Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF287 Gene 0 10.01 16.93 8.68 9.43 26.76 33.07 16.28 17.40 16.58 18.97 4.17 7.48 6.24 7.23 6.70 7.49 14.42 11.20 7.88 18.63 10.88 11.03 8.14 2 395825 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 268727 Transcript 0 8.01 23.29 10.94 12.59 37.09 37.64 16.99 19.85 14.65 20.43 0.18 4.19 0.53 1.16 0.78 1.31 2.69 4.97 3.87 17.93 1.97 6.61 3.61 4 461555 Transcript 0 1.58 0.25 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.89 0.93 0.00 1.20 5.04 0.00 0.00 2.56 1.23 0.00 2.34 0.70 3.03 2.70 5 448349 Transcript 0 0.96 0.46 0.83 0.00 0.00 0.07 0.29 0.58 0.40 0.00 0.00 0.00 3.29 0.34 1.39 7.17 2.30 3.24 0.72 0.00 2.46 5.20 0.00 6 395824 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 498796 Transcript 0 0.58 0.25 0.19 0.29 2.11 0.61 0.92 2.20 0.64 0.87 0.59 0.39 0.71 0.69 1.05 0.45 1.60 1.34 0.39 0.71 0.87 0.88 0.80 8 ER1a ExonRegion 0 3.85 1.85 0.00 0.00 0.73 5.72 2.57 2.46 1.16 0.10 2.99 0.00 0.00 4.97 4.31 6.84 15.40 2.13 0.87 2.58 4.81 6.63 4.27 9 E1_Ab KnownBoundary 0 0.00 0.00 1.30 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 5.25 0.00 0.00 0.00 7.69 9.44 0.00 0.00 0.00 0.00 3.12 0.00 10 E1_Ac KnownBoundary 0 17.26 8.88 0.00 0.00 3.74 16.24 10.38 6.20 3.91 2.23 9.79 0.00 0.00 4.94 9.64 8.03 30.39 7.38 4.14 5.82 20.20 17.02 12.72 11 ER1b ExonRegion 0 10.58 6.10 0.00 0.00 2.68 13.20 6.62 5.19 3.95 1.15 9.66 0.00 0.00 13.97 11.61 11.89 33.01 8.50 3.19 4.26 13.22 14.58 8.81 12 ER1c ExonRegion 0 3.67 3.32 1.76 0.95 2.34 6.20 3.51 6.55 9.99 5.00 5.11 1.48 1.69 8.60 9.92 8.64 26.77 10.16 4.10 8.29 14.32 7.96 4.98 13 E1_Da KnownBoundary 0 0.00 0.00 4.97 0.00 0.00 0.00 0.00 2.26 1.45 3.09 0.00 0.00 0.00 0.00 15.20 3.25 7.67 16.08 4.14 2.81 2.78 8.14 4.01 14 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.46 0.00 0.00 0.00 0.00 2.97 0.00 0.00 15 E1a_E3a KnownJunction 0 0.00 5.85 0.00 3.16 0.00 0.00 0.00 7.97 17.74 9.89 2.32 6.15 0.00 8.53 23.61 20.93 11.97 9.29 16.09 16.11 8.65 5.63 7.68 16 ER1d ExonRegion 0 0.30 0.45 2.26 0.00 0.89 3.70 2.67 3.05 1.46 1.39 0.53 0.00 0.39 2.73 2.34 0.65 4.53 7.85 0.80 2.49 4.84 2.94 1.86 17 E1_Db KnownBoundary 0 6.74 2.43 1.39 0.00 3.99 0.00 0.00 1.81 0.00 3.14 0.00 0.00 6.82 0.00 0.00 0.00 8.23 10.65 0.00 6.33 7.54 0.00 3.50 18 E1b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER1e ExonRegion 0 