Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PCGF2 Gene 0 30.43 64.92 131.57 78.32 38.88 87.16 67.08 90.90 87.56 105.60 125.27 17.89 83.23 36.41 50.41 3.67 65.55 145.68 145.86 155.56 109.12 86.92 88.97 2 360797 Transcript 0 82.97 179.09 361.24 225.98 119.44 241.93 191.36 247.20 233.36 276.93 335.15 48.31 212.51 101.75 129.84 9.16 176.91 381.49 437.74 417.98 286.84 247.50 248.06 3 IG31 Intergenic 0 1.01 0.54 5.93 1.62 1.71 1.76 2.47 4.53 6.37 7.19 9.78 0.95 1.12 2.35 2.03 0.32 1.41 9.58 3.39 9.29 1.53 4.33 6.10 4 IG31_AR2 ActiveIntergenicRegion 0 1.09 0.58 6.89 1.85 2.08 2.22 3.02 5.66 7.05 8.32 11.39 1.27 1.08 2.88 2.14 0.30 1.59 12.14 3.58 10.48 1.73 5.54 7.23 5 ER1a ExonRegion 0 1.02 0.20 0.36 0.42 0.07 3.17 0.75 0.60 0.49 0.20 3.06 0.00 3.58 2.10 2.32 0.00 0.00 1.95 4.23 0.91 3.33 0.00 0.08 6 E1a_E2a KnownJunction 0 0.00 6.58 0.00 4.10 0.00 9.03 4.15 5.05 0.00 4.38 5.58 0.00 0.00 4.83 4.45 0.00 0.00 13.31 23.62 2.88 9.02 0.00 0.00 7 E1a_E3a NovelJunction 0 13.93 17.89 5.44 4.63 11.88 23.34 35.77 0.00 0.00 12.81 2.63 0.00 13.47 2.24 4.45 3.76 12.81 2.11 23.15 18.15 12.17 8.88 16.48 8 E2_Aa NovelBoundary 0 0.00 2.70 34.56 10.29 7.56 18.11 11.97 22.63 15.25 19.50 9.32 0.00 6.82 0.00 0.00 0.00 0.00 14.80 54.12 14.51 5.19 11.14 12.04 9 ER2a ExonRegion 0 2.39 11.30 19.90 7.14 12.92 16.27 16.66 8.31 15.45 11.84 15.98 0.00 9.13 3.28 2.59 0.00 17.71 19.25 25.00 31.30 23.60 5.35 6.09 10 E2a_E3a KnownJunction 0 0.00 13.42 18.10 4.43 3.23 35.95 8.92 14.42 9.37 11.77 13.00 0.00 6.82 0.00 4.45 0.00 8.79 16.79 32.75 18.66 13.90 24.13 8.45 11 I2 Intron 0 3.77 6.82 20.87 13.20 10.74 17.78 21.00 12.01 16.45 14.35 12.75 1.66 4.16 4.80 5.67 0.97 8.52 28.34 19.36 30.63 7.59 5.04 7.27 12 I2_AR1 ActiveIntronRegion 0 2.05 3.30 24.58 8.52 9.37 6.48 16.30 15.77 15.36 16.67 18.91 4.19 4.69 17.00 10.43 4.46 19.08 49.60 21.90 42.69 5.92 3.65 4.96 13 I2_AR2 ActiveIntronRegion 0 2.38 8.98 19.74 7.59 9.22 13.47 17.13 9.92 13.85 15.41 21.83 0.73 5.69 6.04 7.50 2.44 9.36 28.19 18.33 33.97 8.74 5.48 9.92 14 I2_SR2 SilentIntronRegion 0 3.33 9.32 12.93 12.42 12.27 20.49 20.78 11.28 15.59 12.44 10.87 1.19 3.56 3.58 5.06 2.97 7.22 25.66 25.37 28.74 7.20 3.81 11.13 15 I2_AR3 ActiveIntronRegion 0 1.76 5.42 5.11 7.27 12.49 36.68 13.90 5.19 7.00 8.03 3.87 0.00 4.69 3.25 0.00 0.00 1.65 17.86 15.93 36.52 6.61 2.08 6.85 16 I2_AR4 ActiveIntronRegion 0 5.40 9.31 7.52 6.81 4.80 16.82 21.46 3.00 10.27 5.70 6.57 0.00 7.53 2.91 1.98 0.84 6.55 16.92 11.89 18.76 5.02 6.13 4.40 17 I2_SR3 SilentIntronRegion 0 1.85 4.07 10.96 10.69 22.14 29.19 26.39 9.30 7.26 6.65 8.36 0.76 3.66 1.94 3.99 0.52 2.76 16.40 14.95 14.93 8.26 4.68 6.50 18 I2_AR5 ActiveIntronRegion 