Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NLK Gene 0 55.51 86.67 77.85 66.92 121.02 370.23 67.10 131.39 146.23 100.20 78.80 95.78 93.81 108.32 66.86 89.29 61.94 59.50 42.55 80.76 40.14 61.20 26.76 2 262393 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 407008 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 496808 Transcript 0 2.82 0.00 6.59 4.49 11.97 4.94 4.02 13.55 16.06 13.24 4.74 0.00 0.00 4.59 0.00 3.76 7.85 0.00 0.00 2.68 2.29 0.00 4.01 5 IG3_AR2 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 6.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.01 0.00 2.97 0.00 0.00 0.00 0.00 2.15 2.96 0.00 6 IG3_AR3 ActiveIntergenicRegion 0 0.43 1.66 7.45 2.49 4.90 21.33 3.24 15.76 21.02 21.27 15.77 5.25 3.94 40.69 11.63 23.03 14.81 14.04 9.10 18.23 17.52 7.23 4.79 7 ER1a ExonRegion 0 36.93 106.41 40.78 33.99 44.28 158.55 36.49 86.01 105.56 80.50 90.54 64.09 81.83 120.61 57.25 108.93 80.55 54.47 43.71 81.83 51.31 48.60 31.81 8 E1_Ab KnownBoundary 0 19.63 72.82 35.48 24.24 36.76 150.48 36.08 69.87 70.51 67.02 73.18 66.47 105.19 132.44 59.95 109.97 66.20 76.98 25.79 91.59 57.33 31.54 28.60 9 ER1b ExonRegion 0 23.70 43.60 26.04 19.42 32.96 170.28 34.64 53.54 78.70 47.24 76.44 50.76 91.88 124.32 52.24 80.75 56.99 61.12 42.06 62.82 55.22 41.33 24.57 10 E1a_E2a KnownJunction 0 35.86 50.06 28.50 34.46 68.93 347.98 53.04 98.54 162.12 72.50 128.30 70.22 136.68 149.63 54.89 146.20 94.72 102.68 98.54 97.67 77.90 53.33 22.37 11 I1_AR2 ActiveIntronRegion 0 0.39 2.08 1.49 1.59 3.41 1.35 6.31 5.30 5.56 3.92 2.14 6.26 19.07 1.45 2.44 6.36 3.33 1.40 2.07 8.99 1.25 0.00 1.64 12 I1_AR3 ActiveIntronRegion 0 12.02 11.39 21.57 8.27 19.59 30.20 22.96 25.79 17.55 12.19 13.71 35.66 29.67 13.89 15.50 17.78 8.04 3.82 6.03 10.13 2.01 7.46 4.03 13 I1_AR8 ActiveIntronRegion 0 7.12 14.94 7.82 12.13 14.15 11.00 19.81 11.20 7.89 8.98 0.00 0.33 9.29 0.00 0.28 3.32 3.49 0.00 0.00 9.00 0.00 0.00 2.32 14 E2_Aa NovelBoundary 0 0.00 9.08 4.58 10.02 0.00 17.15 12.59 6.24 2.86 2.58 0.00 0.00 20.78 9.71 6.30 0.00 0.00 2.07 0.00 3.26 2.97 0.00 13.06 15 ER2a ExonRegion 0 34.81 52.06 50.34 56.77 96.33 361.86 64.88 109.88 170.49 94.45 116.33 87.95 165.49 156.60 70.75 109.81 95.17 120.56 59.08 112.75 61.45 68.37 31.11 16 E2a_E3a KnownJunction 0 76.83 62.36 62.89 70.75 128.86 500.28 111.38 142.36 230.09 123.91 140.67 129.94 190.57 157.28 75.16 131.59 124.26 89.12 137.32 132.50 39.23 125.65 36.88 17 I2_SR4 SilentIntronRegion 0 12.90 28.81 7.83 10.38 15.77 19.53 14.19 12.36 11.06 6.89 0.09 3.92 6.78 0.99 4.41 3.80 1.70 5.20 2.76 10.90 0.59 2.83 1.95 18 I2_AR4 ActiveIntronRegion 0 11.65 10.02 7.63 4.02 16.89 17.29 10.21 6.37 6.35 8.68 0.10 2.50 1.76 0.97 0.31 1.80 0.50 2.67 2.29 4.76 0.33 4.92 0.88 19 I2_SR5 SilentIntronRegion 0 15.26 23.02 15.32 14.48 16.38 14.31 12.77 14.26 13.74 9.47 0.65 