3.15 0.50 0.00 0.00 1.91 0.00 0.00 0.00 0.00 1.78 1.85 0.00 2.39 5.14 0.00 0.00 5.12 2.45 0.00 4.69 1.39 2.93 5.39 20 E1_Dc NovelBoundary 0 3.41 0.00 0.00 1.76 0.00 0.00 0.00 8.79 2.98 1.58 0.00 0.00 6.82 0.00 4.45 3.33 20.57 7.09 4.24 5.05 18.22 5.82 11.95 21 E1c_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 22 I1 Intron 0 3.52 2.85 3.04 1.24 4.68 2.57 2.55 4.06 3.86 1.64 2.03 1.16 4.97 4.11 3.11 6.24 13.58 8.12 2.79 4.84 9.25 14.03 6.68 23 I1_SR1 SilentIntronRegion 0 3.56 2.36 4.01 0.86 4.19 2.55 1.70 3.62 3.16 1.24 2.53 0.00 4.51 4.20 4.06 8.30 15.72 9.80 4.02 4.09 12.16 9.64 6.95 24 I1_AR2 ActiveIntronRegion 0 3.98 4.08 1.63 2.10 6.53 3.40 4.38 5.83 5.87 2.35 1.72 2.95 6.04 3.73 2.47 4.54 13.16 7.17 2.13 6.63 5.38 23.15 6.91 25 E2_Aa NovelBoundary 0 20.82 5.72 8.25 2.03 19.52 15.22 10.47 8.13 4.69 3.98 4.90 13.05 6.82 17.31 5.69 12.22 8.42 2.11 17.04 31.89 8.40 48.68 21.17 26 ER2a ExonRegion 0 2.88 1.38 0.67 0.00 0.00 0.22 0.88 1.73 1.20 0.00 0.00 0.00 3.38 1.02 4.18 4.76 6.91 3.33 2.17 0.00 4.41 10.53 0.00 27 E2_Da NovelBoundary 0 3.78 2.83 0.00 1.96 12.56 18.51 4.50 2.55 2.40 0.00 2.68 6.00 0.00 9.77 0.00 24.61 4.77 7.75 0.00 11.95 2.41 11.88 3.93 28 E2a_E3a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.49 0.00 0.00 8.29 0.00 6.38 0.00 0.00 0.00 5.08 0.00 29 E3_Aa NovelBoundary 0 3.48 6.58 0.00 1.86 3.23 2.67 13.34 6.94 14.06 3.30 0.00 0.00 0.00 4.94 11.74 3.76 8.42 12.27 18.45 2.94 8.46 10.47 14.68 30 ER3a ExonRegion 0 14.72 5.99 8.10 5.23 8.18 17.39 8.84 4.86 19.11 11.54 7.64 9.43 11.15 13.44 12.48 18.76 26.94 17.00 15.72 13.07 30.33 21.48 13.08 31 E3_Da KnownBoundary 0 11.34 12.70 5.80 8.72 15.28 26.23 17.40 10.76 20.37 17.06 5.37 13.50 13.31 4.36 4.45 15.89 8.42 19.19 0.00 27.68 44.36 21.74 24.16 32 ER3b ExonRegion 0 16.49 13.55 8.89 7.81 19.22 28.89 15.93 22.35 23.86 20.67 14.20 13.96 16.34 17.33 19.29 26.10 41.45 19.66 16.24 23.26 41.71 22.63 17.73 33 E3_Db KnownBoundary 0 20.60 14.08 9.82 4.63 22.07 63.71 15.37 25.22 27.03 20.98 19.90 45.46 19.80 29.14 25.47 27.77 17.58 25.00 9.32 17.71 46.09 17.51 20.49 34 ER3c ExonRegion 0 22.79 14.17 12.40 10.77 20.12 29.64 13.90 17.54 31.43 20.62 15.51 9.26 13.81 25.44 23.36 32.94 49.01 43.35 13.94 24.94 45.91 19.36 28.06 35 E3c_E4a KnownJunction 0 35.19 51.96 22.41 23.27 59.51 61.10 32.99 33.31 51.16 34.81 14.48 0.00 27.43 28.78 30.16 57.25 