Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FBXL20 Gene 0 64.44 93.34 89.47 111.50 89.92 117.85 88.15 73.75 109.39 86.27 44.09 27.99 38.83 28.82 27.89 45.24 44.89 109.70 67.56 106.85 67.20 68.22 81.42 2 394294 Transcript 0 0.00 0.00 13.45 4.13 4.33 7.44 0.00 2.55 4.34 1.53 4.79 0.00 0.00 0.00 0.00 0.00 0.00 5.72 0.00 3.00 0.00 11.45 3.76 3 264658 Transcript 0 35.40 73.60 58.01 73.18 97.28 111.44 85.84 61.14 102.75 66.09 37.84 34.14 11.62 32.34 17.21 45.10 48.67 84.27 20.21 83.05 69.05 61.05 68.54 4 ER1a ExonRegion 0 10.07 10.51 6.49 7.80 5.29 18.01 12.32 2.81 8.35 7.91 5.88 3.43 3.03 4.46 5.07 14.80 8.57 14.14 15.70 23.44 30.62 14.58 24.38 5 E1a_E2a KnownJunction 0 3.26 39.40 10.56 25.97 27.08 47.13 3.97 15.53 22.77 17.94 0.00 12.60 6.82 9.18 0.00 23.41 8.23 60.85 27.11 28.00 42.69 58.66 47.04 6 I1 Intron 0 10.95 12.27 14.28 22.69 18.49 5.81 21.29 11.17 10.21 6.60 0.66 3.44 4.58 0.48 2.68 3.86 2.45 5.08 4.64 20.34 1.38 1.10 5.80 7 I1_SR1 SilentIntronRegion 0 7.03 10.72 14.00 20.51 13.59 5.91 19.99 8.32 11.37 5.63 1.02 3.71 3.82 0.68 2.53 3.14 3.27 5.41 4.95 21.25 2.14 1.07 6.94 8 I1_AR1 ActiveIntronRegion 0 15.02 19.16 25.72 32.43 18.33 7.24 22.71 17.02 17.03 8.19 0.59 2.16 5.54 0.14 2.88 7.50 3.36 10.91 4.19 23.88 2.50 0.84 7.50 9 I1_SR2 SilentIntronRegion 0 15.89 18.44 22.99 37.40 26.23 8.33 28.42 17.28 14.70 11.32 0.79 3.82 4.30 0.56 3.92 6.05 2.14 5.43 7.03 28.22 1.81 1.53 8.64 10 I1_AR3 ActiveIntronRegion 0 41.68 22.20 36.37 45.95 72.76 17.96 62.94 30.08 26.52 12.68 2.46 3.03 6.33 0.92 5.08 10.11 10.48 21.76 22.16 29.75 0.94 5.52 24.18 11 I1_AR4 ActiveIntronRegion 0 5.40 3.51 10.31 15.31 7.23 3.61 22.52 8.36 6.92 2.29 1.02 2.00 8.09 0.27 1.50 1.50 2.10 3.25 2.00 10.12 1.24 0.85 5.13 12 I1_SR3 SilentIntronRegion 0 10.65 10.92 11.38 19.09 17.80 4.89 19.27 10.21 8.21 5.69 0.45 3.35 4.83 0.40 2.43 3.35 2.09 4.40 3.78 17.97 0.95 0.97 4.38 13 I1_AR5 ActiveIntronRegion 0 4.70 6.76 6.37 12.63 14.00 6.46 22.37 4.53 0.73 1.74 1.57 2.38 3.83 0.40 0.00 0.73 1.19 0.88 1.14 6.29 0.00 0.76 1.65 14 ER2a ExonRegion 0 10.24 56.12 26.23 25.98 71.21 117.27 55.05 26.12 46.93 40.40 23.94 20.74 4.01 12.44 12.54 16.92 30.93 52.01 29.80 53.81 48.48 48.39 28.61 15 E2a_E3a KnownJunction 1 18.00 42.03 38.82 39.66 143.80 215.73 126.61 44.32 56.74 62.96 45.64 18.01 13.64 12.42 4.45 10.94 53.02 54.35 22.78 68.46 53.00 45.44 15.88 16 I2 Intron 0 