Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC43A2 Gene 0 33.03 32.55 88.32 55.57 51.59 105.38 14.93 81.19 89.27 95.01 9.34 9.03 10.85 80.73 37.19 73.44 75.22 76.54 37.63 50.36 23.57 8.86 14.64 2 301335 Transcript 0 5.54 10.23 4.31 4.29 7.50 7.45 3.17 2.97 3.60 4.41 1.51 0.00 0.00 7.11 6.12 6.53 5.05 1.99 5.02 4.36 1.64 1.82 1.97 3 412517 Transcript 0 6.63 2.28 6.15 4.81 7.38 9.44 3.25 1.37 6.90 5.58 0.96 0.46 0.00 4.33 2.37 6.11 5.48 5.91 4.68 5.11 1.78 0.84 2.96 4 382147 Transcript 0 1.96 30.55 101.98 70.28 47.93 141.34 10.35 81.56 97.87 102.28 0.00 0.00 0.00 0.00 0.48 0.00 0.09 84.31 50.87 49.82 0.00 0.00 0.00 5 ER1a ExonRegion 0 6.52 3.75 2.38 2.97 3.62 5.21 2.57 0.00 1.02 4.48 2.05 0.00 0.00 9.04 1.82 13.05 8.54 3.41 5.37 5.92 0.04 0.00 1.09 6 E1_Ab KnownBoundary 0 25.34 9.80 8.96 5.86 15.53 5.05 4.50 0.00 7.87 12.41 8.00 0.00 0.00 26.31 4.45 12.30 13.65 8.87 17.98 9.40 0.00 0.00 4.18 7 ER1b ExonRegion 0 23.89 10.22 10.07 3.99 25.48 24.01 6.53 4.03 5.97 15.73 5.48 0.00 0.00 35.31 13.47 36.09 21.61 19.84 10.77 15.45 14.74 2.68 6.22 8 E1a_E2a KnownJunction 0 39.27 21.84 16.82 2.76 52.38 85.06 20.67 8.75 11.40 20.12 4.74 0.00 0.00 31.26 8.90 81.86 63.67 32.25 21.46 26.72 27.99 9.37 8.71 9 I1_AR1 ActiveIntronRegion 1 4.27 2.93 5.69 0.72 5.42 28.19 1.65 10.87 12.87 9.15 0.00 0.00 0.69 6.10 3.29 5.72 21.65 14.94 8.87 12.02 1.42 0.00 1.71 10 ER2a ExonRegion 0 12.42 15.89 38.90 17.37 21.76 74.71 8.28 33.99 37.90 47.79 5.40 5.80 1.05 40.19 18.58 38.96 56.72 34.51 24.18 31.80 16.45 4.26 7.76 11 E2a_E3a KnownJunction 0 30.08 36.70 70.55 38.96 21.22 111.92 12.23 52.49 75.46 79.30 6.48 11.70 6.82 63.16 36.47 59.13 31.98 66.28 44.33 46.21 23.04 5.14 10.07 12 E2a_E4a NovelJunction 0 0.00 0.00 4.73 16.05 0.00 13.40 4.42 4.31 0.00 11.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.76 18.45 0.00 0.00 0.00 0.00 13 I2_SR1 SilentIntronRegion 0 10.65 3.12 4.92 6.17 6.98 13.20 3.64 9.70 7.91 4.46 0.69 0.00 0.55 0.57 1.38 7.01 6.69 4.86 3.54 6.11 1.50 1.93 6.59 14 I2_AR5 ActiveIntronRegion 0 10.75 2.93 7.11 5.36 5.87 6.85 3.89 9.68 5.98 6.45 0.00 1.72 1.09 0.54 3.16 6.06 7.43 7.00 2.47 5.72 1.09 0.73 11.73 15 I2_AR11 ActiveIntronRegion 0 12.75 4.59 17.78 5.28 6.25 9.57 1.89 10.47 9.88 6.27 0.00 0.00 1.47 0.00 2.63 9.02 3.11 5.20 4.26 6.16 0.00 3.71 9.39 16 I2_AR12 ActiveIntronRegion 0 9.15 0.71 17.86 4.80 3.21 12.93 0.03 6.27 10.10 6.68 0.00 2.38 0.00 0.00 7.69 4.38 0.00 4.16 2.07 4.26 0.00 0.00 8.88 17 ER3a ExonRegion 0 23.77 37.53 81.72 47.45 40.23 78.92 16.84 85.53 90.09 93.99 12.43 