0 2.18 4.48 24.89 12.86 8.50 15.91 18.97 13.88 15.92 13.44 10.30 3.26 3.09 3.93 5.69 0.17 6.45 29.15 13.12 33.88 6.73 4.18 8.45 19 I2_AR6 ActiveIntronRegion 0 7.30 11.20 34.21 30.30 23.23 35.68 48.09 21.93 25.70 19.58 15.29 1.50 12.56 6.76 7.05 0.94 10.52 50.53 29.78 55.01 16.18 9.31 6.64 20 I2_AR7 ActiveIntronRegion 0 8.77 2.03 7.47 4.74 2.55 8.30 29.88 10.04 15.94 13.76 11.97 0.00 0.00 3.17 8.70 0.00 5.97 26.75 23.36 32.93 4.41 10.02 4.89 21 I2_AR8 ActiveIntronRegion 0 6.99 4.21 21.90 15.46 8.51 21.23 23.71 12.54 17.62 12.51 14.94 0.00 0.91 3.33 3.66 1.05 10.22 39.01 14.70 20.28 10.73 3.84 4.05 22 I2_SR5 SilentIntronRegion 0 5.33 8.77 19.49 13.23 6.54 20.48 15.27 12.42 15.62 15.21 17.18 0.00 1.22 6.41 3.22 0.00 3.24 27.03 22.47 21.28 12.12 1.00 7.23 23 I2_AR9 ActiveIntronRegion 0 2.83 6.62 27.19 17.31 15.09 15.73 26.75 9.37 18.99 17.01 16.58 1.62 2.88 8.45 4.12 1.75 13.92 23.31 18.65 30.71 7.67 3.61 5.63 24 I2_SR6 SilentIntronRegion 0 5.27 6.91 26.52 19.58 9.74 18.64 20.04 13.34 19.25 18.71 12.35 0.62 2.43 4.52 5.94 0.24 9.70 30.04 19.27 34.85 7.05 7.34 8.87 25 I2_AR10 ActiveIntronRegion 0 12.48 12.87 36.78 15.56 10.50 26.63 32.59 18.55 31.43 30.06 16.33 2.71 6.02 3.73 8.10 0.00 4.04 32.98 31.47 54.11 10.33 7.43 13.11 26 I2_AR11 ActiveIntronRegion 0 5.15 11.26 32.04 16.57 15.97 25.64 26.57 19.85 28.98 21.37 17.29 1.87 3.59 3.44 8.50 0.00 13.61 25.96 31.47 44.35 5.27 4.86 7.83 27 I2_AR12 ActiveIntronRegion 0 4.65 11.17 22.35 12.43 14.70 18.13 19.74 15.36 18.20 16.36 13.35 3.76 6.06 5.34 7.66 1.87 12.43 33.00 26.99 28.71 9.34 5.56 11.06 28 E3_Aa NovelBoundary 0 27.49 3.09 12.06 5.56 8.57 33.56 31.53 20.50 12.79 10.74 25.69 0.00 8.28 4.59 8.90 0.00 9.26 23.63 30.87 24.54 5.62 8.51 10.76 29 ER3a ExonRegion 0 44.15 117.77 135.43 81.71 54.92 97.37 67.52 97.32 81.23 100.24 140.49 21.13 56.65 46.58 54.99 4.99 69.69 144.81 210.97 224.54 133.34 84.68 85.24 30 E3a_E4a KnownJunction 0 91.42 200.56 258.21 182.69 89.30 161.61 144.63 181.38 153.04 189.22 212.58 29.56 63.15 75.40 75.04 11.19 110.43 226.67 483.68 334.29 226.11 143.35 177.56 31 E4_Aa NovelBoundary 0 3.41 17.37 37.55 24.54 3.90 25.10 22.39 26.90 11.66 15.53 4.63 0.00 6.82 2.30 4.45 0.00 17.20 43.44 0.00 12.08 11.49 3.12 4.01 32 ER4a ExonRegion 0 76.52 209.19 353.01 204.66 134.34 161.30 175.46 213.69 204.72 260.95 315.00 29.77 90.95 92.34 96.10 10.14 156.13 311.03 312.92 434.52 271.72 145.05 159.49 33 E4a_E5a KnownJunction 0 121.13 241.21 448.62 259.64 183.87 286.54 209.38 300.79 223.00 261.66 270.49 57.32 229.53 120.67 100.01 7.43 149.13 342.32 296.48 517.09 303.70 247.63 219.38 34 ER5a ExonRegion 0 93.47 195.99 419.71 256.30 172.54 288.20 261.67 