13.90 12.22 9.34 19.13 19.35 7.07 18.08 11.26 9.42 6.53 1.00 2.33 5.83 0.70 2.53 3.61 2.89 6.37 5.90 12.44 1.61 3.64 6.31 17 I2_AR1 ActiveIntronRegion 0 7.03 19.30 3.03 12.53 3.81 3.91 6.91 7.33 5.68 4.05 0.00 0.00 5.50 0.63 1.94 0.00 0.78 2.41 5.29 5.55 0.52 2.47 4.88 18 I2_SR1 SilentIntronRegion 0 15.09 13.64 9.72 25.24 18.44 3.92 21.95 10.93 9.52 7.66 0.93 1.83 5.98 0.66 3.61 4.11 4.07 7.94 6.80 18.05 1.86 3.07 7.51 19 I2_AR2 ActiveIntronRegion 0 19.13 13.61 4.29 11.75 12.09 7.94 19.62 13.04 5.99 3.08 0.35 1.93 2.94 0.24 3.55 6.44 2.39 7.48 3.46 7.31 0.00 1.50 2.66 20 I2_AR4 ActiveIntronRegion 1 13.46 6.74 6.25 14.51 22.80 12.23 15.80 7.63 7.94 4.51 0.60 3.69 18.89 0.19 5.54 4.51 2.44 2.58 2.78 13.89 0.92 3.81 4.02 21 I2_AR6 ActiveIntronRegion 0 9.62 7.39 13.46 20.10 31.62 8.15 24.74 13.53 11.90 5.52 1.17 3.32 5.02 1.14 3.03 6.60 3.00 10.31 10.29 15.90 0.45 2.74 8.31 22 I2_SR4 SilentIntronRegion 0 14.39 13.85 8.08 20.09 20.38 6.33 18.52 12.47 10.35 5.33 0.44 2.57 5.32 0.58 1.31 2.14 1.43 4.84 5.10 11.75 0.78 4.09 4.57 23 I2_AR7 ActiveIntronRegion 0 6.35 20.40 3.96 9.78 20.86 5.66 5.96 2.95 2.65 1.69 3.52 0.00 12.83 0.00 0.00 3.06 0.00 4.29 10.77 11.20 0.00 0.00 10.45 24 I2_AR8 ActiveIntronRegion 0 1.01 11.62 4.26 8.44 0.25 0.00 6.49 2.88 1.47 2.79 0.00 2.89 16.08 0.00 3.87 0.00 0.00 1.41 0.00 4.56 0.00 0.00 2.52 25 I2_SR5 SilentIntronRegion 0 2.12 20.34 7.35 15.67 4.46 0.00 15.23 6.91 2.47 6.50 0.00 8.66 18.76 0.00 5.80 0.00 0.00 3.70 0.00 8.51 0.00 0.00 2.94 26 I2_AR9 ActiveIntronRegion 0 28.81 40.88 10.13 30.02 38.08 6.68 29.07 21.60 14.96 10.86 1.47 6.08 12.98 0.58 5.02 1.35 3.01 5.85 1.45 16.36 0.33 4.74 8.71 27 I2_SR7 SilentIntronRegion 0 15.79 9.91 10.98 19.13 21.43 10.14 15.32 12.79 10.20 8.97 1.38 1.44 3.90 0.98 2.93 4.87 3.30 9.38 8.32 12.31 2.69 4.42 8.16 28 I2_AR11 ActiveIntronRegion 0 28.42 18.40 21.93 40.31 28.96 12.05 29.69 23.53 17.46 11.81 1.55 2.79 15.11 0.90 2.12 2.93 5.43 4.93 4.89 14.85 1.21 4.48 5.13 29 ER3a ExonRegion 1 16.16 46.77 45.38 55.04 80.13 165.68 104.76 42.05 66.85 64.73 40.94 15.66 8.87 19.49 12.61 13.67 44.89 67.96 25.02 80.54 59.38 40.76 42.02 30 E3a_E4a KnownJunction 0 10.30 73.41 61.71 71.99 30.48 107.15 85.98 44.69 78.33 61.14 38.43 12.60 26.62 19.90 9.64 31.27 31.14 85.60 16.19 66.60 91.06 30.25 41.23 31 E4_Aa NovelBoundary 0 36.97 5.92 12.03 20.28 10.95 7.50 29.32 0.00 1.39 1.02 2.32 0.00 