Transcript 1 47.37 68.04 48.34 41.77 83.46 64.35 52.47 44.31 55.75 83.43 184.04 28.51 25.61 103.81 70.30 106.42 186.54 53.83 59.54 60.26 112.88 57.91 38.15 3 490218 Transcript 0 0.04 0.04 0.02 0.05 0.03 0.39 0.01 0.00 0.53 0.52 0.00 0.10 1.03 2.28 2.65 0.67 0.70 0.45 0.68 0.90 0.47 0.02 0.64 4 477128 Transcript 0 7.74 7.21 4.89 4.06 7.14 5.67 8.03 2.93 2.60 2.74 2.78 10.19 12.51 5.50 13.66 7.96 6.54 3.66 6.89 5.70 4.89 3.42 8.07 5 484661 Transcript 1 128.02 108.44 57.45 48.09 74.28 46.44 37.36 42.96 38.91 49.04 13.09 24.08 26.80 22.09 36.09 40.82 7.39 19.45 19.60 23.24 11.84 24.51 25.37 6 477860 Transcript 0 29.24 38.11 7.89 6.25 24.29 31.75 35.88 5.84 5.45 2.34 18.80 25.58 33.29 16.32 37.63 46.36 39.92 10.51 44.25 38.20 18.53 11.50 40.45 7 ER1a ExonRegion 1 101.08 124.93 45.12 40.76 165.11 152.14 117.54 50.98 51.77 85.40 209.11 13.45 28.99 193.60 104.81 217.10 232.48 66.70 80.95 60.46 138.61 68.52 74.46 8 E1a_E3a KnownJunction 1 13.41 48.81 73.33 61.30 45.93 16.58 10.33 53.64 92.97 135.65 331.03 49.52 30.52 98.83 76.89 73.74 305.47 78.18 75.86 99.77 184.78 85.67 17.41 9 ER2a ExonRegion 0 0.00 0.16 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.11 0.00 0.26 4.13 0.00 8.70 0.00 0.00 1.81 0.00 0.00 0.00 0.00 0.00 10 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER3a ExonRegion 0 40.34 101.66 99.37 113.02 102.47 81.20 57.37 106.53 103.17 198.20 414.71 186.12 157.64 435.63 229.20 438.16 363.60 168.84 142.25 126.13 142.31 169.92 157.58 12 E3a_E4a KnownJunction 1 98.24 215.36 132.52 147.70 317.83 183.47 159.91 142.12 110.04 190.02 287.97 254.93 240.24 592.21 380.12 708.36 239.36 141.73 139.86 154.17 101.56 188.91 187.80 13 ER4a ExonRegion 0 67.33 210.09 118.39 149.01 389.70 356.54 249.94 143.54 132.92 221.13 300.38 269.77 231.82 404.14 273.89 536.75 277.75 128.42 144.25 116.77 105.78 152.84 158.30 14 E4a_E5a KnownJunction 0 118.84 296.39 84.59 131.62 390.24 450.42 316.38 124.66 122.60 191.07 286.55 327.41 250.47 250.34 208.17 282.83 325.48 83.74 127.82 111.02 129.73 140.90 63.94 15 ER5a ExonRegion 0 93.92 345.82 127.73 149.93 313.87 402.86 281.42 121.92 111.69 195.57 311.86 403.48 249.73 279.24 193.85 246.62 247.07 119.81 107.58 142.92 127.01 129.74 79.45 16 E5a_E6a KnownJunction 0 146.17 412.03 169.18 146.63 141.60 160.99 203.72 158.01 108.56 211.43 385.15 405.73 342.67 393.90 245.26 299.49 352.13 132.94 97.60 174.69 228.51 151.68 60.18 17 I5_SR2 SilentIntronRegion 0 8.77 0.58 2.74 1.36 5.35 0.00 10.84 6.58 1.24 3.44 0.00 4.12 0.00 0.00 5.39 2.83 0.00 0.00 15.32 0.00 0.00 2.08 2.94 18 ER6a ExonRegion 0 217.21 299.95 177.37 183.11 160.71 154.38 146.66 161.83 134.88 262.12 443.88 429.07 370.41 484.19 280.64 313.68 410.55 145.86 116.07 171.50 224.14 174.71 78.19 19 E6a_E7a KnownJunction 0 224.34 321.26 182.08 209.93 157.73 171.72 148.48 130.04 128.18 247.40 434.48 423.59 244.46 551.48 327.71 270.87 426.37 130.91 