Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GIT1 Gene 0 39.02 63.11 263.30 72.17 48.44 242.93 49.98 120.00 118.42 169.42 113.33 49.82 54.19 159.46 122.38 75.84 67.56 217.90 126.89 111.32 119.71 70.21 64.82 2 225394 Transcript 0 18.52 6.78 36.36 9.02 8.87 7.38 7.23 17.44 14.50 12.22 110.13 81.48 53.81 144.99 121.02 52.59 69.38 8.73 8.99 5.59 87.01 79.76 51.60 3 335356 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 394869 Transcript 0 23.00 118.56 344.49 108.61 77.21 595.20 89.85 117.35 143.57 241.35 16.95 0.00 0.00 8.95 11.99 4.02 8.79 276.25 240.10 220.29 11.86 15.68 28.13 5 473217 Transcript 0 11.81 5.21 20.49 6.73 7.81 15.42 6.31 8.43 12.78 12.59 8.41 4.21 2.55 13.85 12.37 8.37 4.60 22.33 8.08 6.61 15.32 8.47 12.46 6 394868 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 491377 Transcript 0 6.73 4.62 21.12 4.38 6.45 10.81 5.47 8.52 6.15 10.38 7.45 2.65 0.45 7.59 13.92 5.91 3.38 22.27 7.22 8.21 5.04 1.43 2.40 8 ER1a ExonRegion 0 0.00 0.00 0.82 0.00 0.00 1.07 0.99 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 9 E1_Ab KnownBoundary 0 0.00 0.00 1.60 0.00 0.00 2.61 3.97 0.00 0.00 0.00 0.00 0.00 0.00 4.94 0.00 0.00 0.00 1.91 0.00 0.00 2.59 0.00 0.00 10 ER1b ExonRegion 0 0.00 0.00 1.23 0.00 0.00 3.33 0.74 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 3.95 0.00 0.00 11 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.44 0.00 0.00 12 ER1c ExonRegion 0 1.99 4.17 30.55 8.39 4.18 28.99 4.99 14.38 15.06 25.93 15.28 5.69 8.73 25.85 26.83 9.71 9.62 37.38 19.76 21.95 24.09 6.65 7.37 13 E1a_E2a KnownJunction 1 10.37 9.01 141.18 60.86 7.98 85.18 23.63 68.18 87.61 120.45 43.80 30.91 82.62 71.16 84.43 73.40 35.72 251.25 126.50 104.31 61.53 35.64 52.50 14 ER2a ExonRegion 1 13.54 22.02 242.54 59.90 21.57 119.76 23.01 131.58 125.32 208.92 144.48 48.08 25.38 174.50 168.86 92.03 90.77 277.77 177.74 129.06 169.95 79.06 77.56 15 E2a_E3a KnownJunction 0 12.89 20.19 331.57 90.93 27.08 158.20 20.76 145.20 137.30 189.83 118.50 67.07 26.13 212.26 149.70 88.35 94.53 316.99 120.29 147.01 152.65 90.38 90.23 16 ER3a ExonRegion 0 24.20 39.11 374.31 99.77 22.35 218.38 35.48 183.77 201.05 288.31 202.61 68.77 76.37 250.13 254.80 140.61 126.28 483.44 248.51 209.43 234.04 127.08 120.56 17 E3a_E4a KnownJunction 0 17.26 48.94 313.00 96.69 29.54 258.43 62.80 157.72 161.72 252.56 172.15 67.07 96.91 250.58 203.23 88.87 122.86 316.25 213.56 159.92 182.55 84.44 66.33 18 ER4a ExonRegion 0 39.59 55.87 342.22 104.81 35.31 248.88 56.75 167.83 184.00 266.46 188.10 74.92 68.18 274.77 166.72 102.61 129.38 276.22 180.94 166.50 197.18 79.40 102.68 19 E4_Da NovelBoundary 0 44.90 46.77 366.96 109.48 27.59 257.18 72.25 142.73 179.43 231.47 117.35 47.12 98.53 200.19 168.24 91.94 51.61 176.26 109.09 201.53 129.67 64.97 47.12 