0.00 0.00 0.00 0.00 8.32 1.87 3.67 5.37 0.00 0.00 0.00 32 ER4a ExonRegion 0 50.88 65.32 63.44 80.88 59.79 69.42 60.71 60.82 82.93 76.93 44.84 22.11 26.51 27.18 16.48 43.83 54.66 105.86 35.12 87.83 58.79 60.56 66.37 33 E4a_E5a KnownJunction 0 32.30 43.94 70.99 64.19 77.59 81.71 62.36 71.55 87.01 76.83 47.85 37.96 13.64 16.78 15.33 34.52 69.10 103.01 54.97 124.13 63.32 101.22 63.25 34 ER5a ExonRegion 0 27.31 42.62 72.31 89.15 72.72 76.02 70.70 54.31 111.81 69.36 56.58 27.44 11.60 31.25 23.55 34.70 69.70 84.04 50.63 118.12 60.96 73.36 61.36 35 E5_Da NovelBoundary 0 16.67 6.12 12.27 58.03 25.21 4.88 27.16 10.10 8.25 8.81 0.00 5.55 13.64 0.00 0.00 4.36 0.00 9.41 9.32 14.19 2.90 5.08 7.17 36 E5a_E6a KnownJunction 0 35.19 56.63 65.11 70.79 84.64 101.99 64.83 46.70 103.79 58.75 52.01 12.45 20.45 45.32 10.75 52.55 54.79 95.01 30.78 103.93 42.56 49.54 68.03 37 E6_Aa NovelBoundary 0 7.11 23.48 12.12 28.63 66.55 24.36 21.68 5.91 9.72 8.73 0.00 0.00 7.14 0.00 0.00 0.00 0.00 1.82 14.40 14.64 0.00 5.45 0.00 38 ER6a ExonRegion 1 38.16 80.78 69.88 77.35 86.67 119.89 91.91 66.81 98.20 60.17 49.11 28.49 24.20 42.51 14.38 45.74 35.50 104.57 27.79 118.41 54.23 63.08 56.39 39 E6_Da NovelBoundary 0 19.11 32.49 10.73 50.71 29.29 16.24 31.53 9.65 23.41 7.33 0.00 5.70 13.64 0.00 0.00 15.64 8.60 8.87 13.46 17.07 0.00 15.74 6.32 40 E6a_E7a KnownJunction 0 27.41 53.28 53.31 74.35 101.27 82.40 73.88 61.04 98.47 63.47 34.11 25.36 5.68 21.96 16.56 8.46 24.78 58.24 3.58 99.26 60.79 55.23 51.22 41 E6a_E8a KnownJunction 0 0.00 0.00 13.45 4.13 4.33 7.44 0.00 2.55 4.34 1.53 4.79 0.00 0.00 0.00 0.00 0.00 0.00 5.72 0.00 3.00 0.00 11.45 3.76 42 I6 Intron 0 14.66 17.59 12.49 36.54 23.96 9.53 22.75 10.60 12.28 7.79 2.90 6.08 9.10 0.94 3.22 4.55 2.85 5.47 6.29 14.44 3.00 8.69 9.72 43 I6_SR1 SilentIntronRegion 0 12.87 20.11 13.13 29.40 22.72 9.64 22.87 9.45 11.72 7.42 1.03 7.06 7.02 1.08 3.29 4.73 3.19 4.44 6.15 12.42 2.55 7.64 8.93 44 I6_SR2 SilentIntronRegion 0 17.13 14.19 11.65 46.37 25.71 9.41 22.65 12.20 13.08 8.32 5.47 4.74 11.97 0.74 3.13 4.30 2.39 6.90 6.49 17.22 3.62 10.15 10.82 45 E7_Aa NovelBoundary 0 2.74 31.18 9.79 38.49 42.28 15.67 56.57 0.00 25.95 8.33 0.00 0.00 0.00 7.42 0.00 0.00 11.69 0.00 0.00 19.18 2.47 4.71 11.35 46 ER7a ExonRegion 0 33.16 77.02 60.12 72.30 84.62 114.04 83.26 62.75 104.19 64.43 39.93 46.90 23.50 32.28 14.66 48.05 54.95 93.68 35.50 87.90 