122.26 137.93 218.94 168.33 65.73 20 E6a_E8a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER7a ExonRegion 0 191.45 274.60 181.55 200.05 176.18 155.04 128.73 140.06 119.42 237.37 340.76 573.52 321.12 495.76 303.27 328.75 326.27 138.32 118.36 150.40 200.78 167.30 129.03 22 E7a_E8a KnownJunction 1 196.33 274.69 196.03 204.07 186.67 180.80 194.27 148.03 122.48 234.91 242.43 640.26 503.86 426.93 275.05 321.11 264.98 143.14 108.05 137.17 149.93 146.84 109.95 23 E7a_E9b NovelJunction 0 6.96 17.17 11.80 11.45 11.29 2.90 1.85 15.69 4.37 6.04 0.00 12.30 5.84 2.47 0.00 3.25 4.77 4.44 0.00 0.00 2.35 2.27 0.00 24 ER8a ExonRegion 0 119.31 299.33 148.99 148.28 199.13 223.83 175.01 131.04 116.20 204.86 313.42 379.54 222.40 380.66 214.55 322.51 290.04 120.49 104.96 123.55 166.37 136.86 98.88 25 E8a_E9b KnownJunction 0 133.51 333.43 166.61 155.92 331.07 265.76 288.03 89.13 100.66 228.25 363.99 364.62 314.10 411.62 272.95 297.02 372.23 111.10 76.14 93.38 142.89 133.61 68.63 26 ER9a ExonRegion 0 7.74 7.21 4.89 4.06 7.14 5.67 8.03 2.93 2.60 2.74 2.78 10.19 12.51 5.50 13.66 7.96 6.54 3.66 6.89 5.70 4.89 3.42 8.07 27 E9_Ab KnownBoundary 0 0.00 3.29 4.52 4.20 7.39 5.79 16.69 8.42 3.39 2.85 2.16 6.30 0.00 0.00 0.00 7.95 16.83 0.00 0.00 6.01 2.84 0.00 4.35 28 ER9b ExonRegion 0 149.53 268.59 193.16 196.63 342.77 264.28 235.15 180.63 128.03 252.41 338.58 399.89 288.59 427.12 274.94 318.94 353.54 119.72 87.37 148.94 123.15 167.93 106.56 29 E9a_E10a KnownJunction 0 198.92 268.70 222.67 227.68 376.74 238.73 226.86 261.23 178.07 292.55 409.16 392.83 352.09 395.91 209.28 457.83 325.57 109.81 162.64 172.51 168.28 219.03 110.12 30 ER10a ExonRegion 0 137.81 217.67 186.51 198.10 219.54 250.56 168.48 173.92 135.03 268.14 416.94 489.97 371.89 452.34 316.02 447.74 384.84 119.77 172.17 141.41 125.88 179.26 147.51 31 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 1.48 0.00 0.00 0.00 4.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 E10a_E12a KnownJunction 0 127.87 260.22 191.18 210.40 231.66 300.22 203.15 163.02 110.13 278.26 449.38 493.96 359.07 425.75 327.71 375.37 425.06 130.37 172.71 164.08 164.51 150.45 99.53 33 E10a_E13a NovelJunction 0 6.59 5.33 9.17 6.93 13.75 17.66 7.73 14.75 18.03 11.20 7.79 25.21 6.82 6.65 18.42 3.33 16.55 7.71 8.09 5.37 12.05 2.63 3.93 34 E11_Aa NovelBoundary 0 16.74 8.09 7.13 18.75 11.71 25.21 10.38 19.63 14.09 1.10 0.00 15.91 5.68 9.42 4.45 7.52 4.21 16.58 0.00 23.20 0.00 5.20 4.35 35 ER11a ExonRegion 0 0.14 0.00 0.06 0.18 0.00 1.56 0.04 0.00 0.51 0.48 0.00 0.14 0.00 4.30 1.89 2.67 2.81 0.00 2.71 3.62 1.87 0.07 2.55 36 E11_Da NovelBoundary 0 3.33 2.89 36.34 24.31 24.11 0.00 4.46 10.35 6.48 23.37 2.63 0.00 20.45 2.88 4.45 7.35 4.21 23.59 3.95 23.65 4.88 5.51 3.41 37 ER12a ExonRegion 0 162.38 236.74 178.81 149.35 257.49 284.15 183.09 137.05 129.28 274.92 447.32 478.09 242.97 405.10 300.53 358.79 367.49 136.87 