Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CAMKK1 Gene 0 14.07 41.51 58.45 50.17 12.15 106.59 12.07 49.44 52.63 34.83 1.30 0.67 0.57 1.99 1.89 2.77 1.88 35.84 25.60 31.17 85.28 72.04 57.10 2 158166 Transcript 0 1.40 5.27 7.33 3.76 3.09 9.14 2.79 9.97 7.71 3.15 0.39 0.00 0.00 0.29 0.28 0.40 0.45 5.68 7.38 5.35 10.31 8.25 11.01 3 348335 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 381771 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 381769 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 0 3.28 6.02 2.76 1.26 1.44 28.32 3.09 5.19 3.60 6.10 0.19 0.00 0.00 0.00 0.00 2.57 0.00 5.37 3.55 3.21 15.47 12.24 13.64 8 E1a_E3a KnownJunction 0 3.11 8.55 9.91 5.23 0.00 38.84 7.55 20.91 11.55 21.01 2.16 0.00 0.00 0.00 0.00 3.50 0.00 16.17 0.00 8.44 27.37 26.02 43.28 9 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 10 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 11 ER3a ExonRegion 0 3.15 12.07 29.83 19.47 4.93 59.86 6.75 31.15 37.47 27.28 1.91 0.55 0.00 1.68 3.66 3.85 0.00 29.88 19.57 22.67 76.10 50.51 49.46 12 E3a_E4a KnownJunction 0 9.78 35.06 39.80 19.01 16.30 41.45 5.87 15.40 54.92 25.84 0.00 0.00 0.00 2.47 0.00 0.00 0.00 18.74 12.71 38.41 97.61 17.57 19.55 13 ER4a ExonRegion 0 6.57 30.97 40.05 20.70 10.15 48.75 9.32 27.69 62.78 29.17 0.00 0.00 0.00 1.83 3.20 0.74 1.38 57.67 23.09 29.83 80.11 49.22 45.40 14 E4a_E5a KnownJunction 0 6.30 28.61 46.78 26.54 3.90 48.95 14.22 42.76 56.39 32.85 2.58 0.00 0.00 5.36 0.00 2.99 4.77 69.14 55.15 19.81 76.30 74.83 81.35 15 ER5a ExonRegion 0 8.74 26.74 42.50 32.03 4.16 101.91 8.70 50.25 68.21 45.26 0.00 0.00 0.00 2.59 6.55 5.23 1.89 53.17 37.16 29.83 115.98 80.25 81.85 16 E5a_E6a KnownJunction 0 27.78 19.67 48.46 40.45 7.47 147.47 11.48 51.55 90.94 39.30 0.00 0.00 0.00 2.35 4.45 11.62 8.79 51.36 6.96 41.67 127.26 94.05 63.17 17 ER6a ExonRegion 0 11.19 28.78 48.43 42.25 16.57 114.12 13.70 48.36 87.98 43.19 0.00 0.00 0.00 2.53 6.19 5.26 5.27 48.43 17.64 57.69 141.12 86.91 81.89 18 E6a_E7a KnownJunction 0 14.74 37.82 45.98 51.18 38.03 119.82 24.64 46.09 66.98 39.92 0.00 0.00 0.00 2.18 6.30 0.00 8.88 32.83 16.85 60.53 125.96 74.46 93.47 19 ER7a ExonRegion 0 2.01 27.92 59.93 43.40 11.98 81.00 11.78 58.50 72.16 36.94 1.47 0.00 0.00 1.32 2.04 1.11 5.64 61.82 38.32 39.81 112.29 94.69 88.56 20 E7a_E8a KnownJunction 0 2.96 45.72 77.41 54.27 16.38 106.02 20.27 63.58 90.91 51.84 0.00 0.00 0.00 7.06 0.00 3.16 0.00 72.09 42.73 71.27 119.85 120.69 89.89 21 ER8a ExonRegion 0 11.67 35.56 58.92 60.85 7.16 85.54 14.60 62.97 88.49 46.31 0.00 4.33 0.00 2.59 0.94 0.48 5.00 58.43 27.89 56.70 107.09 99.22 68.97 22 E8_Da NovelBoundary 0 0.00 0.00 11.80 14.35 0.00 5.00 0.00 6.37 4.77 6.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.27 31.91 21.92 17.24 9.00 7.68 23 E8a_E9a KnownJunction 0 10.45 12.30 11.77 24.17 0.00 15.50 2.08 9.28 10.24 15.