Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ATP2A3 Gene 0 228.49 1.98 39.34 38.47 72.57 14.30 22.10 129.51 58.18 13.13 340.76 189.37 159.46 566.56 545.74 709.85 412.17 4.78 6.97 1.00 4.06 45.13 50.92 2 397045 Transcript 0 38.90 0.00 9.08 5.56 34.80 0.00 14.75 20.37 8.68 1.18 51.75 49.97 58.28 101.65 110.76 114.93 95.84 2.28 0.00 0.00 0.00 5.08 3.41 3 397035 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 397041 Transcript 0 280.79 6.58 64.07 44.25 89.73 12.38 36.66 153.49 51.07 15.55 344.35 305.65 303.23 516.69 458.00 640.77 384.29 11.61 12.52 0.00 5.56 56.70 47.55 5 309890 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 352011 Transcript 0 20.89 0.00 0.00 0.00 0.00 0.00 0.00 3.61 6.86 0.00 4.74 0.00 14.93 22.25 8.90 18.80 8.60 0.00 0.00 0.00 0.00 3.12 0.00 7 359983 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 397039 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.00 0.00 0.00 4.45 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 397043 Transcript 0 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.86 0.85 0.17 0.58 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1a ExonRegion 1 9.15 0.00 1.36 0.91 3.87 1.38 1.81 9.63 6.46 1.02 86.20 10.72 5.68 86.19 76.78 207.70 103.87 0.00 0.00 0.00 1.34 4.21 12.14 11 E2a_E3a KnownJunction 1 46.90 2.76 4.29 10.72 24.96 0.00 2.25 19.14 27.84 2.39 153.62 6.75 6.33 211.20 224.12 334.10 200.65 0.00 0.00 0.00 5.75 28.04 12.63 12 ER2a ExonRegion 1 25.28 1.24 4.83 9.24 15.91 0.20 1.62 25.06 23.74 2.29 131.76 11.55 9.64 228.91 209.53 346.25 160.64 0.00 0.00 0.00 4.16 22.57 12.40 13 ER3a ExonRegion 1 33.69 0.98 6.85 6.91 19.96 4.07 6.65 29.65 23.26 1.42 212.27 41.73 20.17 334.00 313.41 278.84 245.54 0.00 0.00 0.00 2.18 14.81 10.54 14 E3a_E4a KnownJunction 1 23.63 0.00 10.97 8.19 11.29 2.90 11.08 34.50 21.21 1.02 236.17 131.74 12.17 340.34 430.06 208.66 275.27 0.00 0.00 0.00 5.31 11.33 8.62 15 ER4a ExonRegion 1 23.20 0.00 6.22 10.68 18.35 11.02 9.15 31.54 32.41 4.52 252.97 104.94 44.13 469.54 406.70 426.63 320.44 0.00 0.00 0.00 2.62 24.19 27.02 16 E4a_E5a KnownJunction 1 48.68 0.00 11.92 16.78 11.04 0.00 7.64 46.45 33.71 1.67 338.45 74.42 38.15 401.20 482.73 427.84 376.72 0.00 0.00 0.00 5.19 25.29 27.66 17 ER5a ExonRegion 1 46.33 0.00 4.14 18.54 26.26 4.33 8.07 42.02 45.16 6.40 358.42 107.86 64.61 618.92 582.90 630.52 445.12 0.00 0.00 0.00 3.33 30.79 41.41 18 E5a_E6a KnownJunction 1 45.05 0.00 4.61 26.80 11.80 2.90 3.93 69.58 69.21 11.28 325.19 59.87 42.21 451.00 484.09 585.66 468.63 0.00 0.00 0.00 