Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TADA2L Gene 0 46.09 58.32 62.39 82.39 90.28 91.54 107.45 51.87 42.93 58.27 85.81 72.31 101.79 115.64 95.70 73.82 86.73 60.71 45.41 89.81 35.76 28.15 32.66 2 394395 Transcript 1 85.06 113.33 17.41 25.42 121.51 199.46 233.97 19.04 23.06 33.23 105.90 2.85 13.06 105.56 98.13 119.59 100.66 64.92 84.06 92.90 47.05 27.25 71.60 3 417170 Transcript 0 8.69 8.06 4.67 10.79 9.75 0.84 13.95 0.00 3.13 3.79 2.30 2.47 4.86 1.22 4.66 4.14 1.92 0.00 1.45 8.64 0.00 2.20 0.79 4 225396 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 490992 Transcript 0 25.52 52.75 29.20 51.89 48.69 47.08 61.02 33.99 21.25 35.85 13.76 32.59 37.03 37.52 39.52 30.69 22.51 19.63 28.26 30.47 12.59 10.23 24.46 6 394392 Transcript 0 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.68 0.00 0.00 0.00 7 ER1a ExonRegion 1 24.17 33.88 6.37 8.86 37.25 67.17 73.43 6.94 9.75 12.33 37.13 0.00 5.99 33.00 45.58 37.78 37.70 22.81 25.90 29.90 17.25 9.43 28.05 8 E1a_E3a KnownJunction 1 145.95 192.79 28.44 41.99 205.77 331.74 394.51 31.13 36.37 54.13 174.68 5.70 20.13 178.12 150.69 201.40 163.63 107.03 142.22 155.89 76.85 45.07 115.15 9 ER2a ExonRegion 0 1.59 3.33 5.35 6.24 5.03 2.06 7.86 6.42 4.98 5.28 7.95 0.67 2.16 5.90 6.49 4.51 9.27 22.06 9.58 10.31 5.08 4.96 2.20 10 E2a_E3a KnownJunction 0 0.00 5.79 11.68 3.90 0.00 0.00 12.01 9.24 7.41 7.12 10.11 0.00 0.00 14.36 10.75 8.63 7.95 27.03 0.00 12.34 2.84 6.00 0.00 11 ER3a ExonRegion 1 35.56 50.87 25.96 31.12 83.19 125.74 128.36 33.92 38.56 44.12 96.47 2.16 31.91 52.86 41.52 60.20 91.88 79.65 56.27 82.68 46.03 15.99 28.31 12 E3a_E6a KnownJunction 1 8.67 14.08 40.95 37.66 39.47 8.06 50.48 39.27 49.77 44.81 164.04 6.30 39.77 51.92 42.77 30.93 152.88 52.23 25.79 78.11 91.62 18.06 8.45 13 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER5a ExonRegion 0 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 1.35 0.00 0.00 0.00 15 ER6a ExonRegion 0 19.62 19.61 50.85 71.77 35.53 24.88 57.70 50.00 45.15 74.17 133.57 47.54 65.75 130.84 110.38 124.97 120.13 119.50 97.02 148.50 61.35 29.56 65.37 16 E6a_E7a KnownJunction 1 17.04 21.31 44.68 63.66 53.74 50.14 79.89 55.61 49.54 49.83 62.70 37.66 76.29 123.73 56.37 128.43 52.08 89.71 62.03 121.63 26.56 19.59 71.88 17 E6a_E8a NovelJunction 0 0.00 0.00 1.33 2.06 4.33 0.00 0.00 2.26 1.53 1.32 0.00 0.00 6.82 0.00 0.00 4.36 