Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC022596.6 Gene 0 7.39 29.95 25.88 88.40 67.43 325.41 23.19 7.73 97.86 12.59 1.90 5.35 2.85 38.50 24.98 1.71 3.86 38.25 18.52 40.87 12.87 4.02 23.59 2 417524 Transcript 1 10.62 30.40 19.61 51.86 64.27 234.81 39.11 16.15 77.73 31.03 11.13 29.59 5.02 41.11 12.97 1.68 18.69 48.43 38.67 72.10 12.82 16.96 26.08 3 448331 Transcript 0 5.93 16.15 23.89 63.02 55.44 168.45 21.90 9.20 42.54 18.90 1.55 5.63 0.00 18.26 42.01 0.00 1.65 16.37 6.37 45.57 1.41 6.08 2.70 4 393005 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 443444 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 445583 Transcript 0 1.47 5.21 4.07 5.82 6.30 38.14 2.68 2.66 13.24 4.82 0.71 0.29 0.48 11.97 3.78 1.52 0.93 14.90 4.42 10.57 2.46 1.45 5.33 7 456071 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 444558 Transcript 0 2.39 4.24 3.71 9.51 5.91 35.77 5.96 1.32 14.36 6.18 0.66 3.21 4.51 5.37 8.31 2.26 1.74 20.92 12.02 9.39 3.45 2.33 6.42 9 437217 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 341745 Transcript 0 9.72 32.56 13.54 12.61 21.79 20.93 22.03 11.21 12.44 17.64 2.46 3.33 1.68 2.19 1.95 1.96 6.76 12.88 7.84 12.97 2.06 7.27 5.90 11 IG33_SR2 SilentIntergenicRegion 0 0.00 5.29 1.90 2.11 8.35 22.90 6.86 2.68 7.66 1.77 0.00 5.57 0.00 8.40 0.00 0.00 0.00 2.39 1.66 8.86 0.00 9.76 4.58 12 ER1a ExonRegion 0 21.24 60.79 39.22 103.72 128.54 469.61 78.23 32.30 155.45 62.07 22.26 59.19 10.04 82.22 25.95 3.36 37.37 96.87 77.35 144.21 25.65 33.92 52.17 13 E1_Ab KnownBoundary 0 30.23 23.68 48.55 109.78 93.21 335.49 62.40 29.94 144.79 57.51 13.42 44.26 5.84 41.73 19.53 4.36 16.92 69.48 71.44 92.55 26.44 31.17 28.34 14 ER1b ExonRegion 1 15.85 29.01 53.05 93.07 58.70 444.79 49.59 24.20 157.00 53.81 10.06 38.17 5.55 78.64 18.89 1.43 34.76 101.49 58.44 113.31 36.05 23.09 74.14 15 E1_Ac KnownBoundary 0 12.52 64.92 83.94 90.73 59.42 295.57 53.97 72.58 187.53 84.13 9.90 30.46 0.00 71.11 19.90 0.00 31.98 230.44 90.26 104.38 19.52 50.46 74.86 16 ER1c ExonRegion 1 14.29 46.28 26.10 62.02 45.69 375.22 35.06 17.36 118.85 27.28 3.51 11.18 4.48 65.54 19.14 2.30 11.33 91.42 45.37 83.28 30.72 8.13 43.43 17 E1a_E2a KnownJunction 1 0.00 9.60 11.38 40.15 39.30 263.94 17.71 4.39 64.61 0.00 0.00 0.00 0.00 78.99 11.37 0.00 0.00 56.38 17.69 40.78 36.63 0.00 60.61 18 E1a_E3a NovelJunction 0 0.00 2.57 19.16 4.93 3.90 2.61 16.74 26.94 3.59 26.65 8.90 14.40 0.00 0.00 10.14 0.00 18.14 49.66 17.88 23.91 6.30 3.12 0.00 19 