Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TNFSF13 Gene 0 14.84 1.18 4.99 3.23 4.98 7.31 3.56 3.40 3.92 5.97 5.59 7.58 7.55 47.32 56.42 39.56 47.26 3.00 1.28 2.57 6.32 4.76 5.59 2 483039 Transcript 0 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 3.50 8.60 0.00 0.00 0.00 0.00 0.00 0.00 3 380535 Transcript 0 5.56 3.66 9.71 6.50 3.40 4.45 2.35 4.52 1.38 7.73 11.43 8.12 4.25 19.56 36.88 34.16 57.13 5.03 1.31 4.12 9.51 6.80 9.71 4 396542 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 438470 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 436057 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 349228 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 338784 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 396545 Transcript 0 10.89 0.00 1.83 1.96 0.00 2.90 0.00 2.55 1.13 1.67 0.00 12.00 0.00 2.35 0.00 4.27 12.34 0.00 0.00 0.00 2.78 5.39 0.00 10 ER1a ExonRegion 1 6.35 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 6.77 0.00 0.00 11.37 10.15 29.72 8.25 0.00 3.19 1.06 0.00 2.08 1.47 11 ER1b ExonRegion 1 10.58 0.00 0.00 1.36 0.00 1.57 0.00 0.00 0.00 0.49 11.60 0.00 0.00 23.43 15.75 56.47 16.50 0.00 3.19 2.43 0.00 8.33 2.94 12 ER1c ExonRegion 1 10.58 0.00 0.00 1.36 0.00 1.83 0.00 0.00 0.00 1.15 13.53 0.00 0.00 27.61 20.31 56.47 16.50 0.00 3.19 4.26 0.00 8.33 2.94 13 ER1d ExonRegion 0 15.37 7.02 5.22 9.35 13.23 5.12 3.94 7.06 0.00 9.22 22.08 4.09 8.22 77.45 127.62 132.48 118.15 2.51 7.03 8.66 18.60 15.61 4.87 14 E1_Da KnownBoundary 0 3.56 2.50 9.93 14.52 6.37 17.21 8.21 6.45 1.79 11.98 17.74 11.55 0.00 31.67 49.82 112.53 114.63 8.58 4.71 8.69 5.00 13.04 4.18 15 E1a_E1h KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 1.67 2.21 0.00 0.00 2.88 5.93 7.60 9.26 0.00 0.00 0.00 8.65 0.00 0.00 16 E1a_E3a KnownJunction 0 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 3.50 8.60 0.00 0.00 0.00 0.00 0.00 0.00 17 ER1e ExonRegion 0 11.13 7.33 19.42 12.99 6.81 8.90 4.71 9.04 2.75 15.47 22.85 16.25 8.50 39.12 73.77 68.33 114.26 10.06 2.62 8.24 19.03 13.59 19.42 18 E1_Ae KnownBoundary 0 12.74 0.00 6.71 14.55 0.00 10.96 6.67 17.70 2.58 17.84 30.74 18.46 18.51 72.40 102.36 85.45 170.92 6.51 0.00 12.40 23.35 27.31 26.29 19 ER1f ExonRegion 0 9.06 2.15 9.03 5.60 6.63 6.93 9.77 6.66 4.31 12.12 13.15 14.96 17.13 76.36 128.59 123.11 81.02 5.71 4.03 8.30 14.42 11.18 13.18 20 E1_Af KnownBoundary 0 14.30 3.35 15.91 4.10 16.04 5.22 6.18 1.77 6.89 17.86 5.11 13.35 26.13 61.98 53.40 46.74 45.07 4.81 0.00 0.00 17.67 0.00 16.05 21 ER1g ExonRegion 0 9.98 3.00 5.03 4.83 5.15 7.34 4.30 2.27 4.24 9.37 7.78 16.68 19.99 85.75 110.97 57.25 60.58 3.84 0.49 3.96 10.79 8.44 17.09 22 E1_Ag KnownBoundary 0 26.45 0.00 11.80 10.72 12.56 10.05 2.03 1.68 3.59 11.17 9.69 11.55 6.66 155.57 283.83 210.63 125.20 9.45 4.80 0.00 13.10 28.90 48.40 23 ER1h ExonRegion 0 25.59 0.02 9.16 5.18 