Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PLD6 Gene 0 4.63 23.39 38.30 26.11 9.42 38.90 3.53 12.35 11.79 11.98 16.11 6.06 2.71 9.75 13.93 3.61 9.39 41.93 36.70 38.65 6.92 5.10 4.56 2 321560 Transcript 0 1.21 5.25 4.86 2.49 0.83 15.55 1.08 1.92 1.33 1.95 4.47 0.95 0.29 2.14 8.23 0.38 2.72 7.00 9.32 5.81 2.21 0.99 0.84 3 427497 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 IG44 Intergenic 0 2.72 10.84 6.64 13.04 9.43 24.02 3.40 11.05 7.70 5.01 0.95 0.39 1.76 1.66 1.43 3.90 1.26 5.25 6.01 1.98 5.43 4.95 4.74 5 IG44_SR2 SilentIntergenicRegion 0 2.97 14.85 9.04 18.25 13.11 31.27 4.49 14.81 9.61 6.13 1.04 0.41 2.49 2.03 1.94 5.50 1.27 6.59 7.06 2.71 6.90 6.61 5.44 6 ER1a ExonRegion 0 0.00 1.11 0.15 0.00 0.00 13.78 0.96 1.47 0.00 0.00 0.88 0.00 0.00 0.00 11.43 0.00 3.70 5.54 8.59 2.90 1.34 0.06 0.00 7 ER1b ExonRegion 0 0.00 3.86 2.57 0.00 0.00 26.77 2.65 1.73 0.00 2.12 11.02 0.00 0.00 1.06 25.39 0.30 6.60 10.26 22.30 6.38 2.20 3.96 0.00 8 ER1c ExonRegion 0 1.38 2.24 5.77 1.94 0.00 18.34 0.65 1.46 1.81 3.73 10.75 1.39 0.00 4.52 9.78 0.04 2.41 6.28 13.72 8.46 4.04 1.68 0.98 9 E1_Ac KnownBoundary 0 3.04 2.83 10.17 6.79 0.00 13.23 0.00 6.45 8.16 14.21 9.63 6.30 0.00 4.71 0.00 0.00 8.60 10.99 7.53 20.01 11.00 0.00 4.35 10 ER1d ExonRegion 0 1.09 9.70 37.92 17.37 5.70 40.93 2.35 6.88 13.40 13.08 27.08 6.23 1.72 16.50 28.63 4.86 15.91 59.68 41.47 65.40 10.53 4.59 6.90 11 E1_Db NovelBoundary 0 0.00 0.00 1.09 0.00 0.00 2.90 0.00 0.00 0.00 2.82 4.26 0.00 0.00 0.00 4.45 0.00 0.00 5.89 0.00 6.20 8.59 0.00 0.00 12 E1b_E2a KnownJunction 0 7.04 39.47 84.80 58.93 35.74 95.23 4.42 16.31 23.81 26.59 27.74 25.51 0.00 14.95 38.20 17.26 16.27 84.86 65.79 77.47 11.55 17.15 4.27 13 I1 Intron 0 3.84 3.61 5.94 5.06 4.70 15.00 1.66 3.81 7.60 5.83 6.25 1.91 0.97 3.89 4.00 3.62 5.33 18.02 12.45 8.02 4.88 3.58 5.62 14 I1_AR1 ActiveIntronRegion 0 1.84 1.19 4.73 1.88 2.21 10.47 0.83 3.79 6.83 3.83 6.77 0.65 0.37 5.03 3.65 3.81 5.21 18.42 13.66 7.00 2.84 4.21 4.77 15 I1_SR2 SilentIntronRegion 0 2.16 2.48 6.24 3.70 5.64 12.18 1.10 5.84 8.48 7.38 7.53 1.34 0.98 4.22 4.35 6.56 8.62 18.55 15.35 12.08 7.87 4.62 6.58 16 I1_AR2 ActiveIntronRegion 0 3.11 6.11 10.59 8.32 4.91 23.15 2.90 3.96 11.89 6.86 8.18 1.37 1.51 2.72 7.08 3.49 7.53 24.20 14.51 6.16 8.24 3.32 7.96 17 I1_AR3 ActiveIntronRegion 0 5.12 4.68 14.11 9.10 6.18 18.50 1.93 4.35 8.23 6.36 8.59 