Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC107983.3 Gene 0 17.79 33.14 116.50 8.03 79.32 15.97 49.64 152.84 89.17 135.25 11.25 20.15 4.48 4.78 3.67 3.35 18.96 89.44 46.09 78.21 5.65 21.20 3.54 2 425211 Transcript 0 3.55 13.18 23.14 3.34 44.91 24.19 19.17 48.70 40.23 39.26 3.98 8.10 1.03 14.02 1.16 0.00 9.15 37.29 27.42 55.46 3.30 7.28 5.24 3 420856 Transcript 0 2.73 3.76 5.40 0.08 2.19 0.00 3.67 4.64 3.22 6.06 1.55 1.71 0.00 0.00 0.00 0.00 7.50 11.39 13.27 15.73 2.34 6.50 0.00 4 414432 Transcript 0 8.39 9.60 21.59 8.23 10.11 5.82 16.96 21.20 17.78 23.51 4.73 11.75 14.08 7.14 13.04 13.83 10.44 29.50 11.93 25.50 5.98 6.00 9.21 5 412260 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 421108 Transcript 0 0.00 0.00 0.34 0.00 0.01 0.00 0.08 0.02 0.54 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.02 0.01 0.00 0.00 0.00 7 414697 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 ER1a ExonRegion 0 0.01 0.22 0.44 0.00 0.60 0.19 0.19 1.07 1.96 1.18 0.00 0.07 0.01 0.03 0.00 0.00 0.02 0.01 0.00 0.40 0.00 0.02 0.00 9 E1_Da NovelBoundary 0 166.25 142.21 971.61 1570.66 85.99 33.33 239.76 1273.01 1359.62 1158.31 46.27 70.07 70.77 32.73 39.19 98.09 141.28 1113.31 136.10 366.25 69.19 50.52 146.57 10 E1a_E2a KnownJunction 0 0.00 0.00 4.85 0.00 8.23 0.00 0.00 17.42 25.72 14.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.82 0.00 0.00 0.00 11 E2_Aa NovelBoundary 0 17.93 36.51 56.06 55.90 193.89 242.02 143.31 160.85 211.31 136.49 28.48 42.31 27.27 71.58 8.90 10.60 87.98 83.90 90.36 273.57 11.37 24.80 44.22 12 ER2a ExonRegion 1 2.30 2.44 0.93 0.12 7.97 0.29 9.94 6.84 12.98 7.67 0.94 15.78 4.17 18.91 2.64 0.00 6.60 5.38 4.74 29.03 0.39 4.49 0.78 13 E2_Da NovelBoundary 0 3.78 27.63 26.94 33.90 167.83 269.11 165.70 59.02 116.67 64.52 27.16 56.57 6.49 91.71 4.45 0.00 37.87 71.71 87.91 261.68 16.62 40.23 35.43 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.52 0.00 0.00 0.00 0.00 15 E2a_E4a NovelJunction 0 0.00 5.66 33.50 4.06 68.85 2.90 14.49 158.30 132.12 97.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.64 23.81 20.26 0.00 0.00 0.00 16 E2a_E5b NovelJunction 0 0.00 0.00 0.00 0.00 0.00 29.70 0.00 0.00 8.