Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CYTSB Gene 0 21.13 31.83 13.59 12.65 25.63 4.92 28.09 18.35 18.56 24.71 9.18 13.07 22.53 10.69 8.71 14.25 6.84 3.21 3.11 25.24 18.25 20.11 13.71 2 395530 Transcript 0 3.97 12.32 4.36 2.15 6.80 1.16 8.65 4.44 4.53 6.89 0.51 1.12 2.94 1.34 1.12 3.10 1.32 1.11 1.56 7.14 4.46 3.00 3.78 3 472876 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 413167 Transcript 0 12.42 1.48 14.72 1.44 2.77 12.42 1.49 3.49 1.29 2.27 0.00 1.34 0.00 5.34 2.80 1.11 0.00 0.00 0.00 0.00 0.84 4.69 1.10 5 261503 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 395529 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 467722 Transcript 0 1.69 2.94 0.81 0.00 0.00 0.00 1.43 2.56 0.62 3.01 8.65 0.00 7.58 3.47 0.66 1.07 4.12 0.00 0.00 1.59 3.33 0.00 3.07 8 395522 Transcript 0 0.00 8.02 0.00 0.00 5.22 0.00 2.80 1.01 1.81 1.13 0.21 0.00 0.00 1.96 0.00 1.32 0.00 0.00 0.00 2.47 0.00 0.00 0.33 9 395527 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 395525 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 492188 Transcript 0 1.66 0.40 0.12 0.04 4.16 0.03 2.42 1.47 2.13 2.94 0.04 0.01 0.08 0.07 0.62 0.44 0.36 0.01 0.00 1.94 0.72 1.28 0.47 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 13 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 14 ER1b ExonRegion 0 2.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 3.05 0.00 0.00 0.00 0.00 4.63 0.00 1.65 15 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER2a ExonRegion 0 13.88 2.96 9.60 1.04 1.22 11.33 2.98 2.95 0.87 1.21 0.00 2.67 0.00 5.68 1.15 2.23 0.00 0.00 0.00 0.00 1.69 4.53 2.20 18 E2a_E4a KnownJunction 0 10.96 0.00 19.84 1.83 4.33 13.51 0.00 4.03 1.71 3.33 0.00 0.00 0.00 5.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 4.84 0.00 19 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER3b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER4a ExonRegion 0 0.88 1.14 10.29 3.78 0.80 4.51 2.51 3.66 4.48 10.88 0.00 2.47 0.31 5.34 0.78 13.09 0.00 0.00 0.00 2.25 11.15 4.60 2.13 22 E4a_E5a KnownJunction 0 0.00 2.76 10.11 7.36 4.33 5.45 1.94 8.05 12.53 16.39 0.00 6.45 6.82 7.30 0.00 19.05 0.00 0.00 0.00 3.26 11.12 9.12 12.98 23 ER5a ExonRegion 0 0.63 2.15 8.49 6.23 3.74 1.77 1.87 7.58 16.22 17.10 0.00 6.69 1.65 3.30 0.00 17.73 0.00 0.00 0.00 2.39 19.26 10.99 7.98 24 E5_Da KnownBoundary 0 3.78 5.39 5.82 6.93 3.48 6.93 8.21 10.23 27.78 13.48 0.00 6.30 0.00 2.47 0.00 4.36 0.00 0.00 0.00 3.26 13.16 11.70 0.00 25 ER5b ExonRegion 0 3.84 1.61 9.16 6.45 1.45 3.13 4.74 11.34 28.12 12.88 0.00 5.50 3.03 4.03 2.18 19.69 0.00 0.00 0.00 2.88 14.14 6.25 0.12 26 E5b_E7a KnownJunction 0 3.26 3.22 13.75 7.69 4.33 7.84 0.00 10.23 29.48 18.05 0.00 6.15 6.82 2.47 0.00 32.81 0.00 0.00 0.00 6.07 25.33 4.59 0.00 27 ER6a ExonRegion 0 0.48 0.41 0.00 0.00 0.00 0.00 2.87 0.48 0.00 0.33 2.94 0.00 0.06 1.99 1.32 2.14 4.22 0.00 0.00 0.75 3.51 0.00 1.78 