73.49 65.54 27.58 35.28 57.58 32.58 59.50 36 ER4a ExonRegion 0 19.59 21.29 12.73 17.06 34.76 48.13 27.28 21.34 33.45 24.34 22.47 8.08 17.56 28.44 21.23 23.44 53.82 33.41 13.03 31.65 43.67 31.47 44.29 37 E4a_E5a KnownJunction 0 16.89 14.67 6.12 11.72 18.85 59.74 35.37 23.04 27.98 17.94 6.69 12.30 12.50 25.31 28.43 15.55 52.08 20.85 31.53 34.64 22.73 24.86 28.08 38 ER5a ExonRegion 0 16.20 6.97 11.99 13.18 18.01 22.86 19.54 22.10 25.95 26.62 15.63 5.45 12.78 22.10 23.60 20.22 46.16 22.61 16.20 32.95 28.63 21.85 23.19 39 E5a_E6b KnownJunction 0 28.30 9.08 5.74 14.08 3.57 18.40 8.92 14.75 24.91 19.39 19.90 13.95 20.29 22.13 40.92 15.55 52.64 8.66 17.41 24.48 37.62 28.66 28.00 40 ER6a ExonRegion 0 0.58 0.25 0.19 0.29 2.11 0.61 0.92 2.20 0.64 0.87 0.59 0.39 0.71 0.69 1.05 0.45 1.60 1.34 0.39 0.71 0.87 0.88 0.80 41 E6_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 4.33 0.00 1.72 5.09 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 0.00 0.00 0.00 42 ER6b ExonRegion 0 19.44 11.35 8.45 12.58 25.30 40.96 14.99 22.29 22.91 22.19 17.19 18.02 18.21 25.36 29.35 27.23 39.73 14.16 16.26 32.38 17.17 30.48 20.52 43 E6a_E7a KnownJunction 0 21.71 9.08 15.02 16.18 46.18 67.63 15.90 24.32 30.27 18.88 10.21 32.56 14.93 30.90 29.54 22.90 21.51 23.42 8.28 26.85 15.63 40.41 7.34 44 ER7a ExonRegion 0 16.12 10.26 5.14 7.09 28.85 41.38 19.79 25.01 22.09 20.39 8.40 18.42 21.88 13.62 16.89 13.85 15.84 11.85 8.18 17.75 11.05 25.63 9.87 45 E7_Da KnownBoundary 0 15.48 8.68 1.27 6.79 27.08 33.11 9.98 22.67 19.73 33.09 0.00 0.00 6.33 2.24 18.17 3.33 20.85 1.74 4.80 5.56 0.00 15.43 3.93 46 ER7b ExonRegion 0 8.40 21.97 9.54 10.59 32.42 40.66 20.15 18.49 15.92 22.64 0.69 8.22 4.05 3.09 1.32 1.49 6.41 8.23 8.50 20.63 3.41 6.47 4.19 47 E7_Db KnownBoundary 0 10.45 13.88 8.07 9.56 54.58 57.92 29.63 14.87 24.68 24.55 0.00 12.60 0.00 0.00 0.00 7.86 9.16 12.39 13.27 21.48 5.50 3.06 3.59 48 ER7c ExonRegion 0 8.01 23.29 10.94 12.59 37.09 37.64 16.99 19.85 14.65 20.43 0.18 4.19 0.53 1.16 0.78 1.31 2.69 4.97 3.87 17.93 1.97 6.61 3.61 49 IG28_SR3 SilentIntergenicRegion 0 2.61 38.96 5.08 10.55 17.04 29.84 12.54 14.47 10.05 16.39 0.10 2.29 0.21 0.50 0.16 0.32 0.53 1.67 1.53 10.47 1.06 2.57 0.00 50 IG28_AR3 ActiveIntergenicRegion 0 6.61 23.05 17.63 25.84 26.16 26.60 8.95 17.46 10.22 25.74 0.82 1.01 1.64 0.95 1.93 0.55 0.00 3.07 4.96 13.04 1.97 2.42 0.83