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.19 14.12 8.31 18.66 28.78 4.10 24 E8a_E10a KnownJunction 0 7.48 44.66 34.09 34.19 3.57 52.19 15.19 43.21 62.41 16.31 0.00 0.00 0.00 0.00 0.00 0.00 12.16 32.17 21.27 36.24 77.59 75.07 43.45 25 E9_Aa NovelBoundary 0 17.26 5.99 10.76 21.34 4.33 34.92 8.17 10.19 14.47 7.84 0.00 11.55 0.00 0.00 0.00 0.00 0.00 11.03 3.95 25.31 19.40 10.65 19.38 26 ER9a ExonRegion 0 3.77 11.92 14.73 23.83 3.73 42.24 7.40 6.61 7.80 12.13 1.73 0.00 0.00 0.00 0.00 0.00 0.00 7.21 13.94 8.92 29.25 27.40 12.39 27 E9_Da NovelBoundary 0 3.48 13.22 7.57 17.88 4.33 41.91 3.31 9.90 6.28 4.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.21 4.80 5.37 7.97 2.51 17.84 28 E9a_E10a KnownJunction 0 0.00 8.75 4.64 13.52 6.79 26.92 1.90 4.76 5.06 10.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.94 17.51 2.75 8.34 17.21 11.87 29 ER10a ExonRegion 0 4.43 50.65 39.04 39.21 7.78 77.35 14.20 54.76 65.74 28.88 0.18 0.98 0.00 0.15 2.90 0.00 4.50 36.37 25.05 45.55 98.27 72.92 68.21 30 Ix_AR1 ActiveIntronRegion 0 4.56 8.40 7.53 8.39 4.32 17.12 7.37 4.63 5.62 5.52 0.00 0.64 0.84 0.48 0.00 1.07 0.59 3.47 2.86 3.06 5.52 14.58 4.75 31 ER11a ExonRegion 0 4.45 48.78 65.83 46.49 20.38 158.20 18.70 63.88 67.11 36.12 3.28 2.04 0.26 1.50 5.64 2.67 2.26 50.53 39.01 49.01 108.40 95.84 99.22 32 E11a_E12a KnownJunction 0 9.33 64.66 92.07 54.70 52.04 190.12 37.85 66.21 77.83 58.99 0.00 0.00 0.00 0.00 4.45 4.36 0.00 76.15 72.38 58.16 124.23 134.96 82.89 33 ER12a ExonRegion 0 11.02 51.26 83.51 66.75 22.29 157.64 16.96 67.30 76.21 49.72 4.04 0.00 0.87 1.85 4.00 4.15 2.03 53.55 38.96 41.80 128.42 111.05 84.60 34 E12_Da NovelBoundary 0 3.78 19.14 2.84 8.62 3.99 7.78 4.33 0.00 4.80 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.78 15.91 0.00 20.08 8.57 3.84 35 E12a_E13a KnownJunction 0 7.41 46.04 57.92 50.51 28.35 136.85 24.69 67.57 71.87 62.59 4.95 0.00 0.00 2.47 0.00 6.49 4.77 44.73 35.20 31.96 103.29 88.60 57.02 36 Ix Intron 0 3.38 9.65 6.26 4.77 4.02 10.08 1.80 5.81 5.36 3.45 0.18 0.17 0.73 0.06 0.19 1.26 0.16 10.87 9.57 4.20 21.73 10.27 5.52 37 Ix_AR3 ActiveIntronRegion 0 3.46 9.80 5.55 5.21 6.67 17.39 2.41 4.88 6.54 3.15 0.00 0.00 0.44 0.00 0.27 2.08 0.38 15.10 10.65 4.09 22.75 10.91 6.66 38 Ix_AR2 ActiveIntronRegion 0 4.68 13.77 8.08 5.61 2.96 7.10 2.20 9.26 4.83 4.25 0.53 0.49 1.60 0.18 0.00 0.82 0.00 9.39 11.89 5.88 25.57 13.25 6.90 39 E13_Aa NovelBoundary 0 3.78 12.23 20.37 5.56 0.00 24.64 0.00 11.46 6.74 11.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.47 8.28 2.81 21.87 17.39 12.63 40 ER13a ExonRegion 0 10.46 60.44 71.39 71.10 15.51 140.79 20.62 83.32 78.20 70.77 3.58 3.29 0.00 3.13 3.01 4.62 4.03 50.40 27.49 28.05 109.08 103.10 77.71 41 E13a_E14a KnownJunction 0 7.41 71.83 96.98 104.55 32.68 142.82 24.78 94.72 76.45 75.75 4.79 6.15 0.00 0.00 10.75 4.02 4.30 47.05 17.69 44.04 101.56 114.20 104.74 42 ER14a ExonRegion 0 13.64 78.71 102.14 76.25 17.03 233.93 24.31 77.97 82.75 75.17 4.86 2.16 0.00 0.61 1.22 2.69 2.94 58.15 46.88 54.83 139.76 116.28 63.14 43 E14_Da NovelBoundary 0 3.11 0.00 9.82 19.91 0.00 46.00 1.99 20.25 9.23 14.