0.00 17.74 3.76 5.05 0.00 3.12 0.00 18 ER7a ExonRegion 0 16.69 34.03 47.61 71.21 82.37 121.24 112.32 52.00 42.10 50.65 114.91 71.36 82.86 125.11 71.08 104.32 108.76 102.00 53.62 108.86 54.47 32.71 33.97 19 E7a_E8a KnownJunction 0 26.23 47.89 63.57 92.76 134.97 181.43 186.06 54.92 51.56 62.43 131.40 111.94 159.41 138.38 117.44 99.89 121.36 124.61 95.25 99.84 48.06 49.60 28.94 20 E7a_E9a NovelJunction 0 0.00 0.00 5.50 9.32 21.05 5.79 21.77 0.00 3.39 7.01 4.95 11.70 6.82 4.89 0.00 0.00 0.00 6.88 4.80 3.13 0.00 6.25 4.18 21 ER8a ExonRegion 0 36.81 74.36 68.49 65.03 118.34 221.53 232.82 65.10 60.33 51.96 143.48 114.12 159.16 160.98 132.23 129.09 132.43 117.77 103.59 174.24 43.93 42.24 51.61 22 E8_Da NovelBoundary 0 3.26 29.07 18.92 11.92 7.64 2.73 37.94 5.63 12.38 8.76 7.05 0.00 8.28 0.00 15.58 28.28 4.77 19.32 14.40 23.59 2.84 0.00 7.60 23 E8a_E9a KnownJunction 1 42.60 105.44 75.93 65.83 59.93 80.01 77.33 77.88 43.75 47.73 176.68 31.06 120.61 154.57 101.12 78.70 175.88 81.21 63.81 159.03 56.59 23.51 44.30 24 I8 Intron 0 6.59 9.20 6.18 24.21 8.01 6.26 25.58 6.87 7.33 7.93 2.78 6.18 10.44 2.24 4.54 5.70 5.44 4.30 3.24 15.61 3.10 2.62 4.66 25 I8_AR1 ActiveIntronRegion 0 7.87 13.51 7.03 23.07 8.43 8.76 29.96 12.70 8.67 8.69 8.56 6.20 17.97 4.62 10.10 12.44 12.54 10.33 5.24 20.88 3.23 2.58 7.40 26 I8_SR1 SilentIntronRegion 0 6.09 8.42 6.15 23.73 7.74 6.01 24.50 6.03 7.38 7.84 1.77 6.26 9.31 1.90 3.60 4.67 4.41 3.41 3.01 14.96 3.29 2.72 4.27 27 I8_AR2 ActiveIntronRegion 0 9.57 9.25 4.96 31.79 10.26 4.22 28.90 4.58 4.32 7.63 2.35 5.36 8.11 1.29 3.85 3.61 2.67 2.14 1.87 12.58 0.87 1.69 3.57 28 E9_Aa NovelBoundary 0 6.37 18.29 6.92 37.56 15.79 7.33 30.96 7.35 8.54 11.66 4.47 6.00 20.13 0.00 19.41 16.49 0.00 12.39 0.00 23.20 2.72 5.63 7.85 29 ER9a ExonRegion 0 57.48 88.38 92.88 110.21 81.34 80.98 130.19 84.84 50.59 88.15 165.41 89.22 142.27 179.87 151.20 120.75 147.75 91.50 51.41 186.91 64.60 40.50 44.44 30 E9a_E10a KnownJunction 0 78.98 88.87 101.12 145.10 177.93 100.28 157.18 106.09 56.77 95.20 149.35 140.15 204.86 175.94 225.85 136.63 151.85 87.80 78.68 262.89 53.38 63.56 25.87 31 E9a_E11a NovelJunction 0 3.33 0.00 1.36 2.70 10.95 4.43 2.25 15.65 1.65 4.65 9.84 6.30 5.84 9.42 14.09 6.66 12.44 5.55 3.67 2.49 8.53 3.00 7.60 32 E10_Aa NovelBoundary 0 30.52 17.23 1.27 5.06 3.65 2.90 6.54 3.98 1.79 2.87 2.53 0.00 13.47 0.00 