263.68 237.74 293.08 365.32 69.43 174.12 121.14 131.59 7.48 178.78 315.83 428.83 459.65 340.91 293.22 221.30 35 E5_Da NovelBoundary 0 0.00 0.00 27.14 21.38 20.63 7.04 28.18 11.05 21.87 16.36 6.90 0.00 0.00 0.00 0.00 4.02 8.70 23.17 21.27 11.82 12.11 3.12 6.91 36 E5a_E6a KnownJunction 0 149.06 214.57 473.87 312.81 193.72 401.02 387.17 322.92 269.56 344.02 275.02 55.37 162.65 118.55 124.11 3.59 210.85 354.38 616.58 406.26 312.22 260.43 223.22 37 ER6a ExonRegion 0 56.32 155.11 381.50 235.24 143.18 293.66 233.48 209.75 214.28 309.87 269.13 44.57 165.90 101.81 127.54 7.93 191.65 228.18 465.25 332.46 286.09 214.03 218.52 38 E6_Da NovelBoundary 0 6.22 2.57 44.97 17.01 18.68 8.12 31.22 9.12 45.98 20.55 22.22 0.00 0.00 0.00 8.90 4.36 4.58 23.46 19.20 41.55 12.05 5.69 11.52 39 E6a_E7a KnownJunction 0 68.60 189.70 403.09 247.85 194.06 298.12 244.79 191.16 248.67 291.51 302.55 45.76 180.51 94.47 124.98 3.16 149.98 322.76 419.49 437.13 277.44 195.95 211.87 40 I6 Intron 0 4.19 5.54 30.29 10.06 10.60 16.80 27.86 15.94 23.24 17.35 11.48 0.00 5.19 3.93 5.07 2.21 9.81 28.19 17.35 17.91 8.73 6.71 10.18 41 I6_SR1 SilentIntronRegion 0 4.23 5.59 30.56 10.15 10.70 16.96 28.13 16.10 23.47 17.52 11.60 0.00 5.24 3.96 5.12 2.23 9.90 28.44 17.52 18.09 8.80 6.77 10.26 42 E7_Aa NovelBoundary 0 11.34 0.00 38.76 35.43 20.20 13.46 41.16 9.04 32.38 18.16 20.53 0.00 0.00 4.94 0.00 0.00 8.42 31.63 20.89 17.77 14.15 2.51 7.34 43 ER7a ExonRegion 0 95.46 207.93 508.52 290.01 154.46 295.61 212.57 343.63 332.40 368.42 463.01 54.81 259.24 142.52 167.95 11.81 223.43 551.39 535.17 534.26 389.49 300.85 351.83 44 E7_Da NovelBoundary 0 9.78 5.85 49.47 34.03 0.00 30.21 37.63 27.72 18.29 49.59 15.53 6.30 6.49 14.95 0.00 12.39 12.90 35.57 22.02 37.26 25.45 7.90 14.77 45 E7a_E8a KnownJunction 0 182.11 322.05 559.50 372.05 170.88 314.08 236.31 432.06 353.21 397.66 461.70 93.93 351.60 137.21 188.02 6.92 228.33 668.73 763.50 631.89 424.16 453.01 432.62 46 I7 Intron 0 0.88 5.06 7.57 7.58 2.22 6.08 17.57 4.27 2.29 6.38 6.41 1.48 1.60 3.88 6.16 1.23 0.00 8.01 3.96 13.23 6.40 2.59 4.87 47 I7_SR1 SilentIntronRegion 0 1.65 8.86 10.20 9.24 2.99 5.81 24.26 5.57 3.29 8.75 8.98 2.64 0.87 5.20 10.52 1.11 0.00 12.81 5.07 21.46 9.34 3.92 6.87 48 E8_Aa NovelBoundary 0 21.49 11.58 72.26 24.97 26.49 69.28 63.33 27.11 20.57 32.80 10.79 0.00 16.56 9.89 6.30 8.72 4.77 55.30 27.29 42.63 18.10 3.12 4.35 49 ER8a ExonRegion 0 121.72 293.76 587.71 402.55 127.80 319.05 278.30 446.95 385.33 478.15 594.91 83.20 359.68 172.36 214.11 20.43 303.08 739.40 901.23 691.84 431.37 491.29 450.21 50 E8_Da NovelBoundary 0 3.78 9.93 75.72 13.68 20.12 42.82 28.93 19.92 24.07 14.88 16.95 0.00 0.00 2.47 