71.23 59.10 68.00 47 E7_Da NovelBoundary 0 3.78 11.71 8.07 29.80 7.98 7.78 42.62 3.98 11.52 7.41 2.58 6.15 22.56 4.41 4.45 7.78 4.77 11.03 8.66 6.52 3.15 14.08 4.35 48 E7a_E8a KnownJunction 0 45.64 90.51 60.61 72.88 105.94 137.88 100.38 59.64 105.61 70.38 39.48 30.16 5.68 42.79 20.40 78.78 66.29 100.90 21.55 62.00 75.12 68.83 86.39 49 I7 Intron 0 9.66 19.14 11.23 28.58 16.96 9.94 21.19 8.08 11.61 6.99 1.23 4.82 5.94 1.65 3.37 5.56 3.77 7.11 8.18 18.68 4.40 6.54 8.38 50 I7_SR1 SilentIntronRegion 0 9.69 19.19 11.26 28.65 17.00 9.96 21.25 8.10 11.64 7.01 1.23 4.83 5.95 1.66 3.38 5.57 3.78 7.13 8.20 18.73 4.42 6.55 8.40 51 E8_Aa NovelBoundary 0 10.37 14.21 6.06 38.66 11.80 9.99 42.40 13.10 12.18 16.39 2.68 6.30 0.00 0.00 0.00 3.85 0.00 8.33 4.05 14.76 12.60 5.45 7.34 52 ER8a ExonRegion 0 34.76 78.80 72.59 89.71 91.40 146.62 93.25 68.76 94.38 79.17 41.81 43.74 37.74 52.47 26.07 65.48 57.70 138.16 71.51 107.99 85.86 72.12 74.71 53 E8_Da NovelBoundary 0 30.52 2.76 12.03 24.41 14.52 13.12 2.16 5.18 4.46 5.86 2.68 6.00 13.64 2.12 4.45 0.00 0.00 8.33 13.18 17.39 16.80 0.00 15.79 54 E8a_E9a KnownJunction 0 48.82 75.12 59.99 84.97 176.57 203.24 103.47 72.74 125.69 64.95 35.64 25.51 15.10 41.38 31.77 65.11 68.16 136.55 130.92 124.77 78.46 92.16 93.30 55 I8 Intron 0 10.75 17.95 9.57 40.37 20.82 6.43 25.51 9.76 12.69 5.37 1.64 6.04 6.27 1.29 2.41 5.63 2.79 7.12 8.09 27.45 2.13 8.40 6.63 56 I8_SR1 SilentIntronRegion 0 10.59 18.31 9.82 41.55 20.84 5.44 25.72 10.07 13.75 5.44 1.60 5.67 5.76 1.46 2.59 6.22 2.75 7.56 8.03 29.56 2.59 8.69 6.09 57 I8_AR1 ActiveIntronRegion 0 11.31 16.97 8.85 36.95 20.91 9.56 25.04 8.87 9.48 5.22 1.76 7.21 7.90 0.80 1.84 3.83 2.95 5.80 8.32 21.07 0.73 7.55 8.37 58 E9_Aa NovelBoundary 0 9.26 8.75 12.12 61.06 41.34 8.69 22.74 14.21 16.35 6.82 2.00 0.00 12.66 2.41 0.00 6.84 0.00 15.71 8.85 20.13 9.02 8.70 4.01 59 ER9a ExonRegion 0 44.14 72.75 87.77 82.03 125.37 147.14 90.31 71.35 110.93 92.93 53.99 29.32 31.02 36.62 33.69 60.12 59.77 151.54 86.81 126.61 91.56 74.84 102.78 60 E9a_E10a KnownJunction 0 67.20 90.31 121.28 112.71 111.55 119.76 83.29 68.92 102.02 97.46 29.06 38.26 32.95 31.90 31.03 66.31 49.37 153.67 57.79 137.36 92.30 81.44 109.69 61 ER10a ExonRegion 0 74.69 102.87 88.44 110.41 83.95 127.99 85.30 75.80 126.16 98.21 48.81 34.44 44.97 41.67 31.05 65.82 62.11 167.79 97.94 131.72 85.74 71.36 88.12 62 E10_Da NovelBoundary 