0.00 19.90 31.84 19 ER6a ExonRegion 0 68.93 0.00 3.42 21.34 25.60 7.13 7.27 52.56 59.04 3.91 358.76 164.31 93.34 593.67 522.58 678.42 450.43 0.00 0.00 0.00 4.46 33.98 41.77 20 E6a_E7a KnownJunction 0 108.98 0.00 1.27 21.58 69.19 15.90 7.77 57.91 66.23 6.15 344.77 194.46 126.62 666.32 667.90 850.80 489.95 0.00 0.00 0.00 2.78 42.56 56.94 21 ER7a ExonRegion 0 83.36 1.14 8.99 21.27 53.55 11.11 15.55 63.97 56.83 5.61 449.67 189.59 163.71 762.13 691.27 818.34 611.82 0.00 0.00 0.00 4.71 38.06 61.64 22 E7a_E8a KnownJunction 0 98.61 0.00 7.48 23.41 80.56 5.79 8.39 76.93 55.15 4.51 410.26 264.24 180.51 894.94 736.02 902.33 645.16 0.00 0.00 0.00 10.93 45.86 67.52 23 ER8a ExonRegion 0 63.53 0.22 8.08 13.47 27.84 5.85 8.66 47.38 40.67 5.79 244.82 126.95 85.68 512.29 408.32 469.77 339.48 0.30 0.00 0.00 1.74 30.29 30.65 24 E8a_E9a KnownJunction 1 94.54 0.00 12.77 16.61 36.76 2.27 14.97 31.22 33.19 6.15 349.56 73.52 26.46 495.97 341.06 483.12 418.79 0.00 0.00 0.00 0.00 27.86 7.68 25 Ix Intron 0 55.18 0.38 1.08 2.85 14.82 3.45 5.04 12.27 8.77 0.76 13.85 13.90 7.60 42.26 55.34 86.16 42.67 0.00 0.00 0.00 0.24 3.92 5.21 26 Ix_AR2 ActiveIntronRegion 0 79.60 0.29 1.85 4.62 14.88 2.92 7.38 20.95 13.26 0.11 21.22 21.18 9.66 54.51 68.89 122.09 61.16 0.00 0.00 0.00 0.00 5.68 7.38 27 Ix_SR2 SilentIntronRegion 0 77.45 0.70 0.32 4.09 18.09 3.73 4.02 9.47 5.04 0.00 11.88 19.54 7.85 44.88 43.00 59.50 27.49 0.00 0.00 0.00 0.00 2.29 5.46 28 Ix_AR1 ActiveIntronRegion 0 48.58 0.74 1.45 2.26 14.65 2.67 2.68 9.38 6.81 1.89 8.08 8.03 7.77 36.27 46.36 60.45 37.07 0.00 0.00 0.00 0.27 3.26 4.87 29 ER9a ExonRegion 0 69.94 0.09 5.36 12.77 37.34 8.18 12.44 32.08 29.57 3.43 318.02 96.42 69.56 537.42 383.58 585.01 358.87 0.00 0.00 0.00 3.84 30.18 23.30 30 E9a_E10a KnownJunction 0 90.61 0.00 7.54 18.11 31.32 11.36 20.45 34.34 37.93 5.80 284.02 133.54 89.93 458.36 430.06 574.04 344.09 0.00 0.00 0.00 2.41 32.21 22.62 31 ER10a ExonRegion 0 67.69 0.00 28.60 25.89 25.56 9.88 20.89 71.17 37.04 4.73 292.19 106.30 97.53 552.83 402.51 594.25 378.45 2.73 9.31 0.00 6.38 48.97 42.94 32 E10a_E11a KnownJunction 0 75.94 0.00 32.17 32.56 21.48 2.90 14.97 68.72 43.72 4.22 299.71 91.68 139.76 558.01 358.24 688.79 356.52 0.00 0.00 0.00 0.00 59.40 28.08 33 ER11a ExonRegion 0 75.62 0.63 38.52 35.39 29.55 4.56 14.09 106.40 59.69 7.85 388.40 163.50 102.86 612.35 454.82 707.14 454.20 1.54 5.82 0.95 5.46 48.93 44.43 34 E11a_E12a KnownJunction 0 132.91 2.70 46.45 42.72 57.30 0.00 6.05 122.69 69.15 9.59 338.98 204.07 131.97 644.83 466.90 627.27 434.50 