E1a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 I1 Intron 0 1.88 5.80 3.36 4.90 8.32 62.35 8.23 1.63 9.81 2.93 0.74 0.23 0.00 9.85 2.98 0.00 1.68 12.89 8.89 16.87 4.89 0.13 4.47 21 I1_SR1 SilentIntronRegion 0 2.54 6.66 5.00 6.57 8.43 57.31 8.91 2.50 12.13 5.77 1.45 0.45 0.00 14.23 4.28 0.00 3.30 17.97 14.45 26.92 5.33 0.26 6.24 22 I1_AR1 ActiveIntronRegion 0 1.21 4.94 1.68 3.18 8.24 67.87 7.56 0.75 7.46 0.00 0.00 0.00 0.00 5.37 1.63 0.00 0.00 7.69 3.19 6.54 4.46 0.00 2.66 23 E2_Aa NovelBoundary 0 3.48 9.08 9.28 39.16 46.94 353.60 16.91 0.00 47.83 1.67 2.26 0.00 0.00 35.38 33.01 0.00 4.02 30.05 14.02 57.46 11.00 0.00 35.68 24 ER2a ExonRegion 0 6.59 15.23 20.15 56.96 54.32 361.36 18.52 8.66 108.67 10.64 0.00 5.27 1.86 111.05 34.73 1.43 3.11 98.45 19.47 63.93 30.98 2.57 53.69 25 E2_Ab KnownBoundary 0 23.12 53.41 156.20 128.52 90.83 352.58 95.39 103.55 170.77 126.17 87.18 7.80 16.88 100.12 35.60 84.34 76.11 218.79 57.60 133.91 109.10 53.58 76.49 26 E2_Ac KnownBoundary 0 142.10 234.83 415.39 299.86 186.93 391.48 224.83 250.31 297.74 369.51 337.93 390.13 231.64 315.21 303.73 304.54 403.09 310.03 240.76 252.22 257.12 235.08 225.70 27 ER2b ExonRegion 0 0.37 4.07 28.40 66.54 40.61 326.42 12.31 1.42 111.31 3.58 0.11 4.33 0.00 83.59 35.33 0.00 0.00 81.63 6.75 55.07 42.52 3.68 32.65 28 ER2c ExonRegion 0 2.77 35.59 23.22 63.11 51.80 406.54 13.70 8.91 119.82 12.69 1.31 1.44 0.18 103.90 35.82 1.79 4.49 76.61 23.73 81.75 43.48 5.37 61.86 29 E2_Da NovelBoundary 0 3.78 8.49 11.32 20.98 20.54 76.55 21.37 20.50 27.49 25.38 0.00 0.00 0.00 7.95 26.45 0.00 8.98 63.34 26.07 78.43 10.44 5.76 20.91 30 E2a_E3a KnownJunction 0 0.00 9.41 0.00 22.71 28.10 168.77 1.90 0.00 32.32 5.43 0.00 0.00 0.00 29.37 0.00 0.00 0.00 13.22 9.60 5.56 11.00 2.94 25.95 31 E2a_E4c KnownJunction 1 7.41 51.83 17.92 47.25 31.58 366.10 14.31 15.57 109.63 18.72 0.00 0.00 0.00 105.48 4.45 3.42 0.00 88.54 16.09 50.69 23.17 5.82 53.35 32 I2_SR1 SilentIntronRegion 0 0.00 1.50 3.69 4.29 8.48 44.15 6.26 0.00 7.01 1.18 0.00 0.00 0.00 7.26 7.34 0.00 0.75 15.06 2.28 15.86 5.22 0.00 3.78 33 E3_Aa NovelBoundary 0 14.15 36.90 59.49 59.30 76.91 126.86 66.38 34.26 73.09 59.82 4.58 37.81 6.66 19.60 22.25 16.06 37.68 119.59 59.39 108.98 11.74 11.88 8.45 34 ER3a ExonRegion 0 18.57 54.14 60.39 86.36 91.10 289.46 40.33 37.95 86.88 71.02 12.79 36.64 20.87 63.96 33.64 19.15 26.71 158.03 71.68 111.34 30.65 12.65 38.86 35 E3_Ab KnownBoundary 0 31.56 79.99 69.72 120.83 120.46 350.14 57.90 46.41 