9.35 17.45 7.72 6.02 7.07 13.66 10.21 19.78 20.81 116.62 109.11 85.47 111.48 7.51 1.39 5.00 10.93 9.62 14.44 24 E1_Ah KnownBoundary 0 114.09 0.00 10.02 1.43 49.58 35.55 9.36 4.68 14.70 10.31 6.58 30.61 26.13 83.70 98.28 48.19 69.19 6.26 0.00 2.75 5.99 3.06 8.54 25 ER1i ExonRegion 0 30.78 1.78 11.19 3.47 13.06 19.99 6.69 6.74 14.50 12.28 7.73 16.18 12.35 112.31 120.29 57.89 90.64 7.98 1.79 4.15 11.65 5.73 4.14 26 E1_Db NovelBoundary 0 3.48 0.00 8.16 2.06 3.90 0.00 0.00 1.68 1.71 6.82 4.37 13.65 0.00 21.19 14.96 3.50 3.83 0.00 0.00 0.00 0.00 0.00 4.18 27 E1b_E2a KnownJunction 0 60.68 0.00 11.59 8.22 22.41 8.97 9.41 13.88 15.83 7.41 7.84 0.00 0.00 141.74 108.78 74.60 119.87 0.00 4.80 3.07 18.66 7.10 12.38 28 E1b_E3a NovelJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 1.26 0.00 0.00 0.00 10.42 8.90 7.60 0.00 1.58 0.00 0.00 0.00 0.00 0.00 29 E1b_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E1b_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 Ix Intron 0 6.29 2.86 9.43 1.91 6.70 5.45 3.31 3.22 0.58 10.96 8.16 5.70 3.06 19.80 22.37 12.09 9.82 12.07 2.49 1.66 2.41 1.63 2.76 32 Ix_AR1 ActiveIntronRegion 0 6.33 2.88 9.48 1.92 6.74 5.48 3.33 3.24 0.58 11.03 8.21 5.73 3.08 19.91 22.50 12.16 9.88 12.14 2.51 1.67 2.43 1.64 2.76 33 ER2a ExonRegion 0 17.79 0.00 7.93 3.69 12.33 16.67 6.74 10.04 9.10 5.79 7.02 2.41 0.00 66.55 63.75 40.63 76.13 1.57 4.39 0.46 9.68 4.40 2.97 34 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 Ix Intron 1 10.57 4.35 5.86 2.90 6.68 3.92 2.36 7.35 0.66 3.66 9.65 8.17 2.75 13.77 28.30 14.84 14.10 8.84 2.27 2.28 3.14 2.23 3.14 37 Ix_AR1 ActiveIntronRegion 0 10.72 4.41 5.94 2.94 6.77 3.98 2.39 7.45 0.67 3.71 9.79 8.29 2.79 13.94 28.70 15.05 14.30 8.96 2.30 2.31 3.19 2.26 3.19 38 E3_Ac NovelBoundary 0 20.74 2.63 4.91 6.49 8.23 9.54 2.25 4.93 1.50 6.82 7.32 0.00 0.00 14.60 5.93 4.36 3.55 0.00 0.00 0.00 0.00 2.33 3.67 39 ER3a ExonRegion 1 13.40 2.03 3.68 1.82 2.68 22.01 4.85 0.58 11.53 4.21 5.80 0.00 0.00 34.11 66.73 20.80 70.42 1.23 3.19 0.00 4.41 0.00 0.00 40 ER3b ExonRegion 1 16.93 2.03 3.68 3.18 3.57 16.50 3.53 1.73 12.35 5.73 5.80 0.00 0.00 37.90 70.60 22.79 78.12 3.08 3.19 0.00 4.41 0.69 0.00 41 ER3c ExonRegion 1 33.21 1.99 5.37 5.39 3.57 14.06 0.98 3.21 11.12 5.16 6.54 0.52 0.00 39.25 81.10 31.49 83.39 0.04 1.44 2.03 3.67 3.92 0.42 42 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 Ix Intron 0 4.18 3.35 9.01 4.01 3.52 6.64 1.74 3.39 3.03 9.56 8.27 4.69 1.27 8.96 20.05 11.74 7.60 6.34 2.10 4.20 2.18 0.69 3.87 44 Ix_SR1 SilentIntronRegion 0 4.50 3.60 9.63 4.18 3.79 7.14 1.88 3.65 3.26 10.15 8.90 4.93 1.37 9.54 21.42 12.61 8.09 6.83 2.26 4.52 2.34 0.74 4.16 45 ER4a ExonRegion 0 31.37 0.87 2.59 2.82 4.18 10.97 2.68 3.25 4.69 2.52 0.03 1.13 0.00 41.71 49.25 34.17 18.31 0.90 2.54 1.11 3.30 1.79 2.37 46 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 