0.00 0.00 9.26 50.90 17.88 33.43 6.05 5.33 8.71 51 E8a_E9a KnownJunction 0 122.32 404.60 697.67 474.66 193.38 442.98 372.69 489.77 488.04 560.45 817.05 92.13 364.10 178.17 255.39 19.14 400.93 745.46 933.58 808.87 482.85 550.98 458.83 52 I8_AR1 ActiveIntronRegion 0 5.07 4.98 6.00 0.00 7.10 13.53 16.32 5.60 4.07 9.57 5.53 0.00 1.37 3.75 6.85 0.00 0.00 13.32 7.19 10.71 13.07 1.83 3.85 53 E9_Aa NovelBoundary 0 12.67 6.31 45.36 20.48 7.13 30.95 36.30 28.30 28.07 30.70 9.16 0.00 6.82 0.00 0.00 0.00 4.11 29.51 25.22 32.66 23.66 11.70 12.55 54 ER9a ExonRegion 0 76.53 251.40 589.35 319.75 176.24 441.68 313.72 403.14 390.45 466.59 722.12 75.45 360.99 147.32 207.14 17.00 306.40 575.79 525.05 697.89 517.37 306.95 316.45 55 E9_Da NovelBoundary 0 0.00 2.83 15.37 15.02 19.10 10.62 10.82 13.92 19.73 16.41 0.00 0.00 0.00 2.35 4.45 4.27 0.00 12.19 16.28 29.66 10.87 6.12 3.84 56 E9a_E10a KnownJunction 0 102.91 234.17 482.24 292.74 193.04 431.85 333.47 359.77 313.36 348.59 542.87 74.42 544.28 176.53 226.71 16.24 288.08 559.08 426.65 564.45 467.84 313.27 397.96 57 I9 Intron 0 8.12 8.92 28.04 26.31 10.09 18.73 13.89 13.07 11.99 20.15 6.23 1.96 5.52 1.62 3.91 0.61 2.26 19.08 11.35 19.25 7.70 4.57 6.84 58 I9_AR1 ActiveIntronRegion 0 10.25 10.46 22.10 24.28 12.55 21.37 13.22 11.69 13.93 15.51 6.14 2.16 3.63 1.79 4.47 0.90 2.00 17.23 8.19 25.44 8.34 3.78 5.77 59 I9_SR1 SilentIntronRegion 0 6.39 7.68 33.11 28.13 8.09 16.62 14.50 14.27 10.43 24.10 6.33 1.80 7.12 1.49 3.46 0.37 2.49 20.71 14.03 14.19 7.22 5.25 7.77 60 ER10a ExonRegion 0 129.03 204.99 515.55 335.98 151.30 357.73 277.49 373.22 408.21 455.01 557.72 83.81 548.10 182.78 282.32 20.36 326.79 762.92 710.02 712.13 510.42 543.95 561.04 61 E10_Da NovelBoundary 0 9.48 6.31 50.80 20.68 10.87 15.16 14.88 19.22 12.59 22.40 2.21 0.00 6.17 2.47 0.00 0.00 0.00 13.68 25.60 17.64 14.21 0.00 7.94 62 E10a_E11a KnownJunction 0 195.44 268.04 700.33 441.57 153.91 400.51 222.80 507.80 547.39 630.91 666.70 98.13 500.78 211.43 321.28 23.75 379.24 1065.43 1047.65 900.15 572.99 600.88 685.47 63 I10 Intron 0 7.81 9.43 56.37 38.51 17.76 31.88 26.22 27.95 27.52 32.41 12.83 2.04 7.99 5.47 8.02 2.51 6.61 32.52 26.85 37.44 14.16 7.47 13.30 64 I10_SR1 SilentIntronRegion 0 7.84 9.46 56.60 38.67 17.84 31.99 26.33 28.06 27.63 32.54 12.88 2.05 8.03 5.49 8.05 2.52 6.64 32.66 26.95 37.60 14.21 7.50 13.35 65 E11_Aa NovelBoundary 0 17.48 12.63 49.91 14.98 8.40 33.56 34.49 11.21 18.72 30.78 18.16 0.00 32.95 7.06 23.36 0.00 13.18 29.68 24.75 70.88 17.61 10.96 3.93 66 ER11a ExonRegion 0 12.77 18.39 33.36 19.33 5.08 24.88 16.51 25.77 24.71 31.10 23.82 5.72 30.96 7.22 15.48 0.76 15.62 45.78 29.96 36.47 25.87 22.43 23.60