Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DERL2 Gene 0 78.47 54.26 36.59 39.49 69.97 58.19 48.04 48.97 44.25 49.93 70.17 70.79 71.61 80.98 101.03 76.02 66.31 36.85 15.94 42.45 36.12 59.83 42.02 2 158771 Transcript 0 217.88 119.31 93.46 88.23 152.83 135.05 119.02 97.48 80.06 110.70 225.16 220.08 245.09 262.77 305.01 235.39 202.37 104.74 36.35 82.51 115.72 155.58 116.22 3 IG8 Intergenic 0 3.03 8.12 2.34 2.14 8.06 23.90 10.27 2.91 2.63 6.69 11.21 1.67 2.39 25.68 15.08 13.21 7.20 11.56 3.36 9.76 4.48 2.67 6.42 4 IG8_AR1 ActiveIntergenicRegion 0 3.03 8.13 2.34 2.15 8.07 23.93 10.28 2.91 2.64 6.70 11.23 1.67 2.39 25.71 15.10 13.23 7.21 11.58 3.36 9.78 4.49 2.67 6.42 5 ER1a ExonRegion 1 269.10 136.75 25.72 21.87 101.14 110.88 99.71 35.78 23.63 41.42 100.06 11.77 12.28 116.36 160.37 140.21 133.08 77.17 20.72 34.43 91.02 147.22 93.74 6 E1a_E2a KnownJunction 0 58.97 22.89 17.68 12.15 11.80 10.96 7.60 18.57 13.48 21.03 19.43 5.85 18.34 24.43 25.84 18.63 13.37 19.48 0.00 4.79 20.63 3.12 3.76 7 I1_AR1 ActiveIntronRegion 0 8.48 6.13 6.58 5.12 7.26 13.46 5.47 6.54 7.05 6.52 10.52 4.98 6.65 10.21 6.11 11.35 11.82 9.36 1.59 9.91 7.42 3.43 5.41 8 I1_SR1 SilentIntronRegion 0 21.00 14.84 9.41 8.27 12.72 15.89 10.08 8.17 5.18 6.94 12.29 9.30 10.81 5.86 7.72 7.43 5.72 3.21 0.86 10.41 2.02 3.98 4.04 9 E2_Aa NovelBoundary 0 26.67 27.82 9.17 7.09 26.99 38.90 13.20 0.00 8.48 8.54 12.53 12.60 5.84 16.30 4.45 16.06 12.44 4.60 4.61 9.52 2.72 8.94 4.10 10 ER2a ExonRegion 1 81.68 45.42 35.07 34.67 48.33 102.86 31.78 63.53 52.57 67.37 235.20 50.90 65.02 99.47 104.36 62.05 179.10 39.17 10.91 51.74 129.35 53.29 23.14 11 E2a_E3a KnownJunction 1 112.76 57.23 84.24 86.20 96.10 149.52 60.72 131.19 106.65 142.85 502.60 149.60 146.74 243.10 310.90 137.31 524.73 77.68 22.31 139.91 246.06 134.10 57.71 12 E2a_E6a NovelJunction 0 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 1.39 0.00 15.00 0.00 6.82 0.00 4.45 0.00 18.33 0.00 3.58 0.00 0.00 0.00 0.00 13 E3_Aa NovelBoundary 1 14.22 3.29 5.00 1.23 18.42 12.55 0.00 10.02 6.63 11.04 4.90 0.00 33.44 4.24 0.00 11.79 4.49 0.00 0.00 9.14 0.00 9.06 0.00 14 ER3a ExonRegion 0 167.89 79.67 107.95 109.62 136.21 96.22 77.15 117.93 80.80 139.47 259.14 267.84 289.32 418.34 466.12 489.64 220.80 160.83 66.76 111.21 115.22 404.88 259.34 15 E3_Da NovelBoundary 1 3.48 2.57 4.88 1.70 8.66 0.00 4.06 0.00 1.68 3.04 0.00 18.16 40.26 2.47 9.27 6.66 0.00 9.41 0.00 0.00 3.09 5.94 4.01 16 E3a_E4a KnownJunction 1 203.07 99.39 141.09 122.26 152.55 102.95 108.02 110.65 72.89 120.31 194.84 486.91 448.18 218.91 283.08 344.70 90.79 147.24 43.30 89.80 66.78 150.45 200.52 17 E3a_E5a NovelJunction 0 3.56 9.60 6.53 3.36 67.83 4.43 14.71 2.18 20.75 6.98 18.06 12.60 0.00 6.89 5.07 0.00 4.39 4.97 0.00 14.57 0.00 28.29 3.50 18 I3 