8.35 3.04 83.12 33.17 65.02 77.09 90.44 39.79 61.29 24.68 12.26 12.62 18 E3_Da NovelBoundary 0 32.45 3.35 6.80 9.76 4.33 2.84 1.72 4.11 13.92 10.07 0.00 6.30 0.00 0.00 0.00 7.86 0.00 16.66 0.00 3.26 0.00 0.00 6.40 19 E3a_E4a KnownJunction 0 32.45 66.50 94.38 83.41 67.49 86.54 20.67 106.26 114.03 121.77 9.58 12.60 13.47 110.19 66.38 80.58 125.85 131.70 37.55 60.59 25.39 17.21 16.48 20 I3 Intron 0 15.89 6.26 3.87 3.91 11.33 16.59 7.13 11.90 6.38 8.88 0.00 0.00 0.00 0.77 1.58 3.43 2.54 9.73 1.84 4.91 3.38 0.00 5.09 21 I3_AR1 ActiveIntronRegion 0 20.68 7.08 4.71 3.97 12.36 19.57 9.14 11.83 6.27 9.95 0.00 0.00 0.00 0.85 1.63 3.47 2.10 10.50 2.02 4.82 3.25 0.00 3.64 22 E4_Aa NovelBoundary 0 9.19 0.00 3.67 6.43 19.10 8.18 0.00 6.04 10.91 5.88 0.00 0.00 0.00 0.00 9.77 11.02 13.37 12.48 0.00 0.00 0.00 2.88 10.67 23 ER4a ExonRegion 0 20.83 41.43 112.91 77.42 72.68 123.88 21.11 102.01 118.57 138.43 12.67 22.42 10.39 119.20 53.26 100.68 91.19 145.74 36.40 75.00 31.21 14.58 24.07 24 E4a_E5a KnownJunction 0 21.11 29.01 141.12 100.12 62.56 147.07 33.25 115.25 138.19 151.02 19.69 23.11 13.64 96.24 45.37 128.26 88.83 103.18 35.86 86.61 47.45 14.70 41.32 25 ER5a ExonRegion 0 31.97 40.78 144.26 118.43 97.47 184.40 29.61 134.08 149.56 168.62 21.84 9.90 4.81 121.26 46.87 135.48 120.72 120.70 70.08 85.71 40.58 13.94 19.98 26 E5_Da NovelBoundary 0 0.00 0.00 6.09 0.00 0.00 0.00 2.25 4.60 1.68 2.95 0.00 0.00 0.00 0.00 0.00 3.33 0.00 1.91 0.00 0.00 0.00 0.00 20.32 27 E5a_E6a KnownJunction 0 18.97 67.49 128.85 128.12 108.06 218.62 24.51 142.53 149.97 160.61 16.85 0.00 12.34 130.97 49.08 108.09 95.93 119.51 79.34 92.74 39.72 13.47 26.55 28 I5_SR3 SilentIntronRegion 0 5.55 1.02 1.00 1.05 5.03 1.31 0.00 2.04 0.19 4.08 0.00 0.00 2.35 0.00 1.45 7.07 0.00 2.21 3.38 0.00 1.64 0.00 11.48 29 I5_AR1 ActiveIntronRegion 0 12.85 5.76 8.82 7.23 28.39 28.25 5.84 9.76 7.79 4.36 0.00 1.47 1.97 1.86 5.00 5.50 6.70 5.93 4.20 9.65 2.45 2.30 8.25 30 I5_SR4 SilentIntronRegion 0 17.35 6.48 11.64 7.58 16.81 14.70 4.34 11.26 8.72 8.25 0.00 2.74 0.35 1.20 2.55 7.31 4.21 8.20 2.90 7.94 2.21 2.28 4.28 31 E6_Aa NovelBoundary 0 17.04 5.99 9.31 2.06 0.00 18.80 0.00 11.87 13.54 8.65 0.00 6.30 0.00 3.00 9.64 11.45 16.08 4.64 9.60 16.43 2.53 0.00 0.00 32 ER6a ExonRegion 0 30.63 54.43 142.53 114.60 67.58 146.51 19.36 127.74 131.77 158.45 11.02 25.98 16.04 136.27 46.73 129.37 110.53 108.34 48.64 77.19 38.58 15.28 22.29 33 E6_Da NovelBoundary 0 2.89 2.89 0.00 1.96 4.24 11.24 4.06 10.31 6.25 5.75 0.00 0.00 0.00 0.00 0.00 8.37 4.11 23.05 13.18 