0.00 3.67 3.93 4.44 0.00 8.56 5.62 0.00 0.00 33 ER10a ExonRegion 0 47.04 73.21 85.95 106.60 77.96 81.92 110.26 69.47 48.60 82.94 125.64 110.57 150.87 197.98 133.16 116.21 100.29 80.55 48.60 137.25 60.61 32.38 39.03 34 E10_Da NovelBoundary 0 3.63 2.89 6.09 12.02 0.00 0.00 3.71 4.93 1.77 0.99 2.26 0.00 0.00 0.00 5.19 4.36 0.00 1.58 0.00 11.12 3.15 0.00 19.72 35 E10a_E11a KnownJunction 0 67.35 83.21 88.38 121.50 111.55 93.75 144.90 76.19 53.07 105.33 151.09 118.84 203.23 207.55 115.33 116.38 152.31 65.91 67.67 106.10 66.84 59.21 42.51 36 E11_Aa NovelBoundary 0 3.63 3.35 5.29 25.11 0.00 5.39 18.46 4.89 6.25 1.67 7.69 0.00 33.93 0.00 8.90 4.19 0.00 0.00 4.52 8.95 3.15 2.57 4.01 37 ER11a ExonRegion 0 37.37 80.12 81.28 105.82 93.10 112.49 143.31 66.65 57.39 95.43 116.11 127.04 219.15 183.90 124.87 95.72 131.90 63.48 47.56 120.05 43.74 35.88 41.23 38 E11_Da NovelBoundary 0 0.00 3.35 6.77 16.98 0.00 5.05 18.42 9.98 13.11 5.96 12.16 6.30 19.80 4.71 28.18 3.25 7.85 2.45 13.18 40.91 3.15 11.70 7.60 39 E11a_E12a KnownJunction 0 52.01 87.16 84.12 101.95 97.11 105.85 141.50 68.55 64.24 83.73 108.82 146.15 173.69 152.92 88.02 93.99 98.18 46.10 44.99 97.03 21.31 33.92 33.38 40 I11 Intron 0 6.31 6.77 7.25 16.32 12.16 5.85 23.31 11.58 7.96 7.47 3.37 8.84 15.22 3.47 8.85 9.81 11.85 5.74 4.66 19.34 3.77 3.60 8.17 41 I11_SR1 SilentIntronRegion 0 5.78 5.67 5.20 11.79 9.75 4.07 22.82 7.61 6.49 7.20 2.42 7.07 13.68 4.17 7.15 5.75 8.45 3.40 2.54 14.41 1.13 3.56 6.18 42 I11_AR1 ActiveIntronRegion 0 6.21 9.56 3.37 12.66 15.98 7.73 32.92 4.41 5.21 6.99 7.79 8.36 15.18 1.84 6.45 7.47 12.27 2.74 8.37 23.94 0.73 3.10 7.78 43 I11_SR2 SilentIntronRegion 0 6.24 7.77 7.44 16.20 11.35 6.92 26.27 11.35 7.19 8.03 4.66 13.32 17.02 4.50 10.37 15.03 14.78 7.40 5.85 26.51 3.25 4.90 8.66 44 I11_AR2 ActiveIntronRegion 0 4.68 11.65 13.40 26.10 14.47 8.95 33.88 18.12 12.18 14.46 8.38 21.38 9.59 9.79 7.87 20.40 22.41 11.48 9.60 33.46 7.11 1.10 14.55 45 I11_AR3 ActiveIntronRegion 0 4.45 4.30 10.34 15.69 8.11 5.43 19.23 8.93 7.58 6.40 2.82 9.45 12.17 4.40 8.79 11.38 15.61 11.76 2.55 19.74 5.49 4.42 10.42 46 I11_SR3 SilentIntronRegion 0 3.35 6.35 6.08 12.70 8.43 3.58 19.63 9.39 6.26 4.84 3.76 8.79 13.85 6.08 9.43 18.32 11.20 11.76 3.81 17.37 12.14 2.61 9.32 47 I11_AR4 ActiveIntronRegion 0 12.59 9.38 9.91 23.66 15.46 7.52 33.91 16.30 10.91 11.26 5.61 9.96 27.67 