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E3_Aa NovelBoundary 0 11.11 38.02 55.50 73.18 117.06 294.83 154.88 119.44 149.07 107.82 32.01 37.81 8.28 187.59 15.20 12.30 55.45 115.36 116.62 218.85 26.69 35.94 75.63 18 ER3a ExonRegion 0 8.67 31.28 34.94 21.16 96.83 158.99 78.45 94.09 95.32 62.23 20.36 22.85 1.25 78.30 4.39 0.00 30.31 124.77 96.85 184.20 23.64 27.69 29.12 19 E3_Da NovelBoundary 0 13.11 26.51 36.87 46.85 136.93 359.34 127.10 22.96 144.21 52.52 32.69 18.91 7.30 127.55 23.24 0.00 30.29 124.03 101.18 211.25 32.87 46.84 54.72 20 E3a_E4a KnownJunction 0 0.00 17.83 33.91 0.00 52.21 0.00 17.62 86.75 39.55 46.44 2.00 5.70 0.00 0.00 0.00 0.00 16.36 24.58 54.59 43.14 0.00 7.96 0.00 21 E4_Aa NovelBoundary 0 2142.38 76.24 179.00 313.71 198.98 222.03 224.52 242.62 268.40 173.58 20.64 30.16 28.89 31.49 4.57 37.77 27.58 205.82 92.80 361.64 13.78 50.27 47.97 22 ER4a ExonRegion 0 7.73 31.76 46.63 4.50 142.05 58.10 50.79 115.66 87.06 108.31 7.98 19.48 2.14 28.92 3.41 0.00 24.83 105.28 65.16 177.13 2.85 22.10 17.27 23 E4_Da NovelBoundary 0 6.89 23.42 9.49 23.14 20.80 184.72 73.75 15.69 87.47 16.06 21.06 31.81 6.01 62.81 4.45 0.00 27.21 83.16 54.59 148.42 15.07 43.54 28.17 24 E4a_E5b KnownJunction 0 6.74 18.68 40.89 0.00 67.40 0.00 6.14 59.48 43.52 52.25 2.58 0.00 0.00 0.00 0.00 0.00 4.11 60.94 17.13 47.62 2.84 0.00 0.00 25 E4a_E6c NovelJunction 0 0.00 19.80 62.71 0.00 113.33 0.00 62.93 145.85 83.45 92.94 0.00 0.00 0.00 0.00 0.00 0.00 4.58 31.79 13.93 68.46 0.00 9.00 0.00 26 E5_Aa NovelBoundary 0 0.00 20.39 17.98 50.11 104.07 211.64 46.90 21.36 88.43 37.90 12.85 53.27 6.49 38.08 22.00 0.00 13.46 96.96 47.81 86.54 4.76 26.76 42.17 27 ER5a ExonRegion 0 2.73 3.76 5.40 0.08 2.19 0.00 3.67 4.64 3.22 6.06 1.55 1.71 0.00 0.00 0.00 0.00 7.50 11.39 13.27 15.73 2.34 6.50 0.00 28 E5_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER5b ExonRegion 0 3.70 10.07 33.55 1.35 18.45 1.07 14.50 50.24 46.85 44.87 6.38 3.91 0.00 0.00 0.00 0.00 15.10 109.44 37.64 63.13 4.00 15.77 0.00 30 E5a_E6c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 Ix Intron 0 0.84 2.10 11.46 0.81 3.19 11.95 4.10 4.91 4.68 11.00 2.00 2.18 0.00 1.67 0.84 0.00 9.45 29.83 15.94 13.35 2.10 2.81 0.93 32 Ix_AR1 ActiveIntronRegion 0 0.92 1.95 12.53 0.89 3.27 11.46 4.15 5.33 5.07 12.03 2.02 1.78 0.00 1.02 0.92 0.00 10.11 32.45 16.94 14.51 2.26 3.09 1.02 33 Ix_SR1 SilentIntronRegion 0 0.00 3.73 0.49 0.00 2.43 17.24 3.68 0.60 0.67 0.44 1.76 6.61 0.00 8.71 0.00 0.00 2.76 3.06 5.85 1.55 0.44 0.00 0.00 34 I5_SR1 SilentIntronRegion 0 2.14 0.82 15.30 0.66 3.79 2.60 3.75 4.64 6.07 10.34 6.20 5.60 0.00 0.33 0.00 0.00 6.76 51.27 25.71 33.11 1.92 5.77 0.00 35 I5_AR2 ActiveIntronRegion 0 12.67 12.14 1.12 0.00 33.45 1.38 5.43 2.08 0.00 0.00 4.24 16.24 5.79 9.24 8.32 11.15 4.81 15.68 12.74 13.70 