2.02 0.00 3.77 2.17 4.59 0.74 28.56 12.87 7.97 5.09 1.62 4.33 18 I1_AR4 ActiveIntronRegion 0 9.31 2.14 12.62 6.68 8.70 10.91 3.51 2.33 16.12 7.17 8.70 0.00 4.22 1.38 4.64 5.35 3.30 30.77 23.89 13.30 2.20 3.33 10.28 19 I1_AR5 ActiveIntronRegion 0 6.35 5.08 14.21 11.72 8.56 13.75 3.71 4.15 17.42 12.62 7.73 3.90 9.38 1.62 2.90 0.00 5.94 36.22 17.52 9.79 0.66 4.17 11.45 20 I1_SR3 SilentIntronRegion 0 5.87 7.54 12.25 11.83 12.34 21.71 2.73 3.46 16.45 12.62 9.91 4.47 5.90 3.93 10.39 1.25 3.51 27.60 12.64 5.83 5.05 4.03 10.80 21 I1_AR6 ActiveIntronRegion 0 2.80 4.62 6.49 7.66 6.44 19.63 1.75 2.99 6.61 7.97 4.39 5.62 0.00 4.83 3.61 2.97 1.07 14.83 8.61 2.93 4.71 2.08 6.11 22 I1_SR4 SilentIntronRegion 0 5.30 5.02 4.00 6.27 5.55 17.99 1.96 2.84 6.53 6.46 4.68 3.01 1.29 3.41 3.51 2.79 4.54 16.41 9.76 8.53 4.18 2.79 5.63 23 E2_Aa NovelBoundary 0 5.93 12.17 13.69 16.78 3.99 62.46 0.00 8.21 10.71 5.69 6.79 12.60 0.00 4.89 6.30 0.00 4.30 27.03 22.59 6.20 8.83 0.00 3.41 24 ER2a ExonRegion 0 17.05 79.96 157.49 115.31 40.32 132.95 12.07 54.52 49.04 50.16 63.14 24.28 11.04 35.63 42.09 12.90 33.33 159.59 154.09 148.24 26.19 20.74 15.06 25 E2_Da KnownBoundary 0 9.33 51.37 140.71 101.99 8.06 76.77 9.85 40.01 38.22 33.90 26.53 0.00 0.00 21.01 29.92 3.16 24.96 112.71 60.33 62.19 21.62 10.53 7.43 26 ER2b ExonRegion 0 2.26 12.38 8.67 5.55 2.50 14.52 1.64 2.83 2.19 2.11 1.77 1.48 0.86 1.91 3.47 1.11 2.06 9.18 5.64 6.06 1.27 1.22 1.55 27 IG43 Intergenic 0 70.57 167.98 141.30 141.42 242.94 319.02 139.33 158.69 146.08 171.68 47.92 43.04 37.12 95.72 33.19 87.97 52.34 227.85 105.42 143.63 50.93 129.34 111.91 28 IG43_AR3 ActiveIntergenicRegion 0 150.96 316.55 286.64 281.09 473.34 564.79 229.36 290.04 220.82 276.22 64.17 54.25 54.33 131.99 55.31 124.13 64.75 287.28 142.90 180.19 63.78 178.51 144.79 29 IG43_AR2 ActiveIntergenicRegion 0 30.75 124.06 86.45 102.63 195.83 346.70 133.76 140.94 159.56 180.34 63.50 47.49 32.72 119.73 33.97 109.82 57.51 304.10 112.87 166.37 55.18 154.71 131.52 30 IG43_SR1 SilentIntergenicRegion 0 51.35 196.71 130.27 144.80 195.85 348.44 161.41 172.53 201.35 207.06 71.67 47.39 47.37 138.42 36.00 109.42 74.24 363.99 129.89 253.48 77.90 152.17 154.08 31 IG43_AR1 ActiveIntergenicRegion 0 37.08 122.75 84.86 85.96 173.52 263.05 139.13 126.14 161.76 176.78 59.24 60.87 45.24 118.56 30.97 108.57 75.37 305.12 137.96 191.17 72.41 169.30 154.42