0 10.67 50.58 33.50 68.92 12.99 18.51 29.15 29.45 27.63 10.15 0.00 7.35 0.00 2.30 0.00 8.72 4.77 27.57 12.42 27.04 11.61 5.33 3.76 63 E10a_E11a KnownJunction 0 49.05 78.47 67.59 71.65 83.62 175.24 95.66 56.85 122.02 80.53 41.38 24.46 73.05 28.72 29.30 37.77 45.07 142.19 83.96 138.25 67.21 44.21 89.63 64 I10 Intron 0 18.42 28.11 12.88 40.90 25.04 12.04 29.45 18.76 17.85 11.13 1.70 3.99 5.45 1.13 3.07 6.26 2.82 10.46 10.69 19.85 5.08 5.93 9.86 65 I10_AR1 ActiveIntronRegion 0 6.77 22.34 16.48 45.34 23.01 11.53 30.99 16.80 17.97 11.14 2.18 4.49 7.63 1.70 4.80 5.66 3.54 10.31 11.62 25.99 3.31 6.83 6.12 66 I10_SR1 SilentIntronRegion 0 20.23 29.03 12.34 40.27 25.38 12.14 29.25 19.08 17.86 11.14 1.63 3.92 5.13 1.04 2.81 6.36 2.71 10.49 10.56 18.93 5.36 5.79 10.44 67 E11_Aa NovelBoundary 0 25.63 24.54 17.06 37.56 18.08 27.88 17.44 23.04 12.67 7.68 2.32 0.00 0.00 0.00 4.45 0.00 0.00 0.00 3.86 14.13 3.03 5.27 3.84 68 ER11a ExonRegion 0 52.53 96.51 91.64 103.20 97.20 167.57 111.39 72.11 116.40 94.05 58.49 45.28 44.82 25.43 23.02 57.79 52.92 149.64 74.52 125.60 64.96 81.22 118.77 69 E11a_E12a KnownJunction 0 67.12 109.19 123.38 136.68 154.75 226.46 98.26 88.31 112.59 109.95 30.11 27.46 19.97 12.30 41.66 48.19 89.67 138.54 56.57 122.72 69.19 88.30 115.07 70 ER12a ExonRegion 0 65.56 104.80 115.68 134.20 153.71 252.45 108.36 87.88 129.33 124.04 63.01 27.23 35.96 44.03 44.03 45.84 77.46 178.21 82.18 128.56 71.06 83.11 108.33 71 E12_Da NovelBoundary 0 21.04 34.34 14.93 35.26 85.23 61.95 98.57 13.51 8.25 4.73 0.00 0.00 13.64 0.00 4.45 3.50 16.64 7.88 0.00 23.78 2.78 9.31 3.59 72 E12a_E13a KnownJunction 0 79.79 110.84 92.28 118.23 161.63 236.28 121.89 71.39 119.82 103.77 78.81 44.71 63.31 41.44 63.66 52.38 47.97 177.05 124.62 130.71 56.84 72.56 111.74 73 I12 Intron 0 14.02 8.76 9.67 21.97 20.48 10.26 15.35 10.99 9.48 6.98 0.64 2.00 4.73 0.34 1.97 3.50 2.43 9.78 9.61 12.53 4.46 2.61 6.16 74 I12_SR1 SilentIntronRegion 0 14.04 8.77 9.69 22.00 20.51 10.27 15.37 11.01 9.50 6.99 0.64 2.00 4.74 0.34 1.97 3.50 2.43 9.79 9.63 12.54 4.46 2.61 6.17 75 E13_Aa NovelBoundary 0 12.82 14.80 15.94 39.86 28.10 4.77 23.05 16.88 20.95 10.