8.95 6.30 0.00 0.00 34 E6a_E7a KnownJunction 0 41.56 62.69 134.06 92.66 82.17 168.88 22.30 83.91 137.93 173.39 19.06 18.16 19.64 144.92 68.24 114.84 91.54 78.89 60.52 92.04 32.00 11.57 43.88 35 ER7a ExonRegion 0 25.75 51.02 123.64 86.67 66.85 161.95 21.52 102.37 123.01 133.35 17.84 20.77 10.50 109.69 44.51 94.49 103.98 103.18 43.74 73.21 40.29 10.23 25.42 36 E7a_E8a KnownJunction 0 63.94 63.74 134.89 72.52 69.44 139.92 29.06 105.23 127.08 133.69 15.42 36.16 32.79 113.66 40.05 142.44 114.45 120.46 50.54 69.93 23.85 9.12 27.40 37 ER8a ExonRegion 0 35.77 32.42 111.22 65.02 65.93 148.74 18.85 102.69 114.97 122.33 18.23 18.66 16.73 120.36 48.31 98.58 109.25 131.66 46.31 71.19 28.83 8.56 16.27 38 E8a_E9a KnownJunction 0 38.53 57.56 120.43 80.04 47.28 161.84 25.66 125.15 135.04 140.97 11.48 12.00 12.82 103.95 22.37 126.12 109.21 111.92 71.72 75.04 36.88 5.57 11.87 39 ER9a ExonRegion 0 37.48 41.52 123.77 84.90 55.06 146.67 22.78 117.39 132.61 145.31 10.45 11.49 20.48 118.05 54.89 116.68 106.01 138.27 59.20 81.82 39.98 12.56 18.42 40 E9_Da NovelBoundary 0 0.00 6.05 13.81 13.72 3.48 5.51 2.16 6.98 10.45 18.56 0.00 0.00 14.61 0.00 0.00 8.72 3.93 12.10 0.00 3.26 0.00 0.00 10.93 41 E9a_E10a KnownJunction 0 0.00 33.42 96.74 57.67 34.47 125.95 11.92 66.42 103.96 84.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.43 43.58 50.49 0.00 0.00 0.00 42 E9a_E11a KnownJunction 0 35.04 3.09 22.35 16.55 25.38 7.27 11.48 26.62 8.91 14.42 5.05 18.91 20.13 131.67 65.15 153.55 98.46 9.49 13.65 5.31 37.00 21.92 13.83 43 E10a_E11a KnownJunction 0 3.78 21.97 82.37 64.69 58.49 127.82 6.76 69.37 66.35 89.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78.10 52.24 37.97 0.00 0.00 0.00 44 ER10a ExonRegion 0 2.12 36.27 126.83 88.47 50.84 170.24 12.36 108.89 123.31 133.33 0.00 0.00 0.00 0.00 1.45 0.00 0.28 104.40 56.81 60.99 0.00 0.00 0.00 45 ER11a ExonRegion 0 28.00 27.77 117.71 82.50 61.77 149.86 17.81 115.68 126.91 140.99 10.00 12.27 32.16 116.62 46.52 118.05 113.01 106.31 73.45 73.58 39.97 12.29 24.27 46 E11_Da KnownBoundary 0 9.26 3.35 12.45 12.55 7.56 12.72 4.50 2.42 17.36 2.87 2.68 6.30 0.00 6.95 0.00 3.50 8.88 14.38 14.40 6.52 0.00 0.00 0.00 47 E11a_E12a KnownJunction 0 53.94 20.59 169.86 129.62 91.94 184.33 9.89 179.78 198.20 182.10 2.68 30.61 26.62 157.99 51.05 174.57 175.97 139.53 105.60 96.20 22.61 25.41 45.07 48 ER11b ExonRegion 0 6.63 2.28 6.15 4.81 7.38 9.44 3.25 1.37 6.90 5.58 0.96 0.46 0.00 4.33 2.37 6.11 5.48 5.91 4.68 5.11 1.78 0.84 2.96 49 E11_Db NovelBoundary 1 123.50 84.66 77.64 124.76 