Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TP53 Gene 0 252.72 292.18 176.40 127.52 135.26 30.23 55.56 76.25 44.78 198.08 898.66 255.30 361.42 666.43 528.36 813.53 591.48 352.40 104.10 208.49 286.54 158.08 141.05 2 269305 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 445888 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 0.00 0.00 4 455263 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 420246 Transcript 1 18.22 18.85 3.59 10.11 22.52 1.70 8.33 6.03 1.08 5.71 43.33 29.99 79.39 29.71 44.58 40.45 46.53 14.92 8.00 10.74 5.70 12.09 0.43 6 414315 Transcript 1 2.01 2.40 1.79 1.82 3.84 0.00 0.68 1.33 0.00 3.12 1.24 8.33 18.16 6.08 9.60 20.04 6.69 8.62 0.00 1.69 3.62 2.14 9.56 7 359597 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 419024 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 396473 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 413465 Transcript 0 5.56 4.76 0.59 0.70 5.37 1.23 2.61 0.00 0.02 0.00 1.40 5.95 2.59 8.15 14.70 1.00 5.47 1.28 5.34 5.70 2.93 2.70 4.89 11 ER1a ExonRegion 0 26.24 8.85 4.02 4.07 14.24 4.26 8.98 1.22 3.54 3.86 64.61 0.57 2.07 90.62 45.48 86.54 61.07 23.42 14.99 21.37 41.87 18.08 32.65 12 E1_Ab KnownBoundary 0 61.86 26.18 11.95 8.02 51.78 10.56 26.19 2.55 9.87 9.59 132.72 11.70 19.80 171.94 68.98 205.76 152.69 50.86 48.94 45.83 69.68 40.60 72.05 13 ER1b ExonRegion 1 107.57 221.22 96.46 61.61 33.54 40.62 56.01 37.68 25.47 139.87 789.60 23.28 59.35 474.19 399.68 878.87 598.67 445.56 208.66 200.53 316.92 151.33 190.79 14 E1a_E2a KnownJunction 0 17.34 2.43 77.97 30.27 0.00 0.00 3.93 14.50 11.05 64.44 119.87 112.24 59.25 36.38 58.22 58.28 79.29 49.08 13.27 29.27 57.02 14.45 7.26 15 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 0.00 0.00 16 I1_AR1 ActiveIntronRegion 0 16.38 11.11 19.96 36.04 8.53 6.68 9.04 3.50 1.68 8.56 29.05 18.67 17.59 24.58 47.64 32.48 15.03 28.05 5.80 25.19 10.02 8.54 28.08 17 ER2a ExonRegion 0 8.47 8.13 51.77 20.44 2.68 0.92 1.32 8.64 10.81 67.67 148.35 94.17 69.18 46.29 63.83 63.90 100.68 60.51 17.52 35.11 82.64 13.54 11.75 18 ER2b ExonRegion 1 11.06 26.56 99.52 63.79 9.47 4.00 4.51 49.65 32.89 182.21 1147.18 118.93 159.70 522.68 402.53 610.68 788.58 233.34 154.39 232.17 424.84 138.30 134.61 19 E2a_E3a KnownJunction 1 3.78 54.53 159.49 114.54 49.32 4.94 21.82 68.47 37.15 246.11 1388.09 222.22 198.20 1678.51 1259.04 2057.92 814.40 361.31 661.38 417.83 386.48 432.55 443.89 20 E3a_E4a KnownJunction 1 3.78 60.45 117.50 84.40 35.82 7.84 8.26 62.56 29.46 203.48 844.53 215.77 243.65 725.24 744.79 1369.64 460.68 576.58 192.01 240.14 296.41 212.79 239.78 21 ER3a ExonRegion 1 5.58 53.06 186.98 127.00 31.99 4.83 16.01 86.58 47.83 304.14 1357.16 237.53 233.22 1403.53 1152.46 2093.73 762.51 682.07 486.06 379.88 402.08 402.02 432.35 22 ER4a ExonRegion 0 29.68 63.63 131.25 79.32 73.90 20.13 17.78 86.90 37.59 214.05 711.31 174.55 334.18 621.75 445.87 1017.56 477.04 636.96 128.38 210.80 267.96 125.38 203.71 23 E4_Da KnownBoundary 0 31.34 111.43 133.29 56.84 133.28 48.78 50.04 