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.84 12.89 24.03 3.15 9.00 7.26 76 ER13a ExonRegion 0 60.04 90.26 96.18 126.53 98.25 138.08 97.02 84.06 125.22 110.30 62.94 35.62 53.07 33.14 31.35 54.85 52.70 190.84 97.68 146.32 62.67 75.74 118.19 77 E13a_E14a KnownJunction 0 90.24 91.76 133.50 143.60 111.63 174.10 97.29 90.08 128.09 114.67 63.65 32.11 72.40 36.67 42.03 65.71 39.46 172.28 104.29 143.30 65.42 86.46 122.75 78 I13_AR1 ActiveIntronRegion 0 13.56 11.59 10.28 18.77 10.18 6.22 13.70 10.63 4.10 4.78 0.60 1.37 3.95 0.63 1.18 3.43 6.35 2.59 6.74 6.86 0.64 2.00 3.50 79 ER14a ExonRegion 0 70.71 118.05 119.72 111.57 90.07 138.70 91.04 86.83 120.86 101.98 50.62 21.28 36.16 34.32 35.69 51.56 46.96 160.68 77.29 115.58 84.98 75.26 113.88 80 E14_Da NovelBoundary 0 22.00 38.61 13.69 12.55 24.53 4.77 18.72 11.62 7.09 9.83 0.00 6.30 0.00 0.00 11.50 8.03 0.00 2.03 23.06 26.59 3.09 9.06 0.00 81 E14a_E15a KnownJunction 0 157.95 114.58 130.84 149.43 124.87 267.52 133.99 107.04 140.57 115.99 53.43 18.91 33.11 60.98 24.60 63.57 37.96 227.54 137.23 106.29 136.84 108.38 144.01 82 I14_AR1 ActiveIntronRegion 0 15.48 13.35 10.90 12.90 5.66 3.94 11.22 7.93 8.16 3.29 1.49 4.17 4.81 0.96 2.50 0.57 1.25 3.36 2.45 12.28 0.42 2.81 3.39 83 E15_Aa NovelBoundary 0 21.93 16.58 18.92 28.77 38.03 34.87 50.12 13.10 27.20 10.80 2.47 0.00 0.00 0.00 0.00 0.00 8.13 31.92 13.46 40.33 5.87 5.27 15.62 84 ER15a ExonRegion 0 99.80 128.45 122.38 165.19 115.17 130.00 111.58 100.37 143.27 111.45 50.12 31.89 58.82 28.74 36.99 49.26 44.85 112.12 86.60 126.14 70.86 83.17 95.41 85 IG48 Intergenic 0 37.92 59.46 46.17 80.58 86.72 66.22 87.23 59.99 83.45 42.31 12.05 25.07 36.52 12.25 12.87 20.11 16.46 27.25 38.34 53.50 16.48 59.51 42.88 86 IG48_AR3 ActiveIntergenicRegion 0 47.06 36.58 31.86 62.06 57.18 29.24 58.15 50.31 71.32 31.77 14.70 9.19 62.32 12.39 2.23 13.11 8.77 21.11 39.05 52.32 13.22 40.01 30.45 87 IG48_SR2 SilentIntergenicRegion 0 82.56 75.66 91.31 141.97 134.81 99.43 151.03 118.52 175.72 85.95 25.77 37.72 79.37 20.51 15.93 24.86 33.51 27.72 68.65 93.83 19.70 126.69 63.93 88 IG48_AR2 ActiveIntergenicRegion 0 33.73 59.48 63.91 125.74 108.23 76.44 120.36 82.49 107.12 49.74 13.49 41.82 42.97 12.73 15.92 30.30 21.67 46.96 51.88 47.83 19.67 84.70 56.40 89 IG48_SR1 SilentIntergenicRegion 0 58.09 86.27 36.05 63.39 147.88 114.63 119.19 37.53 60.03 29.23 11.12 11.55 19.18 23.17 7.16 27.74 9.32 55.51 58.54 41.75 31.44 36.07 53.64 90 IG48_AR1 ActiveIntergenicRegion 0 31.33 57.39 34.58 56.60 70.07 57.69 65.53 45.07 63.54 34.93 9.38 18.68 26.82 10.23 12.43 15.50 13.06 18.07 27.29 50.87 14.13 43.21 34.85