Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SENP3 Gene 0 115.20 153.81 242.39 162.42 148.29 174.77 125.71 135.02 106.88 229.43 257.09 118.58 71.90 365.49 366.67 255.34 264.33 218.33 96.80 168.36 153.77 136.91 125.57 2 321337 Transcript 0 162.73 161.68 229.87 156.01 142.82 177.62 148.69 128.35 98.04 209.23 255.57 110.00 68.60 363.43 330.07 219.43 270.03 181.46 88.81 177.90 157.43 126.66 106.32 3 429205 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 ER1a ExonRegion 0 6.17 11.08 29.04 5.87 8.46 26.09 10.94 26.07 14.09 58.61 72.31 23.18 17.72 97.73 83.44 58.09 85.33 49.56 26.15 33.11 51.25 25.89 34.20 5 E1a_E2a KnownJunction 0 0.00 17.76 67.77 31.30 3.65 43.50 23.32 67.98 44.10 118.35 64.65 34.81 52.59 289.66 212.13 166.28 132.68 167.93 66.54 69.73 96.56 85.97 75.20 6 ER2a ExonRegion 0 2.29 25.93 53.51 26.69 11.37 43.55 16.99 53.15 37.47 111.44 99.54 20.93 47.68 288.69 196.32 156.28 155.14 139.20 50.97 65.96 89.07 78.83 75.86 7 ER2b ExonRegion 0 26.23 64.47 100.34 49.62 49.46 106.28 57.54 65.69 58.24 140.45 168.83 32.50 22.41 304.04 229.80 158.80 197.29 150.65 58.50 97.62 125.20 77.88 78.33 8 E2a_E3a KnownJunction 0 64.75 100.31 218.62 125.23 124.19 245.14 113.76 123.72 102.69 250.68 246.27 102.33 25.32 466.19 504.73 327.35 286.11 262.07 101.46 165.55 176.81 165.21 186.35 9 I2 Intron 0 17.76 12.05 24.32 15.28 32.96 30.28 18.25 21.61 17.28 28.11 17.89 11.06 12.27 25.60 17.70 21.77 21.10 16.88 11.66 23.80 5.43 7.35 9.97 10 I2_AR1 ActiveIntronRegion 0 21.72 16.11 29.22 20.61 36.30 34.65 24.44 24.12 21.18 31.19 21.70 13.05 13.89 28.30 18.00 20.97 24.69 14.41 9.28 24.65 4.27 7.23 9.13 11 E3_Aa NovelBoundary 1 22.45 31.11 37.40 15.88 64.94 71.21 39.48 14.58 33.51 37.04 19.37 55.97 0.00 49.62 14.34 39.48 8.98 40.00 9.22 45.51 13.65 11.63 16.13 12 ER3a ExonRegion 0 89.78 127.23 246.54 140.55 127.20 213.34 130.42 133.01 136.60 262.99 290.74 82.33 47.17 437.57 429.40 314.22 286.75 304.96 91.37 208.94 187.15 142.45 134.89 13 E3a_E4a KnownJunction 0 167.59 192.27 359.74 200.54 298.05 257.69 225.76 225.70 186.02 335.48 392.63 127.39 72.24 587.03 674.58 480.98 379.71 376.11 167.82 302.52 231.48 253.63 177.38 14 ER4a ExonRegion 0 125.82 217.63 293.95 159.47 203.31 256.91 184.15 186.21 147.50 295.02 374.81 106.73 55.19 508.61 504.84 402.11 374.42 342.16 152.98 226.75 247.74 185.45 160.86 15 E4a_E5a KnownJunction 0 160.18 243.31 298.69 190.02 272.33 273.19 218.91 205.08 129.83 296.80 296.29 93.78 60.55 493.91 604.24 339.74 276.58 317.41 122.54 216.68 230.00 202.93 129.67 16 ER5a ExonRegion 0 181.33 257.48 357.07 247.86 228.36 236.88 172.41 223.12 162.35 355.21 378.82 121.14 100.49 487.18 534.36 404.93 396.35 372.15 148.51 261.89 236.17 206.79 189.51 17 E5a_E6a KnownJunction 0 222.78 298.76 445.22 362.52 239.05 207.89 190.96 224.72 215.83 372.41 454.01 181.41 150.48 458.30 514.00 487.48 403.27 350.70 213.28 288.65 223.26 255.40 220.83 18 E5a_E7a NovelJunction 0 0.00 5.92 4.20 0.00 6.96 0.00 24.69 4.11 0.00 16.57 