96.12 84.88 17.48 30.76 35.22 48.33 19.28 45.20 33.19 183.22 117.84 127.58 29.53 10.72 51.39 36 ER3b ExonRegion 0 32.69 53.33 49.71 96.51 100.06 301.88 37.63 31.11 67.82 51.08 10.83 29.91 31.47 59.45 32.68 31.56 28.84 98.37 86.51 96.44 28.30 11.62 52.59 37 E3_Da NovelBoundary 0 28.00 17.76 83.94 73.48 67.40 147.59 48.18 32.24 76.21 68.01 9.79 12.60 0.00 18.01 29.79 12.48 8.60 114.99 34.07 76.00 17.17 9.00 22.11 38 E3a_E4c KnownJunction 0 0.00 18.42 15.46 65.26 29.88 142.25 8.30 4.15 39.61 13.05 0.00 0.00 6.82 28.55 10.01 0.00 0.00 13.22 0.00 14.25 14.39 0.00 16.90 39 I3 Intron 0 0.94 4.29 4.30 14.00 9.01 38.47 3.81 0.63 21.36 0.90 0.16 0.43 0.58 3.20 6.03 0.84 0.27 2.13 2.07 10.45 0.45 0.42 2.14 40 I3_AR2 ActiveIntronRegion 0 0.26 3.43 4.78 17.15 4.73 40.89 3.32 0.00 28.41 0.60 0.23 0.00 0.00 2.21 5.40 0.00 0.80 0.89 1.39 10.16 0.00 0.25 0.71 41 I3_SR2 SilentIntronRegion 0 0.85 9.78 8.17 32.98 23.82 94.27 7.76 0.00 46.54 0.72 0.00 0.00 0.00 4.89 8.27 0.00 0.00 4.43 4.08 24.95 1.33 0.42 6.49 42 E4_Aa NovelBoundary 0 0.00 24.07 5.74 25.94 20.54 78.65 11.26 2.34 44.85 0.00 0.00 0.00 0.00 6.83 4.57 0.00 0.00 3.90 0.00 10.67 3.09 0.00 0.00 43 ER4a ExonRegion 0 1.17 5.65 9.00 23.20 10.07 87.24 6.10 0.00 35.14 13.62 0.00 0.00 0.00 6.17 4.86 0.00 0.00 53.15 25.63 19.14 3.52 3.36 9.50 44 E4_Ab KnownBoundary 0 9.85 35.91 20.22 61.40 66.81 391.37 24.64 0.00 101.97 68.52 0.00 0.00 0.00 12.54 16.94 0.00 0.00 290.09 180.71 90.31 10.63 23.15 34.49 45 ER4b ExonRegion 0 2.88 9.97 7.62 22.92 29.68 165.09 11.11 1.41 44.00 7.07 0.19 1.29 1.02 7.97 10.05 0.67 0.78 30.15 19.19 19.63 4.48 2.12 8.96 46 E4_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER4c ExonRegion 0 10.13 55.69 47.06 139.49 82.53 605.30 30.45 11.34 221.89 18.90 1.99 2.99 1.38 141.33 54.00 2.01 6.81 112.59 47.08 108.50 58.90 5.90 75.66 48 E4a_E5b KnownJunction 0 0.00 51.90 19.72 122.46 127.16 616.12 27.69 2.30 175.40 4.41 0.00 0.00 0.00 58.98 22.00 4.36 0.00 71.38 21.46 56.50 24.53 0.00 24.41 49 E5_Aa NovelBoundary 0 3.26 2.83 17.39 10.89 8.32 8.23 6.05 24.60 21.04 21.62 2.47 18.61 0.00 2.18 0.00 0.00 0.00 13.31 0.00 13.55 5.25 8.14 4.35 50 ER5a ExonRegion 0 9.72 32.56 13.54 12.61 21.79 20.93 22.03 11.21 12.44 17.64 2.46 3.33 1.68 2.19 1.95 1.96 6.76 12.88 7.84 12.97 2.06 7.27 5.90 51 E5_Ab KnownBoundary 0 0.00 2.83 1.15 11.39 4.33 15.39 1.68 0.00 4.46 0.00 0.00 0.00 0.00 0.00 4.94 0.00 0.00 0.00 4.42 0.00 0.00 0.00 0.00 52 ER5b ExonRegion 0 7.03 80.23 44.72 176.04 132.06 