3.21 2.67 4.40 36 I5_AR3 ActiveIntronRegion 0 2.10 3.73 29.40 2.19 4.81 0.00 8.53 15.18 17.04 40.27 4.43 8.75 1.84 0.00 0.42 0.00 5.05 15.80 8.78 23.14 0.00 8.37 0.30 37 I5_SR4 SilentIntronRegion 0 5.98 11.83 40.49 0.78 17.99 0.00 17.18 31.29 20.04 58.75 4.98 8.72 3.28 0.00 0.00 0.00 7.82 37.64 24.60 30.09 2.54 10.34 1.13 38 E6_Aa NovelBoundary 0 9.48 8.88 42.81 3.46 28.69 5.68 12.67 40.17 31.28 57.97 0.00 6.30 0.00 0.00 0.00 0.00 0.00 76.03 30.49 38.41 0.00 10.10 0.00 39 ER6a ExonRegion 0 4.93 7.74 33.32 1.06 9.18 0.43 13.14 28.01 23.82 36.88 6.26 8.10 4.93 0.31 0.00 0.54 9.37 33.56 14.90 35.23 2.94 5.52 0.37 40 E6_Ab KnownBoundary 0 29.04 26.71 74.18 7.86 71.22 5.74 39.53 74.63 81.19 106.16 21.69 12.00 6.98 0.00 0.00 8.72 34.97 19.11 4.71 107.76 8.34 5.57 0.00 41 ER6b ExonRegion 0 9.57 8.39 40.62 2.26 21.89 1.90 21.02 40.80 32.62 64.24 5.12 10.32 4.28 0.91 1.25 1.67 15.09 67.53 43.30 42.47 3.95 12.76 1.97 42 E6_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER6c ExonRegion 0 7.64 38.32 112.78 2.43 53.80 0.91 66.31 168.73 121.53 188.40 22.88 21.56 0.00 0.00 0.85 3.98 43.17 235.06 81.83 168.15 12.86 30.18 0.00 44 E6_Ad KnownBoundary 0 100.24 333.16 274.50 289.24 474.62 945.08 344.56 421.01 623.58 471.99 168.78 55.52 39.77 137.09 28.06 89.29 222.72 608.37 333.56 458.61 210.66 184.99 205.30 45 ER6d ExonRegion 0 28.97 113.77 202.68 1.82 197.95 0.54 121.61 296.09 196.15 305.80 30.97 26.22 3.37 0.00 0.10 1.30 61.42 369.55 148.75 205.26 15.97 48.20 0.00 46 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER7a ExonRegion 0 23.10 49.46 197.22 1.93 75.21 0.25 66.62 287.32 189.16 288.17 22.88 19.46 0.51 0.00 0.52 0.44 46.10 232.55 72.54 132.22 8.41 27.66 0.00 48 E7_Da KnownBoundary 0 43.19 104.19 93.61 91.23 54.75 140.60 101.66 153.58 237.87 129.93 13.06 6.00 0.00 17.31 4.57 8.20 27.58 224.59 65.23 81.56 28.73 24.13 23.56 49 ER7b ExonRegion 0 17.62 79.19 122.18 0.70 50.66 0.89 63.83 145.31 106.28 178.15 16.44 12.04 0.00 0.00 0.00 0.00 28.83 109.70 19.17 75.14 4.28 13.04 0.00 50 E7b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 E7b_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 E8_Aa NovelBoundary 0 3.33 0.00 12.48 14.85 0.00 0.00 9.63 18.36 12.88 6.10 0.00 6.45 5.68 0.00 0.00 12.13 13.74 11.61 0.00 11.51 0.00 0.00 0.00 53 ER8a ExonRegion 0 0.00 0.00 1.03 0.00 0.03 0.00 0.23 0.06 1.61 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.07 0.02 0.00 0.00 0.00 54 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER9a