Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC005971.3 Gene 0 32.74 48.49 35.68 49.95 71.42 54.61 43.50 49.57 45.16 30.21 23.16 34.21 39.30 40.44 25.68 50.99 37.23 44.45 25.93 36.01 31.78 19.87 26.30 2 431149 Transcript 0 40.21 60.85 35.44 46.32 89.00 65.45 59.38 52.12 47.04 34.47 20.69 31.39 36.72 37.20 22.94 46.14 29.89 40.40 27.75 37.82 29.34 17.04 20.20 3 414755 Transcript 0 2.72 7.49 10.63 12.01 8.76 8.59 4.52 8.41 4.92 6.32 1.94 2.02 9.37 6.26 7.26 8.91 5.17 13.15 8.67 7.85 3.79 2.39 8.83 4 IG24 Intergenic 0 40.78 93.58 27.73 50.64 57.01 43.64 38.11 48.47 46.74 26.73 22.78 47.10 53.47 31.88 23.02 31.66 50.88 18.35 13.00 40.03 14.99 25.03 17.97 5 IG24_AR1 ActiveIntergenicRegion 0 41.13 94.42 27.97 51.08 57.51 44.04 38.44 48.90 47.16 26.97 22.99 47.53 53.90 32.15 23.22 31.93 51.33 18.49 13.11 40.36 15.12 25.24 18.13 6 ER1a ExonRegion 0 51.77 54.94 48.48 68.38 76.06 54.89 43.84 73.55 69.41 37.37 33.42 59.07 49.30 54.78 33.06 75.67 57.19 69.38 31.80 46.36 51.35 33.90 47.92 7 E1_Ab KnownBoundary 0 30.67 60.25 88.44 103.12 92.61 84.72 69.07 75.70 89.12 30.76 40.91 36.76 81.33 76.52 60.57 86.39 83.50 64.42 42.64 64.88 18.04 34.23 26.12 8 ER1b ExonRegion 0 24.98 37.14 37.79 59.61 89.22 77.02 38.07 48.96 51.79 26.02 37.20 48.62 48.44 65.36 34.05 81.66 58.66 39.62 25.07 42.48 29.98 19.64 11.84 9 E1_Da NovelBoundary 0 131.73 102.28 44.00 24.84 73.17 68.99 46.59 41.20 23.50 25.41 19.48 19.06 55.35 22.54 52.54 51.18 22.35 66.95 30.49 61.17 49.92 24.49 40.89 10 E1a_E2a KnownJunction 0 2.96 12.30 9.52 34.06 44.74 72.00 23.41 26.25 26.33 24.79 14.16 18.31 13.31 42.50 14.34 31.02 22.63 10.49 21.18 18.22 26.32 9.06 0.00 11 E1a_E4a NovelJunction 0 7.33 10.06 8.19 6.89 15.45 19.25 13.91 21.36 13.77 4.03 0.00 6.30 8.28 2.47 4.45 28.11 4.77 2.45 0.00 6.52 5.37 2.63 3.24 12 I1 Intron 0 16.37 19.38 15.70 18.59 26.33 10.91 10.80 14.74 9.84 8.10 2.31 5.55 8.37 4.13 8.54 9.86 5.88 10.84 8.44 14.36 6.01 4.60 8.59 13 I1_AR1 ActiveIntronRegion 0 17.75 26.14 31.98 37.20 23.87 18.89 18.64 23.00 18.30 17.32 8.62 17.80 18.14 15.81 18.23 17.35 11.90 30.62 14.77 27.75 11.35 14.60 19.67 14 I1_SR1 SilentIntronRegion 0 16.61 18.66 14.32 17.01 26.61 9.96 10.14 14.23 9.17 7.39 1.67 4.42 7.37 2.96 7.51 9.24 5.19 8.98 7.87 12.91 5.57 3.67 7.48 15 I1_SR3 SilentIntronRegion 0 6.66 21.42 5.31 6.80 30.19 14.85 6.41 4.35 3.26 0.00 1.10 0.00 7.82 1.10 8.99 4.51 8.31 3.10 5.35 17.42 2.72 0.00 6.20 16 E2_Aa NovelBoundary 1 161.36 766.51 295.64 208.83 385.40 290.80 295.27 92.70 51.01 250.22 