123.41 152.00 191.19 165.61 132.58 38 E12a_E13a KnownJunction 0 174.18 218.58 174.27 138.18 295.84 295.68 200.98 131.44 147.16 230.74 431.32 462.90 229.04 472.48 327.22 366.31 354.56 113.00 204.62 147.78 182.61 194.54 108.75 39 ER13a ExonRegion 0 128.46 176.34 170.70 158.95 219.16 237.20 167.83 137.67 141.61 233.05 368.84 448.05 259.39 415.77 349.70 367.60 341.84 124.84 174.39 138.11 227.62 155.60 131.78 40 E13_Da NovelBoundary 0 21.86 43.61 59.34 52.04 44.82 29.59 36.92 55.00 73.29 62.13 43.70 81.78 27.76 42.32 54.89 56.14 29.83 55.09 51.11 44.68 47.45 30.31 37.13 41 E13a_E14a KnownJunction 0 74.09 126.29 99.43 93.99 137.44 191.20 90.00 100.55 68.84 186.61 280.33 353.22 204.86 337.99 346.75 319.15 313.88 89.71 83.30 85.90 161.92 84.87 79.22 42 E13a_E15a NovelJunction 0 8.96 9.01 36.01 10.35 3.40 2.61 0.00 8.58 9.26 5.69 16.95 6.30 0.00 14.07 4.45 8.37 12.81 21.39 3.58 9.20 6.12 3.12 3.24 43 I13 Intron 0 55.18 88.13 36.74 69.65 64.08 70.06 50.26 49.10 41.53 51.09 28.97 33.99 37.83 37.01 41.84 51.58 31.19 27.63 40.48 46.79 15.44 34.29 27.75 44 I13_AR1 ActiveIntronRegion 0 27.61 51.44 28.87 35.33 35.97 53.65 35.07 28.51 44.38 40.54 21.40 22.55 22.03 38.75 42.78 84.60 39.15 49.42 51.63 47.09 20.91 32.12 32.51 45 I13_SR1 SilentIntronRegion 0 60.13 91.77 40.55 75.73 66.73 72.63 51.52 54.99 40.56 56.46 30.53 34.60 40.07 35.68 42.15 43.70 28.90 22.65 39.15 43.07 14.24 36.52 30.20 46 I13_AR2 ActiveIntronRegion 0 71.28 120.21 33.24 89.98 89.16 81.66 64.70 53.53 42.37 45.52 32.97 46.00 49.22 40.33 40.38 41.34 30.47 19.99 32.73 60.47 13.46 29.57 13.96 47 E14_Aa NovelBoundary 1 103.50 161.35 83.62 166.98 96.26 112.09 100.56 109.87 73.90 81.20 47.75 79.68 78.73 33.14 68.98 47.08 58.53 30.92 49.32 90.19 20.39 53.09 38.58 48 ER14a ExonRegion 0 152.63 156.46 108.41 124.57 223.96 266.24 136.48 129.94 86.92 204.55 381.31 372.82 232.98 461.37 388.30 392.32 332.40 99.36 161.46 114.81 176.77 137.46 97.13 49 E14_Da NovelBoundary 1 101.94 66.76 50.97 163.28 119.61 109.88 65.27 91.72 64.44 85.23 37.17 87.93 40.91 27.96 34.49 46.48 29.36 48.33 39.44 90.06 31.69 20.94 22.11 50 E14a_E15a KnownJunction 0 213.74 153.20 100.06 112.51 238.29 297.39 135.18 125.56 74.83 198.83 387.78 278.04 253.72 490.85 448.48 392.38 492.19 84.48 173.18 97.92 176.87 156.08 140.00 51 I14 Intron 0 93.22 79.60 61.75 87.52 79.18 82.77 56.51 57.25 54.97 73.19 41.91 48.93 35.86 46.72 43.08 93.62 41.41 74.90 50.82 59.19 48.98 34.09 40.85 52 I14_AR1 ActiveIntronRegion 0 93.70 80.01 62.09 87.99 79.60 83.22 56.82 57.55 55.26 73.58 42.13 49.18 36.06 46.96 43.30 94.10 41.63 75.29 51.09 59.49 49.23 34.28 41.07 53 E15_Aa NovelBoundary 0 120.24 99.19 79.33 148.37 82.34 77.11 82.72 86.26 52.02 75.51 43.48 38.11 39.77 56.33 60.33 51.52 35.90 38.22 33.60 44.04 62.83 37.41 32.78 54 ER15a ExonRegion 0 247.99 148.74 139.25 158.86 214.61 262.33 145.45 136.46 102.69 223.44 448.21 302.84 212.55 