7.05 4.71 2.49 5.31 72.68 70.77 35 ER12a ExonRegion 0 128.05 1.81 39.46 27.52 44.96 13.21 13.73 116.01 75.82 13.54 376.16 227.92 152.31 601.74 467.06 763.27 446.46 2.08 5.64 2.16 3.74 51.59 50.62 36 E12a_E13a KnownJunction 0 149.21 0.00 27.14 21.58 44.65 14.03 24.64 115.25 59.63 7.33 318.19 197.16 114.77 525.40 462.70 638.04 346.14 2.28 4.05 2.68 5.75 42.43 33.46 37 ER13a ExonRegion 0 124.50 2.74 30.40 24.06 41.98 14.32 17.34 111.26 55.76 10.26 326.92 172.09 135.37 590.78 481.30 643.80 383.78 5.22 3.84 2.15 3.72 36.71 50.30 38 E13a_E14a KnownJunction 0 153.36 2.76 24.07 35.39 99.75 13.29 17.84 124.54 62.90 12.17 367.04 118.39 118.66 677.38 632.92 862.59 538.76 15.63 8.00 0.00 6.30 42.80 56.08 39 ER14a ExonRegion 0 122.34 1.86 36.21 30.51 50.25 14.87 15.86 103.95 50.71 12.76 354.35 174.39 139.10 560.09 583.36 653.58 427.63 9.71 7.20 1.61 3.94 45.37 54.36 40 E14a_E15a KnownJunction 0 347.25 2.70 52.27 58.23 141.68 19.36 29.15 161.26 63.28 23.05 468.01 371.52 223.85 706.99 500.65 1147.31 530.62 14.80 11.77 0.00 3.09 60.31 94.92 41 ER15a ExonRegion 0 201.00 2.02 52.66 52.52 68.63 16.05 25.31 164.32 77.67 20.42 448.52 333.15 214.13 760.68 672.87 847.04 588.80 8.87 14.34 1.76 6.91 57.32 59.05 42 E15_Da NovelBoundary 0 47.42 0.00 6.33 10.85 35.40 7.84 6.05 58.04 7.35 0.00 4.90 12.45 14.28 36.85 27.81 101.43 53.20 0.00 7.62 0.00 0.00 6.12 15.54 43 E15a_E16a KnownJunction 0 255.23 0.00 63.87 73.02 91.60 27.31 39.92 175.14 68.17 18.45 539.56 352.31 277.58 912.36 711.79 844.99 646.10 11.15 8.66 3.26 2.66 89.65 31.93 44 Ix Intron 0 84.18 1.40 6.65 9.94 16.95 5.06 8.22 34.90 16.75 1.93 16.01 20.53 13.57 56.10 69.83 84.46 46.38 1.56 1.20 0.80 0.28 7.32 12.90 45 Ix_AR1 ActiveIntronRegion 0 85.79 1.43 6.74 10.07 17.26 5.16 8.39 35.53 17.04 1.97 16.30 20.94 13.82 57.07 70.88 85.77 47.18 1.59 1.22 0.82 0.28 7.47 13.13 46 E16_Aa NovelBoundary 0 131.28 0.00 7.66 15.62 24.62 7.89 6.14 61.04 17.77 1.40 20.43 24.31 28.57 82.88 117.68 115.10 85.27 0.00 4.80 0.00 0.00 9.37 24.16 47 ER16a ExonRegion 0 254.59 1.21 57.12 54.41 95.71 20.95 34.19 197.44 81.52 21.92 526.02 360.07 281.45 831.69 739.02 1071.84 630.75 10.74 11.13 1.78 4.77 72.50 76.11 48 E16a_E17a KnownJunction 0 317.76 5.79 68.09 54.21 59.51 9.88 40.89 230.96 87.85 27.48 530.71 361.02 339.10 728.77 627.61 716.91 675.55 6.59 18.07 0.00 15.14 64.11 72.64 49 ER17a ExonRegion 0 234.56 2.65 52.25 27.76 71.78 19.34 29.36 153.41 63.19 23.18 492.48 301.00 226.21 705.23 654.94 858.15 568.64 4.36 16.26 1.14 6.53 63.52 55.69 50 E17a_E18a KnownJunction 