91.29 37.51 19.64 43.91 108.41 44.35 38.34 177.42 187.86 350.46 11.24 19.35 22.62 17 ER2a ExonRegion 0 8.85 8.26 5.49 17.32 12.66 15.55 12.28 23.98 18.96 13.96 15.28 9.51 17.02 20.55 8.86 27.75 20.21 8.56 4.00 8.14 17.26 6.32 2.02 18 E2_Da NovelBoundary 1 114.24 661.92 888.29 624.33 244.31 384.55 244.53 389.01 175.69 621.83 247.48 43.06 25.81 120.25 244.02 96.38 120.43 657.70 558.98 884.81 37.07 39.25 20.15 19 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E2a_E4a KnownJunction 0 20.60 0.00 4.52 3.53 0.00 2.44 6.45 25.34 18.61 11.12 5.16 7.05 0.00 6.95 0.00 22.64 4.39 8.42 4.61 3.26 8.59 0.00 0.00 21 Ix Intron 0 14.41 22.93 26.62 24.86 30.58 27.48 23.87 18.06 15.05 14.32 6.48 5.73 10.52 9.90 11.40 14.95 8.38 23.47 11.81 20.00 7.95 4.76 10.59 22 Ix_SR1 SilentIntronRegion 0 14.43 22.98 26.68 24.91 30.63 27.53 23.92 18.09 15.08 14.35 6.49 5.74 10.54 9.92 11.42 14.97 8.40 23.52 11.84 20.04 7.96 4.77 10.61 23 E3_Aa NovelBoundary 0 7.04 20.79 18.54 36.26 49.83 29.76 37.63 16.76 17.91 13.78 7.58 0.00 12.66 14.66 4.45 19.65 28.52 18.86 12.61 19.69 11.18 2.27 0.00 24 ER3a ExonRegion 0 5.43 14.98 21.27 24.01 17.51 17.18 9.04 16.82 9.84 12.64 3.88 4.04 18.73 12.53 14.52 17.82 10.35 26.29 17.34 15.69 7.58 4.78 17.67 25 E3_Da NovelBoundary 0 24.89 17.10 35.27 43.15 40.24 32.48 41.47 24.77 19.36 18.53 2.00 20.26 27.27 19.31 14.46 11.96 24.78 26.32 9.13 18.47 11.61 2.88 11.87 26 Ix Intron 0 10.69 10.27 13.83 14.36 44.59 40.74 24.74 14.31 9.29 4.32 2.93 7.20 6.27 10.76 13.62 9.00 10.00 15.31 22.52 9.67 6.68 6.31 16.31 27 Ix_SR1 SilentIntronRegion 0 10.90 10.48 14.09 14.63 45.49 41.55 25.22 14.60 9.48 4.40 2.99 7.35 6.40 10.98 13.89 9.19 10.17 15.60 22.94 9.86 6.81 6.44 16.64 28 Ix Intron 0 14.38 83.04 66.69 71.65 78.11 92.87 52.81 43.38 32.85 45.75 14.85 11.29 17.15 17.10 24.29 20.37 20.10 66.62 54.59 63.75 9.89 5.29 16.49 29 Ix_SR1 SilentIntronRegion 0 12.86 91.45 69.95 75.73 71.32 83.10 47.05 44.28 33.26 45.27 16.14 10.76 15.74 18.04 22.97 20.79 19.62 71.15 57.22 66.94 9.26 5.67 15.86 30 Ix_SR2 SilentIntronRegion 0 18.92 59.23 57.33 60.41 98.73 122.88 70.36 40.75 31.40 47.28 11.02 12.89 21.17 14.59 28.01 19.29 21.32 53.57 47.09 54.72 11.44 4.18 18.43 31 E4_Aa NovelBoundary 0 27.86 67.49 36.90 48.45 48.56 65.87 55.60 49.37 21.70 36.77 4.47 18.31 6.17 20.07 8.90 4.36 21.04 42.61 32.94 23.97 8.96 4.71 4.18 32 ER4a ExonRegion 0 48.26 127.61 53.31 67.03 190.95 139.00 127.85 57.46 53.12 54.93 23.51 28.04 60.86 49.89 35.77 40.10 28.08 43.39 46.82 63.83 28.09 17.23 12.67