78.41 48.21 214.82 729.34 267.39 409.55 652.78 577.17 666.24 528.94 473.90 104.38 171.04 290.72 171.94 141.19 24 E4a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER4b ExonRegion 0 25.84 178.69 106.72 43.90 63.34 53.45 70.50 54.76 35.64 203.70 872.22 221.14 377.49 580.07 480.54 510.62 518.24 258.34 83.91 183.31 337.05 142.28 101.01 26 E4_Ab KnownBoundary 0 68.16 398.22 131.01 63.63 48.81 86.48 127.10 72.29 32.41 245.33 936.50 284.64 469.29 656.37 637.00 796.88 667.51 331.05 102.69 196.10 390.62 202.13 112.68 27 ER4c ExonRegion 0 97.43 189.45 128.21 60.97 40.31 18.87 30.79 79.58 38.98 213.72 838.16 187.11 370.63 783.22 486.87 644.86 640.51 295.30 63.32 207.21 347.44 126.44 98.09 28 E4_Db NovelBoundary 0 3.70 2.70 5.71 9.36 6.79 0.00 0.00 14.83 2.63 17.68 7.16 24.16 12.99 12.01 38.20 48.62 3.65 35.57 60.14 18.73 3.15 4.65 11.78 29 E4b_E5a KnownJunction 0 173.29 159.38 164.31 64.03 59.76 33.79 40.19 95.37 47.63 229.67 907.76 213.82 603.53 809.82 583.60 690.25 613.93 490.02 67.95 279.89 361.58 142.18 120.53 30 ER5a ExonRegion 0 81.41 127.75 161.33 74.60 50.49 17.84 26.60 77.24 43.63 217.79 868.75 216.80 484.60 824.67 464.09 686.38 596.91 473.90 87.41 208.00 320.81 113.91 120.23 31 E5a_E6a KnownJunction 0 50.31 144.91 179.47 99.12 32.26 36.85 30.56 84.33 63.28 215.65 853.64 207.37 375.79 846.79 465.79 871.99 540.63 502.87 87.06 211.57 297.89 128.71 58.64 32 ER6a ExonRegion 0 66.55 169.58 175.22 106.02 80.32 28.71 47.04 74.34 47.91 238.39 1013.95 231.76 470.00 992.47 546.10 776.62 751.73 500.82 88.23 251.72 344.54 137.14 126.28 33 E6_Da KnownBoundary 0 3.48 6.51 8.10 10.19 11.38 0.00 2.25 2.51 0.00 8.54 7.42 18.16 40.74 17.48 22.99 35.80 17.77 26.12 3.86 7.93 11.86 2.88 20.83 34 E6a_E7a KnownJunction 0 85.20 141.82 179.56 98.19 76.57 24.08 51.67 82.35 57.84 248.63 975.25 222.67 495.91 712.99 487.18 654.10 583.82 560.49 111.06 269.79 269.10 109.79 129.58 35 ER6b ExonRegion 0 2.01 2.40 1.79 1.82 3.84 0.00 0.68 1.33 0.00 3.12 1.24 8.33 18.16 6.08 9.60 20.04 6.69 8.62 0.00 1.69 3.62 2.14 9.56 36 ER7a ExonRegion 0 115.18 210.79 209.72 150.38 86.18 25.19 37.99 85.64 64.51 241.87 1090.72 289.76 508.48 852.97 618.23 885.26 799.57 575.20 122.52 267.66 339.43 162.68 148.59 37 E7a_E8a KnownJunction 0 129.36 340.47 272.82 212.63 101.36 15.39 40.54 93.20 67.51 286.35 1341.18 289.29 462.15 988.00 625.75 788.34 893.31 451.51 125.09 327.83 442.45 153.14 73.58 38 E7a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER8a ExonRegion 0 86.79 311.21 218.43 155.15 78.36 33.74 62.12 77.34 67.58 246.56 1173.54 296.71 484.51 907.57 598.34 879.19 741.01 617.62 124.88 285.98 375.32 173.24 129.38 40 E8a_E9a KnownJunction 0 144.54 278.11 284.61 231.41 210.36 26.12 100.12 107.12 74.97 279.50 1251.63 403.78 752.39 976.81 802.15 1209.43 774.10 809.71 195.11 390.98 365.85 236.06 210.25 41 ER9a ExonRegion 0 117.87 223.25 249.43 190.12 145.83 23.20 56.34 91.49 71.22 253.73 1126.59 298.91 438.52 971.03 709.32 1249.46 696.53 670.01 151.18 257.10 354.29 192.75 188.50 42 E9a_E10a KnownJunction 