441.11 398.40 394.30 394.33 127.76 142.36 91.79 206.39 173.17 140.54 55 E15_Da NovelBoundary 0 14.00 38.28 44.59 36.96 31.66 28.62 37.76 31.05 29.98 44.86 9.16 23.56 13.64 56.68 28.93 39.05 39.74 19.90 18.82 23.27 23.54 15.98 34.66 56 E15a_E16a KnownJunction 0 274.49 141.49 198.81 189.95 260.44 288.58 143.04 135.34 102.23 198.89 381.78 344.36 253.72 390.08 471.35 394.94 290.42 100.23 115.30 88.21 233.27 118.06 112.42 57 I15 Intron 0 21.00 30.74 22.92 20.82 26.73 26.15 26.55 25.05 26.26 27.52 18.67 22.84 14.96 20.50 18.64 34.77 21.25 14.44 19.89 26.01 10.43 16.16 15.63 58 I15_SR1 SilentIntronRegion 0 21.06 30.82 22.98 20.87 26.80 26.22 26.62 25.12 26.32 27.59 18.72 22.89 15.00 20.55 18.69 34.86 21.30 14.48 19.94 26.08 10.45 16.20 15.67 59 E16_Aa NovelBoundary 0 113.35 95.51 59.28 42.15 50.68 35.89 34.45 67.48 50.55 42.90 22.22 17.86 11.53 29.08 67.00 77.24 56.19 62.10 26.07 53.24 31.94 24.92 19.21 60 ER16a ExonRegion 0 301.63 255.04 209.60 178.80 232.66 290.63 171.48 149.04 111.83 227.56 319.22 312.11 204.51 382.49 390.25 345.61 328.62 107.80 119.47 100.01 218.29 138.09 94.12 61 E16_Da NovelBoundary 0 33.64 56.90 30.87 27.97 131.41 139.98 101.44 41.94 59.06 58.26 24.59 24.91 13.15 29.55 47.84 34.35 32.07 32.62 34.82 52.73 17.30 28.17 12.98 62 E16a_E17c KnownJunction 0 299.61 297.58 282.96 195.21 289.47 362.23 200.23 168.36 93.78 227.55 319.61 312.10 169.31 491.67 467.89 355.29 229.36 124.90 127.44 95.17 144.56 113.10 113.11 63 I16 Intron 0 53.66 62.32 33.01 43.88 48.96 37.87 31.72 38.43 40.31 41.95 20.17 23.24 22.24 22.20 26.75 25.55 17.46 21.95 19.19 25.02 12.79 22.51 18.56 64 I16_AR1 ActiveIntronRegion 0 44.77 50.00 31.36 43.33 54.19 42.78 31.59 35.85 46.93 51.91 16.05 26.44 17.46 19.99 24.08 25.80 17.91 18.94 25.35 20.40 9.15 24.50 20.18 65 I16_SR1 SilentIntronRegion 0 60.03 71.07 34.30 44.46 45.59 34.67 31.95 40.37 35.94 35.29 23.08 21.16 25.64 23.82 28.69 25.51 17.24 24.13 15.06 28.32 15.35 21.25 17.52 66 E17_Aa NovelBoundary 1 113.87 106.30 125.31 99.75 66.64 79.78 64.88 99.81 72.45 63.13 14.74 71.87 34.09 23.25 49.32 18.97 7.11 25.78 21.46 60.02 33.55 38.21 34.57 67 ER17a ExonRegion 1 128.02 108.44 57.45 48.09 74.28 46.44 37.36 42.96 38.91 49.04 13.09 24.08 26.80 22.09 36.09 40.82 7.39 19.45 19.60 23.24 11.84 24.51 25.37 68 E17_Ab KnownBoundary 1 292.05 205.62 111.65 70.22 198.81 57.13 128.47 99.32 67.82 64.84 13.90 12.30 41.72 21.84 50.44 71.69 7.85 29.10 20.42 34.52 10.69 58.60 25.87 69 ER17b ExonRegion 1 219.42 164.90 67.84 54.84 148.40 70.59 93.90 72.69 60.63 59.74 25.62 39.73 45.77 26.77 49.77 42.59 18.97 27.86 19.08 36.64 13.17 34.32 23.53 70 E17_Ac KnownBoundary 0 154.10 168.72 59.87 31.03 176.66 58.89 35.20 75.74 51.65 46.42 14.06 44.56 31.65 19.13 49.32 40.42 7.48 25.54 24.94 34.07 11.24 29.27 12.46 71 ER17c ExonRegion 0 443.23 366.91 282.37 214.59 322.76 364.15 203.69 226.60 155.21 289.38 364.83 235.09 