9.50 16.02 16.21 19.71 11.41 8.97 22.56 8.98 4.18 16.56 48 I11_SR4 SilentIntronRegion 0 8.82 3.14 11.21 16.76 14.66 4.78 22.08 12.94 6.14 6.16 4.82 7.02 15.53 2.30 9.86 5.90 12.77 3.36 1.52 15.71 3.04 3.39 7.35 49 I11_AR5 ActiveIntronRegion 0 4.63 5.30 9.71 23.40 13.75 4.42 20.94 14.67 10.17 6.97 1.64 9.20 30.17 2.57 15.38 6.79 6.94 1.91 1.72 11.87 0.52 3.96 4.09 50 I11_AR6 ActiveIntronRegion 0 5.82 10.65 4.66 17.73 20.14 8.77 32.75 6.20 9.47 6.86 2.83 3.21 12.22 1.30 5.65 9.93 18.15 9.85 8.40 26.89 8.63 2.29 16.27 51 I11_AR7 ActiveIntronRegion 1 2.74 16.45 12.47 25.29 4.80 7.34 33.84 15.56 17.95 9.71 0.00 2.55 15.73 1.29 4.69 7.52 28.35 6.47 12.74 19.34 4.08 2.70 5.44 52 I11_AR8 ActiveIntronRegion 1 4.33 6.42 8.96 18.82 9.66 2.72 14.65 11.53 12.04 3.55 0.60 0.27 7.62 0.08 2.18 3.34 25.32 2.97 1.89 20.38 1.34 6.41 5.05 53 I11_SR6 SilentIntronRegion 0 5.98 7.02 6.66 17.51 13.07 6.75 21.19 14.64 9.89 7.47 1.29 8.68 13.06 1.16 6.78 6.48 7.06 2.62 4.43 16.60 1.74 3.17 6.01 54 ER12a ExonRegion 0 59.82 95.48 77.26 97.87 153.52 124.61 198.57 81.24 49.31 85.80 118.15 128.73 199.84 224.59 120.90 137.00 112.18 47.12 62.76 100.30 36.09 24.16 31.48 55 E12a_E13a KnownJunction 0 117.35 131.69 43.67 81.91 262.73 170.30 245.41 88.88 30.18 71.56 126.35 135.64 198.04 278.65 198.78 132.10 124.36 47.22 82.83 106.61 30.83 35.15 53.52 56 I12 Intron 0 7.05 7.17 5.30 20.70 10.38 3.31 17.28 9.09 9.96 8.38 4.70 10.19 16.29 3.55 8.44 9.09 11.00 5.45 2.37 14.26 5.96 5.39 6.22 57 I12_SR1 SilentIntronRegion 0 7.17 7.29 5.38 21.04 10.55 3.36 17.57 9.24 10.12 8.51 4.77 10.30 16.48 3.59 8.54 9.23 11.18 5.53 2.41 14.50 6.06 5.48 6.32 58 E13_Aa NovelBoundary 0 14.22 11.64 5.65 32.03 27.76 8.29 61.39 9.53 13.89 4.94 9.48 19.96 8.28 6.83 20.27 10.85 12.81 3.94 0.00 14.51 5.37 9.37 13.15 59 ER13a ExonRegion 0 69.94 103.02 67.37 87.22 174.05 102.03 168.17 91.57 51.06 98.43 119.62 180.85 233.44 226.56 129.17 108.75 108.85 40.86 51.18 100.68 37.76 45.74 41.91 60 E13a_E14a KnownJunction 1 84.68 113.53 81.37 97.49 130.56 106.19 138.10 70.48 67.68 116.42 94.76 182.46 233.43 212.90 126.71 87.41 102.76 60.44 20.99 94.85 47.57 33.86 34.23 61 ER14a ExonRegion 0 71.16 72.44 84.75 109.78 87.82 108.36 113.98 88.93 77.29 108.67 119.49 181.80 249.33 230.57 132.07 106.92 139.65 63.52 47.38 110.06 52.39 46.08 52.25 62 E14_Da KnownBoundary 0 10.30 6.38 10.32 13.62 0.00 