3.89 8.47 0.43 7.39 4.24 4.15 5.71 6.95 10.71 1.85 4.89 3.45 20 E3_Aa NovelBoundary 0 36.23 34.07 18.63 15.72 15.62 16.41 31.27 11.25 11.72 13.81 0.00 12.30 0.00 0.00 8.90 4.36 4.49 8.46 0.00 17.51 2.59 8.94 8.45 21 ER3a ExonRegion 0 41.05 76.48 56.94 70.16 106.55 416.47 82.98 131.49 220.67 122.21 100.55 127.33 129.14 154.87 85.59 118.09 93.19 59.59 68.71 126.41 42.15 87.55 25.54 22 E3_Da NovelBoundary 0 40.38 18.68 29.42 11.55 50.59 11.58 18.72 15.69 9.98 12.20 2.37 12.00 13.31 7.59 20.27 15.89 3.83 9.82 8.66 16.87 0.00 2.33 8.02 23 E3a_E4a KnownJunction 0 40.30 92.42 52.54 72.05 156.11 375.75 87.13 118.13 206.80 103.15 127.08 140.90 108.60 129.08 71.33 91.09 59.00 58.57 60.52 118.12 38.05 65.58 18.95 24 I3_SR2 SilentIntronRegion 0 18.11 23.89 8.43 13.43 15.76 12.52 18.93 8.74 7.30 7.37 1.45 7.22 15.77 1.61 3.82 8.22 7.78 4.35 2.07 12.82 2.93 4.60 5.96 25 I3_AR1 ActiveIntronRegion 0 24.67 10.84 16.31 13.14 28.85 17.44 16.94 13.48 9.62 9.42 1.13 8.14 11.14 2.56 7.00 8.61 6.86 6.12 6.21 9.77 0.43 2.64 4.85 26 I3_SR3 SilentIntronRegion 0 11.61 10.79 4.75 13.49 14.00 7.15 13.38 7.25 5.05 4.38 1.05 7.39 10.41 2.49 5.61 6.22 4.41 3.75 1.61 6.91 1.19 1.96 4.77 27 I3_AR3 ActiveIntronRegion 1 15.55 8.34 4.51 11.70 19.25 7.05 11.92 5.49 5.08 7.23 0.00 5.27 19.35 2.06 7.52 5.85 0.79 1.66 3.34 6.86 0.67 1.36 2.59 28 I3_AR14 ActiveIntronRegion 0 25.43 6.68 8.12 9.68 12.93 12.89 14.06 14.85 8.47 4.39 2.65 8.20 13.52 1.93 8.73 14.85 6.54 6.82 7.31 8.13 2.20 2.10 4.55 29 I3_SR8 SilentIntronRegion 1 3.95 5.42 4.66 2.54 16.41 11.13 13.95 0.69 3.21 0.00 1.93 0.00 26.58 1.62 6.96 2.97 0.66 1.48 0.00 3.55 0.00 0.00 0.00 30 ER4a ExonRegion 0 43.00 71.69 63.94 63.38 130.24 464.67 79.77 123.09 192.08 105.56 113.81 136.36 133.69 133.62 74.86 79.86 85.39 64.19 26.26 114.30 39.85 62.10 32.58 31 E4a_E5a KnownJunction 0 30.89 86.63 83.29 79.34 149.83 679.27 101.53 136.16 216.26 128.35 131.72 196.26 205.34 113.49 64.65 100.14 77.42 67.69 66.07 116.27 26.13 60.38 39.10 32 ER5a ExonRegion 0 56.75 91.46 57.22 70.41 132.08 481.59 86.70 147.64 219.45 112.80 110.20 156.57 178.93 151.93 77.59 113.77 79.45 85.60 49.85 122.88 50.28 66.91 36.37 33 E5a_E6a KnownJunction 1 64.01 70.32 56.21 77.01 116.81 481.60 102.77 168.81 215.25 115.80 92.29 237.38 147.39 157.99 113.11 93.82 69.19 78.76 35.67 111.92 42.50 63.93 51.39 34 ER6a ExonRegion 0 53.58 94.05 63.87 70.32 129.42 550.37 82.92 158.50 202.44 113.24 120.20 154.07 139.63 157.62 70.89 130.52 86.55 129.98 64.12 112.85 63.94 65.62 45.38 35 E6a_E7a KnownJunction 0 93.65 111.56 87.40 73.85 105.18 450.76 61.52 189.27 221.73 118.17 150.51 196.26 155.83 142.09 85.54 256.09 96.21 200.26 116.33 173.02 67.96 68.34 64.88 36 ER7a ExonRegion 0 44.61 74.60 71.91 62.16 96.01 399.08 64.13 164.36 216.99 117.70 114.21 117.91 88.60 143.42 92.38 186.08 106.08 145.43 65.46 