20 E4a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E4b_E5a KnownJunction 0 39.27 83.27 323.02 93.79 42.78 349.12 72.38 178.01 202.89 244.60 155.78 119.14 93.83 192.01 178.26 134.67 87.24 327.98 203.68 224.29 229.81 135.75 95.78 22 ER4b ExonRegion 0 30.95 63.13 359.08 102.27 26.09 278.51 66.86 165.93 198.80 251.27 146.01 77.57 103.57 230.08 188.58 118.27 69.46 240.44 152.50 223.14 200.54 95.32 88.47 23 ER5a ExonRegion 0 23.94 90.47 331.63 97.52 59.96 328.08 65.07 158.22 175.86 251.29 169.41 94.06 66.89 263.57 179.03 113.77 91.26 329.68 182.54 209.38 200.14 110.46 107.96 24 E5a_E6a KnownJunction 0 26.82 159.12 388.69 107.35 80.05 401.08 92.39 147.29 172.08 270.85 162.57 65.27 99.34 278.24 192.22 107.75 68.63 355.59 125.56 185.36 148.76 102.57 64.96 25 ER6a ExonRegion 0 30.59 148.67 409.75 116.23 57.91 457.87 92.77 172.32 187.87 295.68 184.11 87.64 62.85 274.36 169.13 114.38 84.75 372.86 218.78 198.27 211.81 108.63 107.42 26 E6a_E7a KnownJunction 0 103.57 210.69 466.54 157.06 132.43 798.46 165.43 221.18 217.47 287.40 248.01 156.20 119.96 326.09 241.67 216.35 110.05 448.53 337.42 254.84 245.69 152.90 189.93 27 ER7a ExonRegion 0 67.53 145.47 498.90 169.54 100.56 653.00 133.66 218.31 219.42 338.58 248.40 141.97 114.41 310.13 248.43 154.83 112.54 465.89 320.02 234.73 216.53 164.40 160.08 28 E7a_E8b KnownJunction 0 17.11 119.12 294.67 114.07 64.26 560.98 110.80 107.08 111.66 214.76 13.00 0.00 0.00 4.94 6.30 3.67 8.88 264.64 273.51 226.14 11.68 25.11 40.29 29 E7a_E8d KnownJunction 0 37.04 13.55 71.91 18.05 17.74 13.69 13.47 34.87 28.99 24.44 220.27 162.95 107.62 287.54 242.04 105.19 138.76 17.45 17.98 11.19 173.29 159.51 103.20 30 E8_Aa NovelBoundary 0 23.34 5.79 21.94 8.26 16.47 40.49 13.60 14.54 9.87 11.52 4.37 19.51 0.00 51.09 27.94 6.84 0.00 19.44 0.00 0.00 41.39 6.12 27.83 31 ER8a ExonRegion 0 7.76 3.97 10.14 5.00 12.21 13.19 3.90 7.44 9.75 7.56 10.77 6.25 4.07 15.66 10.40 11.84 3.64 12.59 3.54 3.17 17.44 5.35 11.39 32 E8b_E8d KnownJunction 0 28.89 118.01 394.31 103.15 90.15 629.41 68.89 127.62 175.49 267.95 20.90 0.00 0.00 12.95 17.68 4.36 8.70 287.85 206.69 214.44 12.05 6.25 15.96 33 ER8b ExonRegion 0 25.01 116.28 468.31 155.25 96.81 614.66 96.77 171.12 192.90 345.32 34.09 5.12 6.82 11.37 13.72 22.97 10.50 421.12 279.73 219.92 41.27 28.41 50.46 34 ER8c ExonRegion 1 27.37 122.42 512.61 158.19 92.58 615.67 85.53 191.51 215.98 366.02 41.11 7.22 1.25 14.94 14.70 23.58 9.90 438.90 250.37 232.91 42.16 18.89 49.92 35 ER8d ExonRegion 0 4.70 2.38 14.52 4.32 3.75 9.28 6.59 1.80 8.82 10.85 4.89 2.94 1.69 9.10 12.36 9.63 2.38 28.92 10.23 4.83 22.43 9.79 16.56 36 E8_Ac KnownBoundary 0 9.71 3.09 25.96 4.13 16.81 6.93 5.87 11.09 7.64 8.95 10.37 5.40 0.00 7.06 0.00 14.87 3.74 34.24 3.48 8.44 21.07 5.82 6.74 37 ER8e