0.00 11.97 0.00 5.15 0.00 2.68 12.30 6.66 0.00 0.00 11.11 4.21 0.00 0.00 11.31 0.00 2.82 4.35 63 E14a_E15a KnownJunction 0 92.02 76.89 95.74 105.38 125.47 105.79 112.39 87.16 69.53 125.69 145.14 187.71 200.31 232.86 113.73 128.17 194.02 80.54 67.77 114.92 91.68 56.89 41.83 64 ER14b ExonRegion 0 8.69 8.06 4.67 10.79 9.75 0.84 13.95 0.00 3.13 3.79 2.30 2.47 4.86 1.22 4.66 4.14 1.92 0.00 1.45 8.64 0.00 2.20 0.79 65 E15_Aa NovelBoundary 0 2.96 9.08 4.41 13.35 36.08 2.90 28.88 5.05 1.16 3.71 2.42 0.00 12.17 0.00 5.81 3.50 4.77 5.64 0.00 14.32 0.00 3.12 0.00 66 ER15a ExonRegion 0 64.11 89.11 110.93 115.94 86.74 103.02 147.82 95.35 79.96 123.47 153.18 194.53 266.62 252.01 167.10 155.87 141.89 108.17 94.94 146.87 90.69 77.06 75.33 67 E15a_E16a KnownJunction 0 41.04 128.20 114.57 128.82 132.60 161.50 184.56 103.79 100.52 127.33 134.72 159.05 235.86 293.54 234.38 221.82 129.78 151.47 101.56 155.70 73.14 87.38 92.19 68 ER16a ExonRegion 0 47.02 82.69 78.49 109.12 171.37 159.76 187.06 74.93 70.35 101.75 115.99 147.43 231.89 200.15 147.27 114.06 135.86 103.59 49.46 131.42 75.74 47.29 50.14 69 E16a_E17a KnownJunction 1 49.56 56.70 84.33 94.53 115.79 52.13 98.62 54.38 49.71 62.13 80.65 175.26 153.72 162.16 114.10 58.87 81.07 55.22 33.51 109.81 66.90 34.17 67.69 70 ER17a ExonRegion 0 68.02 75.06 86.39 124.39 105.33 96.11 108.32 89.76 67.54 97.98 111.71 152.71 225.76 237.45 179.94 118.21 111.26 112.21 102.95 141.92 66.46 62.51 73.88 71 E17a_E18a KnownJunction 0 109.57 105.24 77.94 127.42 89.22 145.65 166.67 97.96 72.28 101.22 138.93 135.04 222.87 296.96 303.23 155.86 128.47 126.47 150.31 196.86 70.61 87.32 88.69 72 E17a_E19a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 1.82 14.21 0.00 0.00 0.00 0.00 73 ER18a ExonRegion 0 53.51 78.43 98.18 125.61 84.11 98.50 99.42 75.70 60.97 83.45 126.08 69.80 128.91 211.55 139.10 82.09 157.24 100.50 71.50 137.09 75.55 39.92 50.64 74 E18a_E19a KnownJunction 1 54.68 82.29 120.13 134.61 133.28 94.21 127.72 51.22 61.49 62.99 116.56 113.14 114.60 164.28 94.94 61.27 224.03 86.35 27.01 125.60 76.11 35.94 48.66 75 ER19a ExonRegion 0 79.60 95.58 102.95 153.12 187.13 145.40 159.24 65.20 61.73 79.37 111.23 88.22 125.29 158.74 142.95 75.46 123.73 83.78 50.19 105.62 39.31 35.79 41.05 76 E19_Da KnownBoundary 0 51.94 109.78 151.86 191.62 158.15 110.90 97.64 89.01 74.71 95.92 117.40 112.09 85.71 98.30 