0 460.60 3.16 61.53 40.59 159.76 23.96 50.96 223.36 93.00 32.99 653.64 571.39 397.70 870.21 910.81 1405.10 763.07 6.88 9.22 2.56 2.35 87.26 110.55 51 Ix Intron 0 40.08 0.28 4.19 4.67 21.72 2.98 4.84 18.47 4.73 0.92 20.13 13.23 11.53 33.03 37.72 69.96 28.13 0.00 1.29 0.29 0.00 3.10 7.15 52 Ix_AR3 ActiveIntronRegion 0 53.36 0.06 5.51 4.46 25.23 4.29 6.17 19.85 5.75 0.98 25.70 12.06 13.18 33.06 41.76 81.13 34.64 0.00 1.07 0.00 0.00 2.71 7.66 53 Ix_AR1 ActiveIntronRegion 0 37.46 0.61 2.76 5.11 28.50 4.68 7.15 28.26 4.88 1.15 5.99 18.62 18.76 41.42 52.66 117.99 21.79 0.00 3.19 0.00 0.00 6.77 15.12 54 Ix Intron 0 53.49 0.25 4.28 5.00 35.48 3.35 9.34 17.00 5.21 1.14 6.29 13.32 15.71 29.38 34.00 64.36 24.49 0.53 2.42 0.45 0.47 3.80 10.18 55 Ix_SR1 SilentIntronRegion 0 56.79 0.33 4.11 4.91 43.62 3.76 10.47 15.62 5.05 1.33 5.15 12.82 14.75 31.10 33.24 71.72 24.88 0.60 3.26 0.61 0.27 3.84 10.71 56 E18_Aa NovelBoundary 0 111.95 0.00 3.19 5.69 24.36 0.00 0.00 28.14 8.62 1.45 5.05 18.91 6.82 23.37 45.49 48.79 17.11 0.00 0.00 0.00 0.00 0.00 4.01 57 ER18a ExonRegion 0 415.37 3.32 73.38 60.62 123.72 30.81 45.52 270.68 116.72 31.33 695.94 480.31 454.34 923.99 893.30 1373.97 800.07 11.02 17.64 2.67 6.74 89.14 101.38 58 E18a_E19a KnownJunction 0 351.62 9.14 67.68 42.72 230.22 36.17 75.12 239.50 105.79 23.83 521.92 528.77 453.87 790.63 817.98 936.34 587.84 2.57 7.53 6.01 0.00 89.46 63.25 59 ER19a ExonRegion 0 220.28 1.59 64.57 43.12 126.40 16.35 42.67 221.43 93.93 28.59 475.82 516.12 448.30 664.79 809.35 1034.17 541.88 7.67 9.96 2.27 3.90 65.38 73.69 60 E19a_E20a KnownJunction 1 391.03 3.35 67.00 78.01 102.55 14.31 45.71 216.75 93.11 19.15 368.20 588.34 500.94 705.70 1033.32 1576.59 427.40 13.64 4.33 3.13 0.00 74.15 127.62 61 ER20a ExonRegion 0 327.15 5.38 76.23 73.70 98.44 21.93 30.34 229.97 102.20 22.54 604.67 407.19 401.99 846.14 933.07 1109.43 618.05 8.86 16.60 2.22 5.98 64.98 74.81 62 E20a_E21a KnownJunction 0 3.63 0.00 1.60 4.00 0.00 0.00 0.00 0.00 2.86 0.00 16.06 6.30 13.15 43.97 33.87 50.07 15.52 0.00 0.00 0.00 0.00 0.00 0.00 63 E20a_E22a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.00 0.00 0.00 4.45 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 E20a_E23a KnownJunction 0 280.79 6.58 64.07 44.25 89.73 12.38 36.66 153.49 51.07 15.55 344.35 305.65 303.23 516.69 458.00 640.77 384.29 11.61 12.52 0.00 5.56 56.70 47.55 65 E20a_E23b KnownJunction 0 38.90 0.00 9.08 5.56 34.80 0.00 14.75 20.37 8.68 1.18 51.75 49.97 58.28 101.65 110.76 114.93 95.84 2.28 0.00 0.00 0.00 5.08 3.41 66 