ExonRegion 0 14.61 6.88 27.81 8.77 10.35 18.76 5.49 12.02 14.45 12.80 15.16 4.07 5.71 16.61 7.66 5.91 9.03 25.71 14.93 7.64 21.67 12.07 11.39 38 E8_Ad KnownBoundary 0 27.63 6.45 17.06 12.12 8.23 30.55 10.42 3.90 21.24 6.74 7.58 0.00 6.98 17.42 13.35 16.58 0.00 21.68 18.92 3.07 37.62 17.94 31.50 39 ER8f ExonRegion 0 63.01 121.89 620.14 176.78 72.19 636.40 84.51 273.64 279.73 396.30 236.22 115.63 91.85 343.30 245.28 151.14 138.78 435.88 252.57 248.27 254.67 136.34 142.92 40 E8c_E9a KnownJunction 0 54.23 141.16 562.69 171.27 78.52 640.88 96.72 286.98 242.76 350.58 218.90 111.64 76.94 350.70 266.77 204.48 136.70 403.09 288.76 243.72 235.68 141.88 97.57 41 ER9a ExonRegion 0 41.40 103.71 554.52 176.19 59.71 473.17 86.42 258.39 237.14 372.82 242.91 82.14 89.05 340.02 229.80 159.40 123.22 428.48 282.14 247.36 230.42 128.24 109.58 42 E9a_E10a KnownJunction 0 50.75 134.19 650.60 203.34 60.10 464.11 110.36 274.05 264.44 418.48 278.75 109.99 144.96 334.98 231.41 151.07 131.09 521.90 407.35 253.37 248.47 207.21 187.29 43 ER10a ExonRegion 0 42.07 133.82 556.14 179.72 66.59 420.89 100.81 278.48 242.66 353.05 245.34 129.18 112.32 318.77 220.20 129.41 129.71 456.51 306.41 223.14 261.09 141.93 146.50 44 E10a_E11a KnownJunction 0 62.97 194.77 517.99 121.66 103.06 567.97 127.41 237.53 258.33 356.27 223.48 74.42 87.17 337.28 186.41 167.99 108.09 429.25 257.42 214.06 262.31 89.22 140.42 45 E10a_E12a NovelJunction 0 0.00 2.76 2.78 1.47 0.00 0.00 0.00 2.55 1.62 0.00 2.11 0.00 0.00 7.42 0.00 0.00 0.00 2.57 0.00 0.00 6.24 9.00 0.00 46 ER11a ExonRegion 0 56.03 128.50 464.08 119.86 110.64 596.95 111.47 228.88 197.65 316.15 221.89 95.48 98.83 320.44 217.52 158.93 109.28 414.39 261.11 225.59 232.77 138.70 123.86 47 E11a_E12a KnownJunction 0 75.64 131.62 441.29 111.51 78.78 499.20 115.13 205.86 207.90 259.19 175.62 85.98 62.33 285.01 153.04 147.40 102.85 442.47 256.48 188.43 223.26 111.38 103.80 48 E12_Ab NovelBoundary 0 57.42 125.24 461.52 123.23 64.01 545.48 100.96 178.84 196.67 251.45 161.67 74.12 119.31 248.93 277.40 118.26 103.97 381.45 303.82 228.06 211.77 99.99 101.92 49 ER12a ExonRegion 0 54.30 104.57 413.80 101.80 65.97 477.78 89.37 173.44 192.77 251.61 181.17 82.09 97.05 279.72 170.50 126.43 97.00 365.07 251.28 194.84 213.00 102.65 87.87 50 ER12b ExonRegion 0 51.40 95.62 376.10 101.52 62.81 360.38 74.63 163.61 188.79 256.30 164.78 67.71 90.46 269.68 161.18 118.17 86.77 326.08 168.26 206.66 173.42 88.92 103.63 51 E12a_E13a KnownJunction 0 46.97 88.93 391.56 131.62 67.83 346.56 98.22 179.49 206.42 257.26 141.51 90.48 76.62 274.30 189.75 152.52 68.16 423.24 172.71 223.20 156.73 115.18 160.06 52 E13_Aa NovelBoundary 0 17.19 9.74 37.08 3.56 7.30 26.92 9.01 14.66 4.57 10.93 12.27 0.00 0.00 7.00 24.11 7.86 13.09 40.13 8.85 11.51 5.62 