7.53 12.60 6.33 33.14 37.95 20.25 13.65 6.88 4.80 0.00 9.45 11.08 0.00 19 I5 Intron 0 31.80 8.04 6.50 7.23 3.17 3.62 3.66 2.04 2.91 8.78 4.59 5.64 1.53 9.93 9.58 8.23 10.44 7.26 3.78 7.57 5.23 4.94 0.00 20 I5_AR1 ActiveIntronRegion 0 32.25 8.17 6.59 7.34 3.22 3.68 3.72 2.07 2.96 8.92 4.66 5.73 1.55 10.09 9.73 8.35 10.60 7.38 3.84 7.69 5.31 5.02 0.00 21 ER6a ExonRegion 0 249.31 281.44 470.72 394.07 281.68 289.66 209.35 248.47 219.85 427.65 528.89 242.72 167.57 634.29 765.39 516.28 464.67 385.64 157.74 317.55 223.13 283.53 252.31 22 E6_Da NovelBoundary 0 12.97 65.91 34.77 29.47 192.53 77.46 130.72 27.60 20.92 20.25 7.32 37.21 0.00 28.61 19.04 28.54 38.80 31.17 4.80 46.28 14.83 5.76 29.19 23 E6a_E7a KnownJunction 0 443.34 294.82 428.28 376.84 346.60 337.08 225.89 204.51 162.70 359.79 520.34 291.24 169.47 804.23 898.95 614.71 506.68 330.92 208.19 344.96 212.51 347.75 304.49 24 I6 Intron 0 11.11 18.06 24.33 27.05 43.21 12.58 15.50 14.90 13.37 21.16 9.10 16.76 9.80 24.05 25.47 20.80 16.88 12.75 9.00 22.90 3.56 12.90 10.67 25 I6_AR1 ActiveIntronRegion 0 10.50 18.64 31.74 32.97 53.67 14.01 19.72 18.69 16.88 26.77 10.70 16.00 8.75 27.04 29.60 22.71 18.92 13.00 6.69 27.64 3.37 13.93 9.54 26 ER7a ExonRegion 0 345.65 311.28 520.61 394.81 315.36 344.80 267.69 256.43 208.97 439.48 578.17 208.23 136.79 687.66 678.27 472.57 556.36 359.39 173.83 375.94 268.01 267.78 240.87 27 E7_Da NovelBoundary 1 69.20 84.79 155.61 105.08 68.76 108.29 72.43 77.30 66.15 137.51 114.50 6.45 6.98 28.49 35.60 112.45 77.61 74.12 39.06 105.85 71.04 46.72 32.95 28 E7a_E8a KnownJunction 0 425.41 391.71 413.14 285.64 344.82 418.28 382.18 199.04 160.62 310.93 533.08 212.32 119.47 606.51 605.35 369.82 515.57 203.08 155.96 378.20 316.92 212.73 159.97 29 E7a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E8_Ab NovelBoundary 1 153.95 140.37 150.44 123.13 78.27 154.12 140.97 95.87 65.07 118.35 160.04 27.76 27.92 51.56 60.20 106.81 137.73 83.82 54.97 122.27 104.96 82.18 75.12 31 ER8a ExonRegion 0 409.55 365.03 580.21 412.27 326.44 405.27 332.98 294.70 244.86 468.22 574.07 222.97 103.18 630.97 575.17 381.92 547.95 406.04 157.68 389.89 300.26 227.10 194.55 32 ER8b ExonRegion 0 458.82 360.96 566.77 414.19 337.56 423.21 324.91 293.57 252.19 442.71 530.04 235.69 131.17 604.12 617.42 506.10 489.05 410.37 197.09 359.44 283.38 274.83 217.68 33 E8_Da NovelBoundary 1 50.23 33.55 25.96 26.60 24.62 20.90 46.02 15.28 16.41 19.39 7.42 36.91 52.92 12.36 39.31 15.47 37.12 17.08 9.41 27.04 3.09 22.53 19.97 34 E8a_E9a KnownJunction 0 703.16 420.98 515.15 404.94 452.38 478.30 350.30 284.44 251.99 391.27 527.66 254.18 190.90 552.71 748.13 748.44 506.12 422.20 265.23 376.34 233.27 356.69 274.27 35 I8 Intron 0 24.74 16.92 35.45 31.98 31.00 19.61 23.86 18.37 10.75 22.68 12.06 21.77 9.86 18.65 17.46 24.43 20.59 25.39 11.67 23.60 10.70 11.76 12.21 36 I8_SR1 SilentIntronRegion 0 24.93 17.02 35.71 32.23 31.23 19.77 24.04 18.51 10.83 22.86 12.15 21.94 9.94 18.79 17.59 24.60 