ExonRegion 0 18.67 37.26 99.43 1.39 77.12 0.53 40.90 186.62 95.16 183.78 16.11 38.20 0.00 0.00 0.00 0.00 33.35 273.58 78.37 127.30 5.46 19.40 0.00 56 E9_Da KnownBoundary 0 66.16 180.56 190.53 190.75 192.53 615.72 193.87 292.57 371.15 386.57 103.03 25.06 24.84 176.47 73.06 31.87 161.94 465.23 183.91 285.07 161.61 71.03 118.57 57 ER9b ExonRegion 0 12.32 34.82 104.50 0.75 49.14 1.05 38.61 170.21 123.75 199.80 19.90 15.54 0.00 0.00 0.00 0.00 35.85 239.33 80.77 126.65 13.73 21.84 0.00 58 E9_Ab KnownBoundary 0 11.85 48.61 158.39 10.29 116.89 7.89 74.19 199.58 144.18 225.75 44.01 43.66 0.00 0.00 0.00 0.00 63.77 320.19 157.56 204.34 28.85 31.60 0.00 59 ER9c ExonRegion 0 23.61 36.12 213.79 6.29 102.45 0.58 69.44 262.73 203.37 282.91 29.53 16.26 0.00 0.54 1.04 1.41 47.27 338.90 121.66 197.03 20.00 37.98 0.68 60 E9_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 E9b_E9c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 ER9d ExonRegion 0 3.94 2.89 5.06 2.47 5.05 3.66 8.10 7.11 6.74 7.53 1.07 3.15 4.76 4.45 3.80 4.59 3.40 16.16 5.80 8.52 2.60 3.63 4.08 63 E9_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 ER9e ExonRegion 0 25.08 54.77 232.02 12.75 127.36 0.76 104.62 295.68 182.64 266.68 16.77 26.12 3.67 0.74 0.00 0.00 41.01 330.31 122.88 165.19 8.14 38.68 0.00 65 E9_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 E9c_E10a KnownJunction 0 87.87 151.75 269.98 6.93 232.77 0.00 139.69 417.68 244.33 308.97 26.22 73.97 6.01 0.00 0.00 0.00 91.63 385.52 252.52 332.69 8.65 71.83 0.00 67 ER9f ExonRegion 0 16.29 18.16 26.40 21.15 16.09 13.39 29.64 28.48 22.76 26.11 6.86 24.01 32.55 16.67 35.33 36.36 18.57 38.78 15.08 32.74 12.38 8.84 23.19 68 ER10a ExonRegion 0 35.18 79.79 251.12 10.15 167.91 1.61 89.39 318.12 195.65 295.55 25.19 31.25 4.02 0.78 0.00 1.74 55.53 230.41 132.91 228.31 12.49 42.63 0.00 69 E10_Da KnownBoundary 0 102.83 350.92 430.94 374.34 815.87 895.28 360.63 495.48 652.74 478.44 115.92 89.13 38.15 101.12 66.01 82.54 90.51 422.62 175.63 468.45 123.00 148.98 99.53 70 ER10b ExonRegion 0 40.77 74.98 288.85 17.64 203.58 36.33 109.46 377.23 191.10 295.89 19.89 44.53 2.52 2.47 2.09 0.22 23.88 99.35 68.88 126.36 4.81 44.69 1.33 71 E10_Db KnownBoundary 0 10.08 33.94 155.97 1.70 77.42 0.00 27.82 164.87 117.13 145.24 2.16 13.80 6.82 0.00 0.00 0.00 0.00 11.77 8.09 35.41 0.00 5.76 0.00 72 ER10c ExonRegion 0 6.50 16.37 45.70 4.25 28.91 0.18 9.40 57.04 51.48 60.34 1.93 8.98 1.72 0.00 0.00 0.00 0.08 14.69 3.81 11.83 0.00 3.25 0.00