5.94 7.17 53 ER13a ExonRegion 0 62.18 109.88 480.99 125.17 74.12 411.87 105.25 199.81 204.59 291.38 197.52 73.15 54.04 281.44 204.36 144.18 108.28 361.10 177.13 204.27 202.42 106.33 97.70 54 E13_Da KnownBoundary 0 10.22 3.16 21.67 3.33 3.40 5.11 4.50 5.79 0.00 1.02 2.16 0.00 0.00 2.35 0.00 3.25 4.77 12.10 4.24 9.46 6.18 0.00 0.00 55 E13a_E13b KnownJunction 0 33.27 109.26 494.19 126.39 109.68 466.83 126.31 180.11 205.90 256.26 192.79 54.92 39.45 263.35 162.06 122.45 117.16 345.10 124.33 146.63 218.94 83.46 72.90 56 ER13b ExonRegion 0 5.00 3.14 20.80 6.28 3.64 13.88 5.92 7.23 5.94 13.97 8.00 0.72 0.52 9.14 17.77 8.75 4.49 23.10 4.25 9.90 5.48 1.53 0.73 57 E13_Ab KnownBoundary 0 2.74 3.35 14.13 3.43 3.57 18.63 0.00 6.78 8.30 17.33 10.53 0.00 0.00 2.47 16.19 7.69 0.00 22.88 7.81 17.32 5.68 5.14 4.01 58 ER13c ExonRegion 0 53.09 97.42 511.68 126.74 96.37 366.79 86.56 204.96 200.13 296.95 174.46 43.95 46.57 262.90 212.42 130.35 110.91 346.45 184.21 192.08 189.67 112.24 103.18 59 E13_Db KnownBoundary 0 3.04 8.68 21.08 1.70 7.30 0.00 6.27 3.57 5.70 2.63 11.79 0.00 0.00 0.00 4.45 0.00 4.49 13.97 9.60 6.52 2.90 2.39 0.00 60 E13b_E13c KnownJunction 1 71.35 118.73 504.92 96.82 173.51 504.99 143.26 240.00 196.70 269.02 168.52 55.82 26.30 261.76 169.85 136.80 85.55 379.96 207.63 228.57 194.23 109.12 109.18 61 ER13d ExonRegion 0 8.47 6.10 21.45 2.48 9.26 7.75 5.03 9.81 6.37 6.79 6.91 4.57 0.37 6.04 10.07 3.07 2.26 21.45 10.20 6.53 4.61 1.33 4.06 62 E13_Ac KnownBoundary 0 14.30 6.31 24.10 0.00 4.07 2.33 6.09 8.42 8.16 3.81 11.37 11.85 0.00 7.53 25.71 0.00 0.00 28.02 13.93 3.13 3.03 0.00 7.00 63 ER13e ExonRegion 0 57.23 113.38 481.39 108.11 94.51 482.74 106.97 196.46 205.61 281.71 197.12 60.61 66.72 285.14 185.79 135.32 110.42 387.19 157.83 196.07 217.92 124.11 94.03 64 E13c_E14a KnownJunction 0 83.42 132.61 537.74 132.22 71.31 520.89 117.30 169.02 208.10 308.24 197.16 85.23 72.72 276.36 184.93 123.13 97.15 385.43 176.19 177.69 244.51 140.96 86.30 65 ER14a ExonRegion 0 79.72 125.89 384.39 78.14 85.69 399.75 74.80 150.48 157.51 230.86 200.56 48.65 75.10 256.92 199.88 119.52 109.64 309.48 173.60 141.31 186.08 139.30 115.93 66 E14b_E15a KnownJunction 1 98.54 130.11 299.75 56.10 44.99 312.83 62.14 136.32 114.26 172.83 121.14 78.63 85.38 145.51 178.75 34.52 101.17 178.62 138.92 73.31 103.29 113.83 85.96 67 ER14b ExonRegion 1 54.32 77.95 232.41 56.79 42.81 267.73 47.22 122.14 108.69 160.95 99.87 59.17 60.97 167.28 143.13 28.73 99.03 148.44 91.31 70.92 113.12 107.65 64.61 68 ER15a ExonRegion 0 92.53 111.57 398.44 113.03 75.28 355.21 85.90 187.19 192.69 277.66 195.93 104.78 113.19 288.19 215.36 99.16 140.82 218.08 165.77 176.80 173.38 153.36 86.95 69 E15_Da KnownBoundary 0 8.96 2.63 26.08 8.22 11.88 15.05 11.61 19.06 20.40 16.57 