0 14.52 0.00 0.00 0.00 3.65 0.00 1.99 4.35 2.86 0.00 11.63 7.20 0.00 14.83 20.40 25.46 17.58 0.00 0.00 0.00 0.00 5.82 0.00 43 E9a_E10b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E9a_E11a KnownJunction 1 121.43 246.27 291.03 214.82 97.88 48.38 32.46 95.46 78.21 314.69 1059.90 273.69 365.72 1054.51 832.32 1710.58 579.62 730.82 244.05 251.58 408.22 288.59 286.99 45 ER10a ExonRegion 0 18.47 10.97 1.71 5.58 17.11 0.72 5.90 6.86 1.68 2.75 30.28 7.74 22.88 28.50 29.89 19.36 42.71 8.06 0.00 2.19 4.14 12.88 0.00 46 E10_Da KnownBoundary 0 25.04 22.96 4.91 15.55 39.56 2.50 10.20 9.69 1.42 10.66 44.85 5.55 65.42 28.61 55.50 26.06 65.26 14.63 0.00 5.82 8.77 17.57 0.00 47 ER10b ExonRegion 1 18.22 18.85 3.59 10.11 22.52 1.70 8.33 6.03 1.08 5.71 43.33 29.99 79.39 29.71 44.58 40.45 46.53 14.92 8.00 10.74 5.70 12.09 0.43 48 E10_Ab KnownBoundary 0 5.78 14.01 1.83 8.92 15.11 0.00 5.87 4.27 1.39 4.73 39.33 39.31 54.05 30.90 24.60 47.34 26.46 8.37 17.13 11.31 2.72 8.02 0.00 49 ER10c ExonRegion 0 2.34 4.41 1.77 4.84 3.99 0.00 1.80 4.56 1.24 2.42 22.70 23.95 26.64 24.53 33.21 28.39 14.75 14.98 6.85 3.03 1.78 5.01 7.37 50 E10_Db NovelBoundary 0 11.19 0.00 18.92 49.78 4.33 0.00 2.25 27.56 15.86 13.19 11.74 12.45 0.00 19.19 30.41 23.16 12.53 19.77 9.60 0.00 0.00 8.21 11.44 51 E10_Dc NovelBoundary 0 31.71 2.83 24.39 39.92 20.12 0.00 20.89 37.62 13.19 33.90 9.74 0.00 8.28 0.00 6.30 25.29 16.74 23.67 4.80 15.60 2.78 2.69 8.19 52 E10c_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.54 1.79 0.00 10.11 12.45 20.45 16.30 40.55 19.82 13.28 10.49 0.00 0.00 0.00 5.02 0.00 53 ER10d ExonRegion 0 0.00 0.17 0.00 0.80 0.00 0.00 0.00 7.92 1.13 0.00 11.60 8.66 16.02 15.02 38.20 23.03 11.55 12.47 0.00 0.00 0.37 4.86 5.87 54 ER11a ExonRegion 0 132.41 244.35 211.41 143.78 91.75 20.29 32.41 94.14 63.53 293.48 1186.10 283.11 344.56 874.37 708.37 1049.66 750.91 528.92 132.42 260.51 401.14 211.27 184.08 55 E11a_E12a KnownJunction 0 230.86 439.99 97.36 73.22 85.48 12.55 46.86 47.73 38.57 203.56 1005.73 236.78 461.82 545.59 425.12 720.07 515.10 262.07 85.18 254.39 349.10 125.96 92.36 56 ER12a ExonRegion 0 483.28 477.19 234.35 184.83 236.13 43.09 85.27 97.87 52.97 224.64 1042.98 358.61 437.68 716.60 649.18 995.90 661.23 320.81 109.60 234.63 299.11 201.69 168.48 57 ER12b ExonRegion 0 15.45 16.37 2.57 3.95 10.03 0.28 1.32 0.35 0.56 2.47 6.86 1.95 6.80 9.42 6.67 13.52 9.74 9.70 6.21 2.13 1.87 1.46 4.85 58 I12 Intron 0 6.50 18.58 13.16 8.92 12.29 1.35 3.93 3.01 2.48 12.50 5.30 3.52 5.86 36.54 51.59 9.28 7.79 41.22 31.78 13.50 5.87 3.97 6.93 59 I12_SR1 SilentIntronRegion 0 6.85 21.97 15.64 10.37 14.35 1.75 4.90 3.28 2.89 14.70 6.35 3.84 5.39 41.38 60.82 10.63 9.32 50.30 36.50 16.17 7.12 4.23 7.78 60 I12_AR1 ActiveIntronRegion 0 20.97 38.82 20.39 7.56 27.49 6.33 9.27 3.93 4.38 10.84 6.15 0.00 0.00 32.33 17.67 14.32 5.70 40.15 39.67 8.70 3.81 8.14 8.28 61 ER13a ExonRegion 0 11.11 9.53 1.18 1.40 10.74 2.46 5.23 0.00 0.03 0.00 2.80 11.91 5.18 16.31 29.39 1.99 10.95 2.55 10.69 11.39 5.86 5.40 9.78