Intron 0 7.04 4.35 5.16 3.98 11.45 3.84 7.42 3.99 6.12 3.11 10.30 17.00 16.44 11.95 11.24 17.59 12.48 4.56 2.61 6.98 3.21 4.55 5.75 19 I3_AR1 ActiveIntronRegion 0 7.04 7.11 1.25 3.30 32.95 4.51 13.16 3.35 1.26 4.17 17.19 14.50 23.39 8.96 5.77 4.19 4.49 0.00 0.00 1.77 1.35 4.39 1.80 20 I3_AR2 ActiveIntronRegion 0 9.35 7.15 5.38 4.97 10.01 0.89 9.99 8.64 1.75 4.48 18.64 21.23 35.70 10.37 7.11 3.36 5.86 0.00 0.00 2.81 1.78 2.15 2.46 21 I3_SR1 SilentIntronRegion 0 14.97 4.21 4.90 4.09 2.68 1.83 6.62 5.80 1.24 6.14 8.97 23.50 30.82 6.96 13.47 6.58 5.19 1.72 0.00 6.84 2.20 5.06 2.94 22 I3_AR3 ActiveIntronRegion 0 8.97 5.11 9.18 4.84 14.45 4.12 7.34 2.88 7.61 4.04 10.58 35.32 18.94 10.51 9.94 14.33 19.25 3.75 3.73 9.93 2.57 6.03 7.90 23 I3_AR4 ActiveIntronRegion 0 4.23 6.77 3.80 6.03 2.24 4.81 4.36 2.64 5.22 2.46 4.02 15.33 2.46 12.46 11.51 15.40 15.10 6.63 0.52 10.12 5.17 7.99 12.56 24 I3_AR5 ActiveIntronRegion 0 7.69 5.11 2.45 3.49 4.57 6.44 9.36 2.87 4.82 1.96 9.57 6.97 0.00 8.95 5.59 16.46 19.81 8.70 3.11 2.65 5.43 3.15 12.96 25 I3_SR2 SilentIntronRegion 0 5.99 3.11 3.95 3.39 8.62 3.54 6.72 4.60 6.59 2.49 9.49 8.29 15.47 13.54 13.29 22.67 9.83 5.45 2.80 6.39 3.56 3.66 4.22 26 E4_Aa NovelBoundary 1 10.67 3.35 12.45 7.36 15.79 0.00 1.81 11.58 3.65 2.44 19.48 18.91 71.59 10.60 39.06 15.89 4.39 10.65 3.58 12.02 0.00 4.71 14.60 27 ER4a ExonRegion 0 159.21 140.27 111.47 109.58 292.80 230.63 216.78 104.50 92.46 141.59 272.62 275.80 316.78 245.83 294.11 259.65 225.02 113.16 36.90 94.43 118.65 193.43 112.09 28 E4_Da NovelBoundary 0 52.75 18.75 29.77 28.63 39.30 15.33 54.89 27.40 22.31 20.66 49.64 56.42 79.22 31.73 51.67 48.28 42.64 18.28 11.95 35.54 19.58 30.43 12.63 29 E4a_E5a KnownJunction 0 154.99 273.70 116.23 121.60 148.90 191.20 253.01 95.46 71.87 142.15 179.15 238.13 267.51 259.11 359.23 232.08 159.23 80.75 34.45 67.30 145.05 176.35 112.08 30 I4 Intron 0 44.96 12.80 8.36 11.48 26.03 14.56 20.27 19.90 16.72 14.91 44.38 67.55 72.68 31.78 28.42 35.08 39.90 8.69 7.52 16.89 7.41 25.34 16.80 31 I4_AR1 ActiveIntronRegion 0 44.59 12.13 9.56 11.16 24.02 15.15 20.18 21.16 16.40 11.44 48.57 75.96 80.27 37.72 33.87 43.67 39.51 11.27 10.31 20.09 10.08 21.43 18.34 32 I4_AR2 ActiveIntronRegion 0 38.37 6.43 9.80 10.93 20.40 10.61 17.36 25.13 17.84 17.43 38.56 73.67 58.43 25.21 13.36 27.38 28.25 4.30 3.29 14.89 4.80 24.83 13.05 33 I4_AR3 ActiveIntronRegion 1 49.17 19.28 5.79 9.48 24.92 15.75 24.54 21.00 18.29 21.71 46.97 47.39 65.60 29.95 21.98 19.46 45.04 4.53 4.76 12.71 0.66 36.68 14.52 34 I4_SR1 SilentIntronRegion 0 49.92 14.82 7.25 14.19 34.74 15.43 21.49 17.33 17.95 19.42 40.65 63.59 72.06 25.93 27.28 30.43 44.71 7.56 4.74 14.67 6.45 31.09 17.48 35 E5_Aa NovelBoundary 1 96.54 21.38 7.21 18.61 24.79 9.77 20.14 22.80 21.15 9.40 