28 E6_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 6.58 0.00 0.00 0.00 2.32 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 3.26 6.24 0.00 0.00 29 E6_Ac KnownBoundary 0 3.78 3.29 0.00 0.00 0.00 0.00 6.40 4.68 0.00 1.58 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 30 ER6b ExonRegion 0 2.12 15.59 1.63 0.00 7.58 0.00 16.55 1.73 0.00 4.21 14.17 0.00 4.69 11.64 5.32 5.94 15.95 0.00 0.00 6.38 13.22 3.13 13.70 31 ER6c ExonRegion 0 2.74 15.56 1.40 0.70 3.44 0.00 12.66 2.22 0.84 6.97 16.54 0.18 6.83 9.37 3.77 3.52 10.28 0.00 0.00 18.01 15.34 4.83 11.95 32 E6a_E7a KnownJunction 0 0.00 5.72 0.00 0.00 0.00 0.00 4.15 0.00 0.00 8.60 30.80 0.00 6.82 0.00 4.82 3.67 17.58 0.00 0.00 17.00 36.14 0.00 4.35 33 E6a_E8a KnownJunction 0 2.89 5.46 1.63 0.00 0.00 0.00 0.00 4.64 1.24 5.69 14.37 0.00 15.10 4.94 0.00 0.00 4.02 0.00 0.00 2.43 3.15 0.00 4.35 34 ER7a ExonRegion 0 24.79 44.52 15.41 22.08 41.51 8.19 41.76 28.42 35.85 40.84 23.12 38.80 82.72 29.91 8.53 31.71 14.76 0.56 0.00 41.17 38.43 47.37 26.21 35 E7a_E8a KnownJunction 1 34.08 32.49 22.50 28.47 43.97 9.88 59.80 27.68 41.93 41.82 24.06 26.11 106.81 21.90 5.19 34.35 21.69 0.00 0.00 47.87 45.96 48.07 30.13 36 ER8a ExonRegion 0 24.03 46.82 26.91 35.46 33.00 10.84 45.24 32.68 32.73 47.14 47.09 38.26 83.00 30.68 21.84 40.91 20.22 0.00 0.00 47.05 49.70 57.10 32.61 37 E8a_E9a KnownJunction 1 20.74 60.98 37.37 22.44 57.47 0.00 76.00 28.79 45.66 47.01 26.85 31.96 177.42 41.38 10.26 48.02 33.94 0.00 0.00 47.55 50.41 36.50 42.60 38 ER9a ExonRegion 0 24.00 50.02 17.39 22.38 47.91 1.93 39.93 27.14 33.41 46.65 28.50 45.75 82.39 26.75 20.15 27.07 15.12 0.00 0.00 39.07 55.57 45.70 28.37 39 E9a_E10a KnownJunction 0 41.79 17.69 9.76 18.28 37.52 6.76 52.95 20.04 28.07 48.11 34.59 44.11 40.42 21.13 33.99 36.74 8.32 0.00 0.00 32.41 56.46 50.76 36.11 40 ER10a ExonRegion 0 20.51 21.10 12.06 14.60 22.63 3.14 21.88 20.68 24.50 30.45 21.14 26.78 17.67 22.93 21.48 17.95 14.90 0.00 0.00 39.79 38.94 37.56 19.19 41 E10a_E11a KnownJunction 0 7.19 6.31 0.00 2.06 0.00 0.00 2.25 2.46 3.44 1.24 4.42 0.00 0.00 9.59 8.90 4.27 4.39 0.00 0.00 8.69 2.53 8.63 0.00 42 E10a_E12a KnownJunction 0 21.11 36.11 12.63 14.25 7.64 2.90 18.50 7.27 15.05 26.81 5.05 0.00 6.82 17.19 22.25 7.18 4.11 0.00 0.00 28.95 18.22 20.33 12.04 43 E10b_E11a KnownJunction 0 0.00 8.81 0.00 0.00 3.90 0.00 0.00 2.01 1.56 0.99 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 2.81 0.00 0.00 0.00 44 ER10b ExonRegion 0 0.00 7.23 0.00 0.00 6.54 0.00 5.59 0.00 2.06 1.27 0.43 0.00 0.00 1.62 0.00 2.64 0.00 0.00 0.00 2.13 0.00 0.00 0.65 45 ER11a ExonRegion 0 6.54 16.95 2.48 2.76 16.47 7.21 25.86 3.69 4.61 2.09 11.60 2.89 0.73 13.90 10.19 25.43 5.06 0.00 0.00 8.42 4.26 8.33 2.94 46 E11_Da KnownBoundary 0 17.63 17.63 4.85 4.93 19.78 12.78 31.13 4.35 4.95 4.00 17.79 6.30 0.00 7.06 10.14 34.61 9.54 0.00 0.00 5.43 10.69 11.14 0.00 47 ER11b ExonRegion 