Ix Intron 0 3.56 2.85 5.63 2.84 1.50 6.17 1.85 2.89 2.06 8.62 5.96 5.42 1.08 8.83 15.59 5.00 9.25 11.07 2.68 5.37 1.24 1.75 1.65 48 Ix_SR1 SilentIntronRegion 0 3.68 2.96 5.83 2.95 1.56 6.41 1.93 3.00 2.15 8.97 6.20 5.64 1.13 9.19 16.21 5.20 9.62 11.51 2.78 5.58 1.28 1.82 1.71 49 ER5a ExonRegion 0 25.03 0.00 0.00 0.30 2.68 2.79 5.93 0.15 0.00 0.80 0.00 2.26 0.00 8.47 10.60 10.73 4.74 1.45 0.00 0.00 0.00 0.72 0.00 50 E5_Db KnownBoundary 0 34.75 0.00 4.73 1.96 3.14 19.99 9.89 4.44 1.30 3.71 4.63 11.25 0.00 7.89 14.46 8.54 16.36 1.74 0.00 3.07 0.00 0.00 0.00 51 ER5b ExonRegion 0 20.88 0.00 2.12 0.00 2.07 3.67 6.50 1.73 0.00 0.00 0.00 5.51 0.00 6.57 11.61 8.92 6.60 0.00 0.00 0.00 0.00 0.00 0.00 52 ER5c ExonRegion 0 36.68 0.00 1.49 1.13 1.22 0.86 1.86 0.96 0.00 0.00 0.00 2.07 0.00 6.41 5.03 4.05 4.71 0.00 0.00 0.00 1.20 0.00 0.00 53 E5c_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 Ix Intron 0 1.38 2.65 2.77 2.20 1.74 1.99 2.30 2.24 0.80 7.79 9.65 10.22 3.71 9.97 12.19 7.10 5.73 3.99 2.07 6.00 1.91 0.45 2.55 55 Ix_AR1 ActiveIntronRegion 0 1.43 2.92 3.00 2.43 1.92 2.20 2.50 2.47 0.88 8.44 10.44 11.20 4.10 10.96 13.02 7.83 6.26 4.22 2.00 6.50 1.98 0.50 2.59 56 ER6a ExonRegion 0 17.65 0.00 0.64 2.62 0.00 0.51 0.00 0.72 0.00 0.51 0.00 0.83 0.00 0.28 2.01 0.60 4.07 0.00 0.00 0.00 0.87 1.68 0.00 57 E6_Da KnownBoundary 0 27.04 0.00 1.09 3.46 7.30 2.10 0.00 0.00 3.39 1.61 0.00 0.00 0.00 0.00 5.93 3.42 12.81 0.00 0.00 0.00 0.00 0.00 0.00 58 E6a_E6b KnownJunction 0 10.89 0.00 1.83 1.96 0.00 2.90 0.00 2.55 1.13 1.67 0.00 12.00 0.00 2.35 0.00 4.27 12.34 0.00 0.00 0.00 2.78 5.39 0.00 59 E6_Db KnownBoundary 0 31.64 0.00 1.39 0.00 12.48 0.00 0.00 3.86 0.00 4.08 0.00 5.25 0.00 5.77 0.00 8.37 8.42 2.53 0.00 0.00 0.00 0.00 0.00 60 ER6b ExonRegion 0 5.64 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER6c ExonRegion 0 2.57 0.00 0.02 0.02 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.05 0.00 0.02 0.04 0.02 0.08 0.00 0.00 0.00 0.01 0.03 0.00 62 E6_Ab KnownBoundary 0 7.26 0.00 3.08 2.06 7.81 10.73 3.71 0.00 3.21 1.67 0.00 6.15 0.00 5.53 0.00 12.56 13.09 0.00 0.00 0.00 2.53 0.00 0.00 63 ER6d ExonRegion 0 1.62 0.00 0.74 0.82 0.00 0.15 0.46 0.21 0.00 0.43 0.00 0.95 0.00 0.47 0.05 0.68 2.10 0.00 0.00 0.00 0.10 0.90 0.00 64 E6_Dc KnownBoundary 0 0.00 0.00 1.69 0.00 12.82 5.51 0.00 0.00 2.60 0.00 2.26 0.00 0.00 2.77 5.81 11.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 ER6e ExonRegion 0 1.33 0.00 0.58 0.00 1.22 0.00 0.41 0.84 0.59 0.80 0.28 0.00 3.56 1.91 2.26 0.14 0.00 0.00 0.00 0.00 0.00 0.34 0.00 66 ER6f ExonRegion 0 4.23 0.00 2.45 0.00 5.35 0.00 2.65 1.73 1.24 2.29 1.93 0.00 14.07 9.74 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 ER6g ExonRegion 0 2.42 0.00 0.70 0.00 3.82 0.00 0.76 0.25 0.53 1.64 1.66 0.00 10.05 6.26 3.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00