191.12 402.56 426.48 337.93 329.02 127.77 115.71 129.95 201.12 131.52 133.69 72 E17a_E18a KnownJunction 0 421.48 402.43 286.65 228.18 452.04 395.06 251.77 235.77 175.87 306.28 354.77 301.60 183.43 465.01 602.02 473.04 397.85 157.40 180.52 118.31 237.10 198.83 177.13 73 ER18a ExonRegion 0 346.78 271.30 341.90 281.21 365.17 341.59 195.73 264.28 172.35 311.67 368.83 248.20 245.16 449.95 502.05 465.03 305.00 168.35 198.97 124.68 174.13 203.31 153.56 74 E18_Da KnownBoundary 0 6.52 2.76 14.90 14.02 15.20 10.33 1.72 14.87 4.37 1.10 0.00 0.00 13.47 0.00 5.81 7.60 0.00 4.73 0.00 11.51 0.00 0.00 4.35 75 E18a_E19a KnownJunction 0 513.28 349.28 494.72 352.14 392.78 423.96 267.27 306.78 191.09 421.28 419.21 369.57 345.43 565.55 653.56 518.33 402.34 164.28 299.59 138.06 172.67 311.37 169.62 76 ER18b ExonRegion 1 29.24 38.11 7.89 6.25 24.29 31.75 35.88 5.84 5.45 2.34 18.80 25.58 33.29 16.32 37.63 46.36 39.92 10.51 44.25 38.20 18.53 11.50 40.45 77 E18_Db NovelBoundary 0 72.01 32.76 80.28 101.89 81.49 18.85 69.38 62.80 80.99 50.26 14.37 14.10 0.00 5.18 18.91 50.59 35.81 78.84 46.02 43.40 26.38 36.31 62.66 78 ER19a ExonRegion 0 477.04 309.50 403.51 293.55 428.76 307.80 233.75 280.96 165.32 335.22 450.05 246.00 299.60 447.63 557.82 347.30 348.07 134.53 191.22 123.75 180.64 204.40 153.10 79 E19a_E20a KnownJunction 0 464.53 315.47 352.38 288.37 389.05 329.53 200.90 282.92 148.87 295.37 356.62 246.23 209.73 413.39 682.12 308.47 264.89 120.59 163.39 114.92 146.35 182.17 164.32 80 E19a_E21a NovelJunction 0 26.38 27.63 15.85 21.18 27.67 17.32 6.14 2.55 4.86 22.86 14.48 6.15 12.99 9.65 8.78 3.25 7.85 2.57 28.33 5.69 0.00 14.02 0.00 81 ER20a ExonRegion 0 427.57 354.51 371.86 302.82 399.38 285.47 189.38 285.34 162.26 346.08 406.49 224.90 180.73 399.78 532.24 391.14 272.03 128.94 202.60 123.20 159.81 253.68 123.58 82 E20a_E21a KnownJunction 0 929.42 557.33 494.10 418.66 711.97 545.20 270.01 352.00 196.84 441.50 493.23 247.13 205.83 372.65 615.49 622.83 332.02 175.02 356.15 96.26 186.38 387.12 156.56 83 ER21a ExonRegion 0 359.49 255.73 322.39 271.12 352.66 240.63 155.72 260.63 143.91 312.25 344.23 276.26 198.60 334.09 484.75 316.02 263.62 110.08 172.39 107.94 161.51 210.32 110.21 84 E21_Da KnownBoundary 0 335.39 245.75 262.82 198.38 259.34 133.22 136.86 237.41 116.03 277.51 264.75 120.94 119.64 264.05 410.78 264.20 195.89 81.12 124.24 86.61 144.00 270.04 67.18 85 ER21b ExonRegion 0 186.25 155.17 144.58 120.71 183.86 105.12 87.43 123.64 68.86 146.74 141.27 158.83 83.96 129.56 194.47 137.75 116.91 45.49 73.70 47.78 73.63 115.21 39.72 86 E21_Db KnownBoundary 0 26.30 35.13 29.30 19.34 104.84 104.54 54.28 27.03 18.03 35.62 16.06 18.31 13.64 37.61 10.75 60.75 20.94 7.17 7.72 9.52 29.65 50.09 12.80 87 ER21c ExonRegion 0 27.61 30.38 26.56 23.27 39.34 24.32 29.53 28.32 22.50 29.23 11.96 22.56 17.32 19.00 29.20 28.42 21.68 16.61 21.80 20.53 15.25 19.54 22.58