20.75 25.56 11.76 23.77 10.78 11.85 12.31 37 E9_Aa NovelBoundary 0 68.90 24.60 84.06 73.38 74.53 56.73 43.68 35.36 27.49 32.37 19.37 6.30 13.47 28.37 24.60 67.33 55.73 49.83 32.19 47.23 14.89 16.04 22.45 38 ER9a ExonRegion 0 242.39 305.57 440.35 338.61 376.23 377.76 261.82 230.60 181.43 364.23 399.26 306.61 213.26 540.76 614.52 448.88 378.34 397.36 166.98 296.05 222.46 237.69 209.63 39 E9a_E10a KnownJunction 0 188.85 234.04 495.70 343.15 271.99 277.62 193.96 261.56 169.07 391.00 312.39 279.39 159.57 555.95 715.74 316.67 295.75 338.76 101.84 245.95 186.75 146.04 232.79 40 E10_Aa NovelBoundary 0 24.82 11.71 37.37 18.91 83.02 42.31 18.24 16.72 17.56 32.05 10.37 21.01 6.33 34.49 38.20 23.33 8.42 27.65 26.17 18.02 0.00 12.43 10.24 41 ER10a ExonRegion 0 154.25 207.26 487.51 367.52 223.42 231.36 165.35 229.93 183.28 403.38 245.92 291.83 182.07 556.84 631.68 331.22 301.09 163.33 157.33 299.34 135.82 212.99 191.90 42 E10a_E11a KnownJunction 0 248.78 417.89 627.80 450.43 439.47 278.14 364.87 300.42 211.54 488.59 561.09 285.39 233.59 604.45 722.67 482.61 507.25 408.65 237.65 360.68 256.93 240.34 273.42 43 E10a_E12a NovelJunction 0 0.00 0.00 4.79 8.79 3.48 0.00 0.00 0.00 0.00 5.64 10.27 6.30 0.00 9.01 19.90 3.16 4.68 11.28 12.24 5.88 0.00 6.25 3.24 44 ER11a ExonRegion 0 207.71 389.17 550.72 413.36 325.50 285.50 290.23 276.45 219.10 446.89 548.34 291.35 166.45 486.57 563.81 398.03 574.36 390.64 181.63 300.46 302.77 229.96 220.13 45 E11_Da NovelBoundary 0 34.60 47.36 28.18 14.52 62.31 88.30 34.58 21.28 10.73 20.52 16.37 24.31 13.64 18.95 14.46 44.69 13.46 14.80 21.84 20.96 8.65 0.00 20.66 46 E11a_E12a KnownJunction 0 303.54 501.82 503.32 424.75 375.72 354.51 356.17 216.99 208.39 405.78 445.90 212.32 72.07 592.92 788.56 504.40 515.75 469.17 233.32 291.72 282.14 302.06 277.00 47 I11_AR1 ActiveIntronRegion 0 28.21 15.36 52.64 27.09 24.13 17.31 25.78 21.87 11.35 22.53 12.38 17.62 0.73 27.02 22.13 42.58 10.50 28.69 15.98 14.42 6.88 11.15 13.87 48 ER12a ExonRegion 0 350.58 394.11 613.06 397.52 347.90 390.71 285.83 305.48 216.78 458.42 586.42 306.77 170.28 633.29 721.65 552.41 562.55 511.19 235.00 322.90 329.29 281.91 303.51 49 E12_Da KnownBoundary 0 954.98 584.70 698.23 524.84 528.69 613.74 489.90 342.43 255.03 448.11 727.76 481.51 501.10 812.88 1101.93 1036.48 677.23 577.90 423.73 397.63 437.14 400.28 510.81 50 ER12b ExonRegion 0 132.98 158.56 235.54 174.27 162.20 129.03 125.74 129.18 87.13 187.80 189.77 145.80 70.97 266.99 308.02 184.20 183.49 122.93 75.57 130.49 90.53 129.44 98.15 51 IG9 Intergenic 0 0.88 2.81 8.83 1.54 2.03 6.08 5.22 4.45 7.38 6.73 14.69 10.59 4.50 6.79 4.30 12.53 7.76 10.86 2.20 11.76 4.57 3.31 6.09 52 IG9_SR1 SilentIntergenicRegion 0 0.53 3.30 9.32 1.35 1.98 6.23 5.37 4.58 9.05 7.43 15.99 16.89 7.42 6.60 7.48 16.56 8.65 15.28 1.84 17.96 4.73 4.67 8.87 53 IG9_AR1 ActiveIntergenicRegion 0 1.14 2.46 8.53 1.70 2.09 6.02 5.13 4.38 6.18 6.26 13.83 5.97 2.35 6.99 1.96 9.61 7.14 7.64 2.49 7.22 4.48 2.32 4.06