104.58 55.82 134.96 49.70 79.43 64.95 29.64 59.72 88.96 81.52 61.07 60.41 150.54 95.63 57.32 148.54 56.65 51.93 36.45 50 I11 Intron 0 6.90 3.89 6.23 6.51 21.18 19.54 5.14 6.93 8.47 8.66 0.70 2.78 0.80 2.68 3.01 6.46 6.49 6.13 3.46 5.17 1.37 0.54 1.67 51 I11_AR2 ActiveIntronRegion 0 9.83 4.53 9.72 9.04 26.93 29.99 7.04 10.97 11.40 12.40 1.31 4.21 0.75 2.59 2.26 8.63 9.58 9.15 4.01 4.94 2.35 1.01 2.56 52 ER12a ExonRegion 0 80.62 42.49 169.69 111.88 81.10 165.55 21.51 170.56 191.11 199.94 16.12 17.55 18.55 142.06 66.55 159.91 168.10 167.16 92.40 75.83 40.28 17.72 28.90 53 E12a_E13a KnownJunction 0 68.38 78.28 159.90 104.08 96.10 167.06 24.25 142.49 156.65 187.50 20.22 6.30 18.99 123.14 33.50 109.71 121.74 148.82 76.80 95.17 43.61 23.21 7.17 54 ER13a ExonRegion 0 73.25 65.54 136.18 94.32 106.09 252.64 35.82 146.47 175.50 198.26 13.35 18.37 28.84 154.05 55.36 127.88 150.64 163.65 88.07 86.37 47.95 18.27 25.52 55 E13a_E14a KnownJunction 0 126.69 88.73 185.00 130.79 160.36 293.86 56.09 179.12 211.46 219.65 9.16 20.26 33.44 116.31 67.62 113.47 119.87 185.92 99.96 67.11 38.12 12.80 33.38 56 ER14a ExonRegion 0 53.48 40.47 144.37 86.81 102.91 169.63 16.81 127.47 138.32 160.46 11.85 13.41 24.13 113.77 57.00 119.22 102.75 129.01 62.73 63.59 36.34 14.11 29.20 57 E14a_E15a KnownJunction 0 83.05 60.78 139.03 149.63 105.35 183.98 9.19 194.53 135.59 178.26 17.43 12.90 36.36 186.77 64.40 113.39 108.46 172.94 86.78 93.96 45.28 20.27 34.06 58 ER15a ExonRegion 0 37.06 33.94 82.04 47.14 49.49 91.03 13.12 73.21 77.46 76.48 7.27 5.45 9.64 70.18 37.32 59.17 60.83 53.52 27.31 42.07 18.08 7.60 12.11 59 E15_Da KnownBoundary 0 11.34 56.77 21.29 18.61 38.46 34.30 9.85 24.07 29.66 19.34 2.21 0.00 0.00 11.89 19.66 0.00 4.30 4.73 16.47 11.51 6.24 6.25 7.77 60 ER15b ExonRegion 0 4.56 16.71 6.24 5.62 11.37 9.68 3.77 5.94 6.18 4.34 0.97 0.00 0.00 5.18 10.43 0.00 1.55 0.58 4.68 2.79 3.24 3.65 2.84 61 IG24_SR4 SilentIntergenicRegion 0 14.00 14.18 14.36 13.82 24.27 16.75 7.83 18.73 23.52 16.19 0.88 0.82 0.00 11.56 3.28 7.48 15.10 4.20 6.49 10.66 2.02 5.00 2.01 62 IG24_AR2 ActiveIntergenicRegion 0 2.07 2.05 9.34 6.50 5.35 7.86 1.64 8.17 14.29 5.41 0.23 0.14 0.15 3.96 2.59 3.14 3.73 4.58 2.93 3.50 1.15 0.90 1.53 63 IG24_SR2 SilentIntergenicRegion 0 4.85 1.48 8.58 7.61 10.03 7.80 2.74 8.37 17.71 6.55 0.18 0.33 0.00 5.91 1.63 5.44 5.18 4.52 3.27 3.75 0.62 1.39 1.65 64 IG24_AR1 ActiveIntergenicRegion 0 15.37 3.14 15.78 19.20 17.97 7.65 3.48 25.25 25.56 8.38 1.75 0.00 0.00 5.95 3.65 3.24 5.69 5.91 3.18 3.48 2.20 1.89 1.09