652.03 38.37 8.47 227.95 7.04 0.07 1.94 2.11 121.19 39.41 1.29 0.49 82.32 34.61 80.46 45.57 1.52 67.02 53 E5_Da KnownBoundary 0 6.52 90.25 127.20 90.36 88.12 154.57 78.57 114.72 186.02 162.68 22.27 7.65 0.00 21.96 9.27 8.37 18.33 92.52 25.69 67.50 18.90 13.66 19.38 54 ER5c ExonRegion 0 12.41 88.71 32.60 128.39 128.01 660.46 34.70 2.79 160.49 6.60 0.00 0.00 0.00 113.69 45.39 0.00 0.00 50.69 23.31 69.52 39.58 0.00 50.21 55 E5b_E6a KnownJunction 0 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 56 E5b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER6a ExonRegion 0 0.00 0.00 0.05 1.03 0.00 4.02 3.94 0.00 2.30 0.05 0.00 0.00 0.00 1.36 0.00 0.00 0.00 2.42 0.00 1.10 1.21 0.00 0.00 58 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 ER7a ExonRegion 0 6.29 39.06 31.53 86.69 65.93 469.04 19.55 1.51 125.68 4.77 0.00 0.00 0.00 70.72 23.88 0.75 0.00 78.57 14.55 47.85 34.54 0.00 36.82 60 E7_Da KnownBoundary 1 56.90 129.58 223.32 176.60 160.87 580.69 183.45 358.66 449.07 380.18 168.62 30.01 0.00 80.29 22.13 85.96 158.77 481.56 207.82 295.30 151.66 144.51 108.41 61 ER7b ExonRegion 0 10.31 45.87 42.53 166.37 110.73 705.82 30.28 4.47 216.86 6.04 0.00 0.91 0.81 105.32 61.32 0.70 0.00 117.12 26.58 88.25 36.39 1.75 76.06 62 E7_Db KnownBoundary 0 0.00 0.00 0.00 4.89 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 5.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E7b_E7b KnownJunction 0 18.52 72.09 51.62 272.83 235.06 861.66 23.36 4.81 257.46 7.39 0.00 6.90 0.00 166.11 72.56 0.00 0.00 83.78 40.19 100.99 68.08 0.00 101.41 64 ER7c ExonRegion 0 3.28 2.63 1.04 2.52 3.15 13.71 5.63 2.17 4.67 2.90 1.04 3.05 5.10 3.07 4.11 2.96 2.29 5.78 3.50 2.80 2.90 0.32 5.12 65 E7_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 ER7d ExonRegion 0 7.11 64.83 47.67 234.02 115.61 917.94 43.37 5.07 255.02 4.38 1.07 0.00 1.63 85.21 58.69 0.00 0.00 104.56 20.08 74.88 24.48 2.49 70.93 67 E7_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 E7c_E8a KnownJunction 0 3.33 53.81 41.72 197.04 88.62 513.34 18.64 6.98 175.03 6.50 0.00 0.00 0.00 48.97 20.15 0.00 0.00 53.52 8.66 72.87 25.88 2.39 47.63 69 ER7e ExonRegion 0 2.72 4.43 1.08 2.82 4.50 6.36 6.14 1.79 3.27 2.03 0.96 6.58 8.44 6.89 15.95 3.83 2.94 3.83 6.94 6.23 3.93 3.30 4.65 70 E7_Dd NovelBoundary 0 14.67 12.17 2.22 0.00 3.23 8.40 9.98 0.00 2.17 1.05 2.00 5.40 5.84 4.24 0.00 10.00 0.00 3.07 0.00 0.00 0.00 0.00 3.16 71 ER8a ExonRegion 0 10.76 100.90 62.48 296.28 224.76 982.26 54.41 