28.90 50.72 69.31 13.83 54.52 26.49 21.32 21.64 8.38 8.88 11.68 24.37 23.47 36 I4_AR4 ActiveIntronRegion 1 19.52 4.75 3.95 1.36 5.95 5.30 5.00 2.30 3.71 5.73 20.62 16.36 18.76 9.56 16.76 6.93 28.61 1.85 6.37 2.13 1.71 7.87 3.92 37 I4_SR2 SilentIntronRegion 0 7.62 1.22 0.74 1.23 2.68 2.02 3.84 0.69 1.98 3.10 9.28 4.33 6.10 4.22 6.09 2.38 16.83 1.11 5.73 0.64 0.00 0.42 2.94 38 ER5a ExonRegion 0 352.31 182.44 124.37 136.79 177.62 188.77 126.38 135.72 108.53 162.04 280.53 320.82 380.30 373.20 376.90 312.39 277.33 147.81 58.69 110.95 156.27 206.18 162.47 39 E5_Da NovelBoundary 1 22.89 5.33 9.64 7.86 7.81 0.00 21.68 16.22 5.90 5.67 4.63 0.00 39.45 7.18 8.90 7.95 4.39 11.32 8.75 0.00 2.66 11.27 19.97 40 E5a_E6a KnownJunction 1 412.89 143.33 125.25 98.39 258.91 172.12 182.70 133.74 112.93 117.87 241.43 322.15 501.75 464.18 613.51 352.04 257.60 164.11 57.98 97.99 119.48 161.04 142.21 41 I5 Intron 0 33.46 13.71 9.62 8.13 11.84 11.98 6.98 10.31 8.92 14.05 11.00 13.74 19.24 15.32 13.20 8.77 3.48 0.97 3.36 5.38 2.32 11.86 5.57 42 I5_SR1 SilentIntronRegion 0 23.84 15.31 8.31 8.41 10.05 12.84 8.24 11.06 8.14 15.46 10.70 15.39 24.56 18.77 11.39 8.27 5.85 1.28 4.43 5.13 4.09 12.54 7.29 43 I5_AR1 ActiveIntronRegion 0 42.78 12.77 11.05 8.15 13.76 11.62 6.10 9.95 9.87 13.28 11.58 12.75 15.28 12.84 15.14 9.47 1.55 0.74 2.54 5.77 0.88 11.61 4.20 44 E6_Aa NovelBoundary 1 23.71 12.23 15.14 10.39 7.22 9.65 4.42 8.09 5.64 15.53 2.37 33.01 20.13 11.65 8.90 7.69 4.77 0.00 0.00 13.87 2.53 10.96 11.18 45 ER6a ExonRegion 0 378.30 149.03 136.29 128.96 241.85 193.68 167.88 146.31 128.29 152.10 287.58 347.21 304.85 439.99 445.04 360.38 260.15 166.68 72.60 113.14 140.80 195.81 195.88 46 E6_Da NovelBoundary 0 9.41 3.09 0.00 2.06 16.64 7.95 15.72 5.09 10.76 16.17 5.05 18.46 11.36 4.59 0.00 16.92 9.16 11.52 4.52 17.07 6.30 2.88 7.77 47 E6a_E7a KnownJunction 0 437.78 182.27 163.51 135.58 269.19 166.84 181.82 134.85 139.50 154.11 315.24 340.91 394.94 470.84 464.06 311.37 252.36 146.54 37.55 122.78 136.22 162.70 124.80 48 I6 Intron 0 17.91 8.92 5.78 6.77 17.31 8.62 8.34 9.76 8.55 10.08 4.30 12.58 23.07 5.09 8.34 8.13 8.93 4.90 2.27 6.06 3.64 4.51 3.10 49 I6_SR2 SilentIntronRegion 0 29.46 10.99 9.25 9.82 21.35 12.71 10.84 14.36 11.65 13.73 5.18 13.38 34.40 5.72 11.37 9.24 6.73 4.63 1.85 5.83 2.41 6.52 2.55 50 I6_AR2 ActiveIntronRegion 0 27.82 6.88 3.47 3.96 4.40 5.33 1.17 2.59 3.91 0.90 8.74 16.18 5.47 2.67 1.93 8.56 3.30 2.38 0.00 1.93 2.94 0.00 0.00 51 E7_Aa NovelBoundary 0 53.64 14.93 22.32 18.25 70.29 2.73 10.82 16.27 17.94 29.68 9.69 0.00 13.64 0.00 19.41 31.19 7.85 5.84 16.57 2.88 8.96 5.08 3.24 52 ER7a ExonRegion 0 43.49 38.60 26.17 29.31 51.37 39.05 33.66 39.03 37.19 36.82 39.27 43.13 40.08 42.30 61.59 39.65 37.28 21.01 10.39 34.19 18.88 33.91 23.16