ER21a ExonRegion 0 20.78 0.00 2.87 5.65 6.08 0.00 0.05 7.35 6.43 0.05 20.25 13.09 21.48 53.06 60.56 43.43 41.67 0.00 0.00 0.00 0.00 1.87 3.17 67 E21a_E23a KnownJunction 0 20.89 0.00 0.00 0.00 0.00 0.00 0.00 3.61 6.86 0.00 4.74 0.00 14.93 22.25 8.90 18.80 8.60 0.00 0.00 0.00 0.00 3.12 0.00 68 E21b_E22a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 E21b_E23a KnownJunction 0 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.90 0.00 5.84 2.41 0.00 7.95 3.55 0.00 0.00 0.00 0.00 0.00 0.00 70 ER21b ExonRegion 0 4.88 0.00 0.00 0.52 0.00 0.00 0.00 0.13 1.14 0.00 11.15 0.33 7.94 23.49 15.40 17.60 9.14 0.00 0.00 0.00 0.00 0.00 1.58 71 ER22a ExonRegion 0 11.64 0.00 0.00 0.00 0.51 0.03 0.02 0.18 1.17 0.00 9.90 0.67 0.16 21.95 17.71 16.96 15.02 0.00 0.00 0.00 0.00 1.65 0.05 72 E22a_E23a KnownJunction 0 10.30 0.00 0.00 0.00 3.57 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 4.77 10.75 0.00 9.26 0.00 0.00 0.00 0.00 0.00 0.00 73 Ix_SR1 SilentIntronRegion 0 49.72 0.35 1.23 2.37 12.23 0.96 3.52 8.27 5.52 1.54 7.68 5.51 5.98 33.22 25.30 35.04 16.30 0.72 0.00 0.00 0.00 2.94 3.10 74 Ix_AR1 ActiveIntronRegion 0 70.47 0.00 0.99 3.65 7.37 1.54 2.92 9.66 4.95 1.35 10.48 4.16 1.96 20.33 22.17 54.28 20.77 0.52 0.89 0.00 0.00 2.61 4.65 75 ER23a ExonRegion 0 251.34 5.08 50.55 40.89 98.33 11.00 33.10 156.43 62.37 16.63 360.49 284.66 322.44 559.51 459.85 651.64 431.59 9.70 10.35 0.00 5.51 51.05 49.92 76 ER23b ExonRegion 0 299.03 2.32 55.29 57.53 125.89 22.97 48.39 233.55 89.55 17.20 450.37 328.21 305.41 567.17 477.81 868.36 499.69 13.86 15.09 0.00 3.41 63.80 57.54 77 E23_Da KnownBoundary 0 508.39 0.00 68.80 88.47 198.47 41.23 53.17 330.19 117.01 21.62 547.09 438.14 317.02 547.36 399.90 1166.70 557.46 12.93 13.27 0.00 7.60 104.40 77.85 78 E23a_E23c KnownJunction 0 21.71 0.00 1.24 1.66 0.00 0.00 2.08 9.20 0.00 0.00 5.11 0.00 0.00 0.00 0.00 4.36 12.34 0.00 0.00 0.00 0.00 2.27 0.00 79 ER23c ExonRegion 0 388.33 2.84 46.80 45.87 106.44 17.95 33.27 158.18 65.98 15.33 350.64 225.06 235.43 622.16 578.46 839.34 425.48 6.34 8.22 0.55 7.89 47.65 67.92 80 E23_Ac KnownBoundary 0 309.68 3.09 35.01 42.98 75.72 18.06 52.51 141.29 44.96 10.50 286.76 113.89 67.20 559.19 548.98 668.20 422.44 2.57 4.14 0.00 8.59 26.21 45.75 81 ER23d ExonRegion 0 502.55 4.11 72.99 73.64 140.91 22.69 33.35 218.45 71.54 18.91 336.37 150.86 142.57 581.03 696.76 837.81 398.13 6.15 11.19 1.52 2.73 58.99 61.04 82 ER24a ExonRegion 0 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.86 0.85 0.17 0.58 0.00 0.00 0.00 0.00 0.00 0.00