7.88 312.45 8.64 0.04 0.00 1.71 135.21 81.81 0.66 1.37 94.06 31.84 107.35 47.09 1.66 85.90 72 E8_Da KnownBoundary 0 73.86 252.72 427.45 433.11 594.48 1387.10 273.94 496.87 686.62 412.71 89.65 31.81 26.30 182.24 100.87 38.37 140.72 282.26 249.04 439.49 75.24 94.30 171.75 73 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 6.96 0.00 0.00 0.00 1.68 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 ER8b ExonRegion 0 9.14 55.81 67.24 278.12 148.48 817.76 42.39 10.40 321.27 13.69 0.00 0.00 0.00 99.64 32.47 0.00 0.00 43.50 15.88 83.99 37.81 2.98 57.61 75 E8_Db KnownBoundary 0 132.47 270.22 286.15 355.70 359.51 647.58 240.20 440.64 645.60 433.53 105.55 29.56 55.03 148.98 57.48 45.37 90.98 153.29 134.03 368.29 83.96 123.75 143.32 76 ER8c ExonRegion 0 14.41 59.90 61.56 232.65 162.86 738.36 44.26 14.45 208.98 15.43 0.48 1.31 2.24 54.18 53.77 0.40 0.23 25.06 13.05 52.80 10.63 2.69 27.69 77 E8_Dc KnownBoundary 1 9.63 26.90 63.07 153.16 31.32 215.50 14.62 38.24 121.82 66.59 0.00 7.65 0.00 4.59 42.40 0.00 4.58 17.78 0.00 21.16 3.09 5.27 11.01 78 ER8d ExonRegion 1 5.93 16.15 23.89 63.02 55.44 168.45 21.90 9.20 42.54 18.90 1.55 5.63 0.00 18.26 42.01 0.00 1.65 16.37 6.37 45.57 1.41 6.08 2.70 79 E8_Dd NovelBoundary 0 10.00 24.14 70.52 57.80 74.11 132.99 64.70 52.37 79.02 86.74 19.69 7.65 13.31 20.19 42.03 19.99 20.01 50.20 44.61 98.94 3.15 16.84 0.00 80 E9_Aa NovelBoundary 1 14.74 3.35 82.02 42.82 44.31 107.89 35.68 58.08 90.62 70.75 12.48 6.15 0.00 2.47 29.05 0.00 9.26 51.98 19.20 57.85 11.43 8.21 8.71 81 ER9a ExonRegion 0 8.60 5.51 26.83 15.51 28.65 53.26 14.68 13.74 32.13 30.40 7.77 3.22 5.23 26.19 37.10 13.26 10.28 75.28 32.53 65.56 3.94 10.16 5.28 82 E9_Da NovelBoundary 0 7.56 47.82 101.59 21.44 52.46 174.73 32.55 32.90 67.33 65.89 10.63 18.01 0.00 7.95 25.96 12.82 18.89 120.21 62.68 81.17 3.15 5.39 8.71 83 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84 ER10a ExonRegion 0 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.18 0.02 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.02 0.00 0.01 0.00 0.00 0.00 85 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86 ER11a ExonRegion 0 0.00 0.00 0.00 1.23 1.03 0.00 0.40 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 88 ER12a ExonRegion 0 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 89 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 90 ER13a ExonRegion 0 0.22 0.00 0.00 0.00 0.00 0.19 0.07 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00