187.16 62.46 71.72 48.91 76.52 109.04 11.06 34.35 46.78 77 ER19b ExonRegion 0 65.07 83.66 106.49 150.43 151.04 125.22 155.24 68.84 61.64 62.85 101.26 92.83 100.43 83.01 121.67 67.35 100.18 41.06 38.14 87.90 18.78 31.35 24.57 78 E19_Db KnownBoundary 0 95.05 68.74 127.49 162.08 157.56 86.88 148.74 61.90 54.51 57.14 83.81 87.78 95.61 73.22 96.42 71.95 63.86 42.53 32.66 63.53 11.74 37.78 19.89 79 ER19c ExonRegion 0 74.74 49.24 94.83 106.49 88.71 97.97 106.78 52.89 41.40 38.89 67.04 55.97 43.82 60.63 99.22 59.87 51.53 32.70 36.06 58.72 17.52 25.71 21.55 80 E19_Dc KnownBoundary 0 20.74 24.40 14.04 31.90 53.74 47.47 68.14 21.73 22.57 18.29 21.43 30.01 64.28 19.07 47.84 15.64 11.87 7.75 32.28 19.05 7.78 5.51 19.29 81 ER19d ExonRegion 0 24.74 24.88 3.93 19.90 25.34 45.58 51.79 11.72 8.16 10.22 16.40 28.27 37.45 34.08 39.38 29.68 18.11 10.52 31.34 20.84 7.36 8.09 27.08 82 E19_Dd NovelBoundary 1 1124.05 854.39 817.15 1057.44 678.10 431.23 1062.07 1054.08 983.03 953.73 312.13 201.07 270.76 118.43 311.02 966.33 793.92 1566.56 690.75 923.86 433.43 421.90 895.37 83 E19d_E20a KnownJunction 1 14.22 85.18 62.39 93.99 54.67 28.28 76.80 58.53 30.41 60.84 4.95 41.86 38.80 36.38 31.65 23.75 13.09 24.37 25.69 19.81 22.12 9.19 31.84 84 I19 Intron 0 20.76 2.66 4.78 2.66 8.75 21.58 19.04 0.00 3.61 0.00 6.32 2.83 5.05 10.99 24.88 15.55 17.27 8.41 6.25 25.04 0.00 2.72 5.76 85 I19_SR1 SilentIntronRegion 0 14.63 2.81 5.23 2.65 5.90 21.68 16.35 0.00 3.81 0.00 6.48 0.76 0.41 10.84 22.78 14.16 16.50 8.91 2.34 20.53 0.00 0.55 6.05 86 I19_AR1 ActiveIntronRegion 0 25.49 2.54 4.43 2.66 10.95 21.51 21.12 0.00 3.45 0.00 6.19 4.43 8.63 11.11 26.51 16.62 17.85 8.02 9.27 28.53 0.00 4.40 5.54 87 E20_Aa NovelBoundary 1 1368.54 1338.18 3246.13 3616.26 1196.52 826.06 1551.88 4015.77 3679.65 3389.39 511.60 233.93 297.22 224.32 531.93 1172.77 940.44 5291.94 897.53 1382.21 651.07 379.89 1150.95 88 ER20a ExonRegion 0 37.59 48.19 21.29 41.78 66.06 67.39 54.46 31.71 25.18 36.47 19.94 27.62 34.85 42.11 47.55 38.64 36.34 24.01 27.76 50.75 8.30 13.41 14.48 89 IG13 Intergenic 0 5.85 11.93 7.38 19.02 16.82 17.48 14.96 12.17 12.14 12.41 1.68 5.70 4.71 3.64 4.09 2.68 2.64 3.78 4.40 10.29 1.38 1.82 2.46 90 IG13_AR1 ActiveIntergenicRegion 0 25.94 47.24 29.99 75.85 63.67 72.61 57.80 45.76 42.86 49.11 7.48 20.83 12.70 12.71 15.19 8.29 9.79 18.50 15.67 42.53 4.23 7.42 7.47