10.00 5.40 0.00 2.47 8.90 7.86 15.99 32.29 4.61 15.53 3.15 8.33 3.33 70 E15a_E15b KnownJunction 0 202.33 176.68 618.93 198.04 185.82 621.91 141.23 295.36 297.54 405.72 277.12 126.94 94.64 324.92 211.01 183.80 121.74 364.54 228.62 236.05 257.49 188.48 114.22 71 ER15b ExonRegion 0 22.96 9.28 36.81 10.87 7.48 23.78 8.42 16.05 19.76 19.35 9.58 3.44 1.88 16.78 14.36 3.64 7.80 25.46 10.47 11.84 6.07 10.26 9.42 72 E15_Ab KnownBoundary 1 74.83 17.83 55.00 24.27 39.98 54.91 7.99 27.23 28.67 28.55 10.74 0.00 0.00 32.67 41.04 0.00 29.45 42.24 13.37 23.39 7.85 5.57 6.91 73 ER15c ExonRegion 0 147.96 199.23 758.70 205.41 160.24 711.03 144.06 358.77 357.05 452.90 356.35 149.49 161.21 412.04 316.99 181.09 213.42 562.49 305.23 266.76 302.45 216.59 158.16 74 E15b_E16a KnownJunction 0 113.72 164.84 843.11 269.43 310.87 1220.55 242.63 356.77 377.72 507.80 370.15 220.57 229.86 413.09 282.71 203.11 213.93 649.62 314.74 312.17 326.37 178.43 147.25 75 E16_Aa NovelBoundary 0 24.60 2.83 15.17 6.46 4.24 39.52 0.00 11.34 7.67 8.89 4.58 0.00 0.00 4.94 0.00 0.00 4.77 17.74 8.66 6.52 2.41 8.33 3.50 76 ER16a ExonRegion 0 79.63 139.90 704.61 203.16 193.41 820.28 131.28 320.09 328.06 402.65 279.49 226.49 207.90 411.16 303.82 174.98 207.80 557.27 358.70 262.03 266.13 216.36 155.64 77 E16_Da NovelBoundary 0 18.08 15.06 48.82 3.90 4.33 21.81 2.25 15.48 4.69 10.48 7.53 0.00 6.82 16.78 5.07 4.36 0.00 32.17 4.42 9.27 0.00 3.12 3.59 78 E16a_E17a KnownJunction 0 81.72 164.71 700.60 200.37 109.00 520.78 95.08 351.72 312.64 390.49 193.52 207.22 183.43 353.58 301.75 167.73 171.11 605.63 311.73 260.14 217.95 217.75 220.32 79 I16_SR1 SilentIntronRegion 0 14.82 7.37 35.13 6.81 7.92 39.27 9.87 10.23 10.14 12.71 6.20 2.89 8.21 18.61 16.92 14.37 0.00 26.64 13.01 8.16 8.08 5.04 5.26 80 ER17a ExonRegion 0 109.58 154.20 703.34 190.78 143.72 560.51 112.61 337.32 299.11 431.74 283.59 132.45 216.69 374.99 329.99 187.61 188.11 557.34 330.70 239.53 287.33 168.12 167.13 81 E17_Ab KnownBoundary 0 183.44 160.76 940.77 337.49 182.94 623.90 104.09 494.53 416.58 602.06 183.68 110.89 204.69 349.64 334.38 259.25 151.47 870.73 355.96 212.97 276.70 186.03 184.38 82 ER17b ExonRegion 0 127.75 108.11 437.78 119.88 73.96 446.59 88.75 189.90 170.74 248.64 137.60 79.70 138.37 250.64 213.68 139.76 104.47 306.94 239.44 147.74 194.18 92.51 86.41 83 E17_Da KnownBoundary 1 20.15 48.15 249.05 58.47 31.41 132.99 20.36 103.88 69.47 100.84 36.38 5.25 66.23 90.77 54.02 51.70 26.46 159.60 37.65 48.64 47.63 47.70 23.30 84 ER17c ExonRegion 0 12.05 13.63 16.06 4.38 7.58 39.08 8.87 7.14 4.54 7.63 2.27 2.42 3.47 9.75 8.29 8.09 2.16 21.74 11.13 5.21 3.89 5.34 5.44 85 ER17d ExonRegion 0 0.00 0.00 0.41 0.00 0.00 0.31 0.22 0.00 0.00 0.00 1.93 0.00 0.00 0.00 1.93 0.00 1.10 1.85 0.00 0.00 0.00 0.00 0.00