122.07 82.79 71.00 44.31 37 E7a_E8a KnownJunction 1 40.97 75.71 60.64 52.71 138.88 458.37 75.87 168.81 186.89 134.39 106.03 120.04 34.41 89.76 59.71 105.10 108.74 104.13 43.86 110.90 83.34 54.80 33.80 38 E7a_E9a NovelJunction 0 0.00 6.05 0.00 3.06 3.99 45.20 8.61 16.27 8.45 3.22 7.21 31.51 0.00 2.88 15.20 22.47 9.54 4.15 8.75 5.82 5.81 5.02 8.54 39 ER8a ExonRegion 0 49.80 93.12 96.02 61.99 125.64 413.53 74.63 135.04 174.18 110.08 97.29 89.77 66.09 134.97 67.60 124.08 89.96 150.62 48.77 108.85 63.43 63.03 34.46 40 E8a_E9a KnownJunction 0 110.83 152.87 138.35 90.43 192.19 707.32 70.13 158.71 237.90 151.37 106.92 90.33 102.92 147.51 102.11 268.90 98.36 211.79 96.00 176.54 107.00 94.24 50.79 41 E9_Aa NovelBoundary 0 9.93 8.95 9.31 1.90 19.61 2.21 5.83 8.54 10.50 1.67 2.42 13.65 20.13 2.47 5.56 3.59 3.74 6.38 0.00 13.10 0.00 13.59 11.95 42 ER9a ExonRegion 0 70.64 93.21 96.48 80.27 117.24 487.73 81.14 138.18 200.00 117.80 116.99 98.77 80.20 157.86 98.69 148.96 94.22 115.20 49.81 124.56 65.59 62.30 38.50 43 E9a_E10a KnownJunction 0 101.57 61.37 80.30 82.01 157.89 498.75 106.79 167.38 195.11 108.47 116.92 111.34 94.64 209.49 87.89 128.86 60.87 89.91 25.22 106.36 67.52 67.17 50.02 44 I9_AR1 ActiveIntronRegion 0 0.00 7.46 2.45 5.45 0.45 16.50 2.65 0.58 4.94 3.06 3.87 4.33 18.76 1.62 0.48 2.97 0.00 5.85 6.37 3.55 2.20 0.00 2.94 45 ER10a ExonRegion 0 78.69 73.86 90.31 91.10 141.39 477.47 91.44 171.41 203.08 118.68 116.22 119.98 83.32 164.04 94.23 122.68 83.68 87.65 63.71 114.17 47.64 85.29 40.93 46 E10a_E11a KnownJunction 0 80.24 153.59 88.58 105.61 139.39 496.48 56.31 156.99 215.77 128.13 95.50 76.37 88.31 190.42 102.36 124.07 91.72 74.78 43.20 79.58 63.32 84.93 31.67 47 ER11a ExonRegion 0 51.21 106.75 98.99 85.51 141.52 454.81 79.81 173.72 212.00 121.59 86.04 103.46 87.74 141.61 71.85 81.86 70.64 64.42 32.86 94.69 43.31 77.98 34.43 48 E11_Da KnownBoundary 1 49.71 127.02 90.51 89.47 220.80 581.09 118.36 208.12 200.61 165.66 56.96 180.66 125.64 117.43 60.94 78.87 41.42 61.52 40.00 93.64 17.54 89.58 51.56 49 E11a_E11b KnownJunction 0 2.82 0.00 6.59 4.49 11.97 4.94 4.02 13.55 16.06 13.24 4.74 0.00 0.00 4.59 0.00 3.76 7.85 0.00 0.00 2.68 2.29 0.00 4.01 50 ER11b ExonRegion 0 74.88 89.22 109.38 91.81 187.13 482.01 86.04 163.55 145.96 116.29 52.14 108.11 89.21 73.92 67.64 59.35 35.80 29.71 37.01 59.70 19.92 68.67 17.79 51 E11_Ab KnownBoundary 1 277.38 184.18 323.32 217.29 239.05 663.20 85.37 278.24 273.61 158.57 48.54 117.49 72.56 68.40 105.82 113.82 21.13 41.41 66.92 63.28 21.37 143.53 32.18 52 ER11c ExonRegion 0 53.81 61.51 100.48 71.70 98.37 230.80 41.29 125.59 108.65 72.13 35.77 72.45 59.03 30.10 44.35 32.54 22.18 16.27 19.05 54.60 11.43 43.91 9.53 53 ER11d ExonRegion 0 4.66 6.91 0.00 4.63 17.12 24.94 8.47 4.49 3.95 4.36 3.48 6.06 3.75 3.57 5.80 5.35 1.32 0.00 0.00 6.81 0.00 0.00 0.00