0 7.68 4.33 4.91 0.87 10.33 2.77 16.44 10.30 7.15 8.08 12.39 9.30 6.77 7.63 5.67 13.73 3.60 0.00 0.00 14.87 6.65 9.83 3.44 48 E11_Db KnownBoundary 0 13.26 8.88 5.53 0.00 11.38 7.78 23.27 6.74 10.68 6.37 11.27 6.30 6.82 12.42 4.45 8.20 4.39 0.00 0.00 19.49 8.71 5.88 0.00 49 ER11c ExonRegion 0 15.78 11.76 6.22 10.55 14.20 4.75 21.06 12.77 10.71 9.99 5.42 17.68 19.11 10.28 13.84 12.49 4.72 7.40 3.96 12.28 4.97 9.61 6.98 50 E12_Aa NovelBoundary 0 19.86 194.57 19.01 2.06 89.47 0.00 84.13 3.86 2.86 89.96 0.00 0.00 5.84 0.00 0.00 0.00 0.00 0.00 4.52 62.19 2.59 6.06 0.00 51 ER12a ExonRegion 0 15.70 23.85 10.16 12.70 25.16 2.61 26.09 15.64 23.81 30.89 9.36 3.77 13.36 11.69 11.23 10.16 8.95 0.00 0.00 37.00 29.48 28.13 19.35 52 E12a_E13a KnownJunction 0 17.93 29.07 20.58 28.00 34.89 2.90 29.41 27.19 26.53 40.96 11.85 0.00 6.82 24.43 13.85 12.05 7.95 0.00 0.00 50.69 40.65 29.39 35.25 53 ER13a ExonRegion 0 31.10 26.28 13.67 18.55 24.98 3.69 18.13 23.15 25.19 49.81 18.60 1.41 15.14 13.81 14.36 19.77 7.26 0.00 0.00 39.75 49.01 42.39 24.57 54 E13a_E14a KnownJunction 0 67.86 44.07 17.74 15.88 30.14 2.90 32.06 30.48 23.03 31.75 19.22 13.35 13.64 10.12 4.45 7.78 4.68 0.00 0.00 41.16 39.35 25.84 3.33 55 ER14a ExonRegion 0 14.56 22.42 10.98 17.27 21.60 2.08 26.11 27.95 20.30 46.28 14.10 13.94 13.96 12.22 6.58 12.21 7.81 0.00 0.00 39.85 34.88 29.55 13.04 56 E14a_E15a KnownJunction 0 44.01 33.61 11.74 21.54 32.26 2.73 29.59 35.08 31.89 57.86 26.16 0.00 6.49 19.66 9.64 18.03 9.26 0.00 0.00 56.12 41.89 44.15 15.37 57 ER15a ExonRegion 0 26.23 33.07 14.13 19.38 36.05 4.92 33.99 27.92 28.59 45.07 16.41 4.72 25.99 15.74 11.09 18.97 6.77 0.00 0.00 31.81 46.25 39.43 24.91 58 E15a_E16a KnownJunction 0 27.63 36.11 25.04 13.25 40.66 8.18 37.14 28.79 34.78 45.77 27.38 0.00 19.97 14.54 6.06 20.93 13.65 0.00 0.00 58.10 55.48 54.74 23.90 59 ER16a ExonRegion 0 21.31 42.94 20.07 21.59 27.02 1.87 24.31 23.21 26.31 40.78 17.85 2.31 16.80 21.54 9.46 9.26 6.99 0.00 0.00 36.36 32.93 39.91 27.00 60 E16a_E17a KnownJunction 0 27.41 39.47 23.24 17.08 15.79 2.78 41.12 12.28 29.51 38.20 16.90 6.30 13.64 17.36 5.69 18.88 4.39 1.95 0.00 53.12 33.30 60.87 11.18 61 E16a_E18b KnownJunction 0 0.00 10.26 0.00 0.00 0.00 0.00 2.08 0.00 1.56 4.46 0.00 0.00 6.82 2.65 0.00 0.00 0.00 0.00 0.00 0.00 5.68 3.12 4.27 62 E17_Aa NovelBoundary 0 13.93 5.26 1.63 6.43 4.07 0.00 6.76 5.18 5.93 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.62 3.15 0.00 0.00 63 ER17a ExonRegion 0 41.79 33.77 22.26 19.21 29.78 6.11 27.34 22.04 31.43 48.17 12.06 3.07 22.17 13.42 15.23 16.82 8.97 0.63 0.00 30.46 38.27 43.56 20.00 64 E17a_E18b KnownJunction 0 70.16 42.89 23.98 19.05 23.60 15.50 33.65 24.56 28.47 42.84 19.16 6.30 12.66 23.78 8.90 12.22 0.00 4.06 0.00 37.52 32.06 47.88 19.55 65 ER18a ExonRegion 0 1.66 0.40 0.12 0.04 4.16 0.03 2.42 1.47 2.13 2.94 0.04 0.01 0.08 0.07 0.62 0.44 0.36 0.01 0.00 1.94 0.72 1.28 0.47 66 E18_Ab KnownBoundary 0 2.89 0.00 1.51 0.00 10.44 0.00 13.43 0.00 1.27 3.30 0.00 0.00 0.00 0.00 0.00 0.00 3.74 0.00 0.00 3.07 0.00 0.00 0.00 67 ER18b ExonRegion 0 58.19 35.74 26.27 19.63 42.13 9.29 41.96 30.00 26.40 53.48 16.45 5.58 21.46 19.65 19.96 17.98 2.13 2.66 0.00 39.06 45.31 63.67 30.01 68 E18_Da NovelBoundary 0 0.00 22.30 0.00 1.93 4.33 0.00 5.96 3.94 11.63 12.03 0.00 5.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 8.33 0.00 69 E18a_E19a KnownJunction 0 36.45 33.48 26.11 22.94 11.38 4.88 31.05 26.82 19.85 52.65 19.58 6.00 6.17 21.66 21.88 20.42 4.77 0.00 0.00 25.06 37.87 47.82 13.06 70 I18 Intron 0 9.03 11.77 4.26 7.07 10.41 0.77 11.39 8.76 7.38 8.71 2.07 2.71 11.63 3.19 1.89 4.75 1.39 0.27 0.00 12.02 3.46 8.69 3.10 71 I18_SR2 SilentIntronRegion 0 6.97 10.43 3.81 5.96 11.19 1.36 13.88 9.42 5.27 7.04 0.27 1.26 18.09 2.20 1.57 1.72 0.80 0.00 0.00 12.69 1.25 6.40 2.03 72 I18_AR2 ActiveIntronRegion 0 3.37 9.14 3.66 3.25 12.16 0.38 14.60 9.01 5.74 8.20 1.86 3.54 15.18 3.52 0.28 5.65 0.71 0.00 0.00 8.75 1.21 4.78 2.53 73 I18_SR3 SilentIntronRegion 0 8.02 9.13 3.99 6.04 8.28 0.61 9.89 5.99 7.85 7.38 2.42 1.92 9.69 2.75 1.32 5.96 1.73 0.39 0.00 14.99 3.20 9.62 2.75 74 I18_AR3 ActiveIntronRegion 0 9.97 10.44 5.11 10.59 13.53 2.32 12.34 17.65 11.97 14.39 0.45 1.15 13.86 4.44 2.51 7.30 2.05 0.37 0.00 19.03 5.24 9.10 7.24 75 I18_AR4 ActiveIntronRegion 0 11.17 16.80 6.88 9.41 13.07 1.41 14.84 9.74 10.63 11.88 4.24 4.96 14.89 4.50 2.47 6.19 1.75 0.20 0.00 14.05 6.20 12.65 5.94 76 I18_AR5 ActiveIntronRegion 0 12.58 18.08 0.40 4.06 3.75 0.07 13.00 2.51 4.24 3.80 0.84 3.31 4.69 1.68 0.00 2.76 0.00 0.97 0.00 6.65 4.49 1.06 0.00 77 I18_AR6 ActiveIntronRegion 0 20.30 22.31 6.19 13.44 12.79 0.47 10.92 15.14 11.20 15.13 3.75 3.67 7.04 4.16 4.75 5.22 2.42 0.39 0.00 11.19 5.96 12.95 3.91 78 I18_SR5 SilentIntronRegion 0 23.71 12.24 6.33 11.00 18.10 0.00 6.75 4.04 4.75 9.51 2.23 5.14 9.06 6.06 1.67 4.99 1.85 0.00 0.00 10.10 7.25 22.57 2.09 79 E19_Aa NovelBoundary 0 17.71 15.33 6.45 12.39 16.55 2.33 10.11 13.14 5.76 8.25 2.63 6.30 0.00 2.30 4.82 4.02 12.72 0.00 0.00 14.64 13.41 14.21 4.18 80 ER19a ExonRegion 0 85.60 77.14 23.35 30.50 51.40 5.72 33.05 34.30 29.16 51.55 19.47 8.49 28.36 14.61 18.44 19.37 7.19 0.49 0.64 27.52 41.74 51.42 27.56 81 E19_Da KnownBoundary 0 0.00 37.16 0.00 3.80 20.63 8.63 13.03 0.00 1.71 3.25 0.00 13.05 15.10 2.12 0.00 4.02 0.00 0.00 0.00 12.91 12.11 2.76 0.00 82 E19_Db KnownBoundary 0 14.45 2.63 4.79 2.06 35.40 2.78 4.50 9.49 22.34 7.31 0.00 7.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.37 8.59 6.00 0.00 83 ER19b ExonRegion 0 8.47 7.65 3.21 2.73 27.52 7.34 9.77 6.34 16.53 7.54 0.00 12.16 7.15 1.62 0.00 0.00 0.00 0.00 0.00 6.89 13.96 4.66 0.00 84 ER19c ExonRegion 0 15.87 39.04 17.44 8.60 27.18 4.63 32.52 17.75 16.57 23.12 2.06 4.48 4.94 2.72 4.50 8.37 5.28 4.46 6.24 28.57 10.67 8.90 10.84