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.95 0.00 8.50 6.18 22.90 40.63 44 E14a_E15a KnownJunction 0 35.71 63.94 97.90 85.07 8.23 129.87 14.13 58.28 77.83 66.08 0.00 6.30 0.00 2.30 0.00 0.00 0.00 49.91 29.84 41.67 129.24 81.20 50.19 45 Ix Intron 0 3.17 5.33 11.91 21.05 3.84 25.99 5.41 10.21 12.18 7.47 0.30 0.22 1.21 0.92 0.50 1.30 0.00 11.47 5.67 8.63 13.75 21.53 22.82 46 Ix_SR1 SilentIntronRegion 0 3.70 5.46 11.59 20.34 4.14 25.90 5.33 10.17 13.48 7.93 0.08 0.29 1.41 1.10 0.57 1.45 0.00 11.81 6.35 9.27 14.61 21.63 22.83 47 Ix_AR1 ActiveIntronRegion 0 1.42 4.93 13.02 23.50 2.88 26.40 5.70 10.40 7.93 5.98 1.04 0.00 0.52 0.31 0.28 0.80 0.00 10.38 3.44 6.59 10.97 21.31 22.90 48 E15_Aa NovelBoundary 0 7.56 15.66 17.83 31.63 3.90 15.56 15.06 7.31 12.73 11.58 0.00 0.00 6.82 0.00 0.00 0.00 0.00 10.24 0.00 9.40 19.40 14.88 34.23 49 ER15a ExonRegion 0 18.83 66.32 70.96 71.18 11.22 196.17 15.81 60.16 81.92 58.22 4.63 0.74 0.00 5.09 0.00 4.73 0.75 56.52 52.52 41.17 148.53 101.95 59.53 50 E15_Da NovelBoundary 0 10.15 8.55 32.23 41.65 8.66 26.01 4.50 10.72 23.70 16.44 0.00 0.00 0.00 0.00 0.00 3.59 0.00 21.47 4.52 17.45 30.58 22.78 33.04 51 E15a_E16a KnownJunction 0 11.26 47.10 81.34 78.91 16.38 169.62 16.25 56.19 83.25 44.00 4.16 0.00 0.00 0.00 0.00 8.12 4.77 41.16 51.39 45.64 137.45 78.32 43.71 52 Ix Intron 0 6.42 7.85 16.12 19.60 3.69 22.75 3.28 7.10 6.60 6.60 0.53 0.00 0.00 0.68 0.56 0.82 0.00 9.11 7.90 8.80 18.21 19.53 23.48 53 Ix_AR1 ActiveIntronRegion 0 6.49 7.93 16.29 19.81 3.73 23.00 3.32 7.18 6.67 6.67 0.54 0.00 0.00 0.69 0.57 0.83 0.00 9.20 7.99 8.89 18.41 19.74 23.72 54 E16_Aa NovelBoundary 0 0.00 10.06 19.13 25.90 0.00 70.47 10.07 5.42 14.41 12.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.14 8.47 5.24 21.99 13.23 30.82 55 ER16a ExonRegion 0 9.88 44.90 91.78 73.41 10.77 133.91 10.59 53.19 74.13 53.37 2.34 2.82 0.00 2.59 0.00 4.40 2.10 63.50 32.50 44.65 127.46 101.87 73.64 56 E16_Da NovelBoundary 0 6.96 0.00 18.07 12.89 0.00 8.35 4.50 20.29 13.89 9.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.88 3.67 9.52 24.59 11.21 27.49 57 E16a_E17a KnownJunction 0 13.41 44.20 115.08 68.86 0.00 150.31 21.68 78.82 85.27 65.95 0.00 0.00 0.00 7.06 0.00 4.36 0.00 75.86 27.39 40.01 120.47 126.02 47.63 58 Ix Intron 0 3.33 4.47 9.76 7.15 1.66 10.56 2.19 7.15 5.79 4.89 0.16 0.30 0.86 0.22 0.46 0.49 0.14 6.62 3.30 5.38 15.52 11.22 11.68 59 Ix_AR1 ActiveIntronRegion 0 2.80 3.58 3.21 4.91 1.18 10.88 2.62 7.93 2.83 6.39 0.00 0.00 0.85 0.00 0.00 1.31 0.00 5.25 2.10 3.27 14.04 9.62 16.78 60 ER17a ExonRegion 0 10.85 48.92 88.57 64.45 12.56 130.18 11.79 61.84 78.29 49.52 1.34 0.00 0.00 3.22 0.00 3.94 4.19 50.80 38.22 39.10 122.75 89.59 76.35 61 E17_Da KnownBoundary 0 3.26 5.99 7.69 6.06 0.00 22.66 0.00 15.44 7.49 4.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.76 0.00 0.00 6.30 7.96 18.10 62 E17a_E18a KnownJunction 0 12.89 65.98 76.46 59.47 25.72 196.82 15.81 45.51 65.36 44.38 2.68 0.00 0.00 0.00 0.00 3.50 4.77 35.24 33.70 26.91 105.70 98.95 53.35 63 ER17b ExonRegion 0 1.40 5.27 7.33 3.76 3.09 9.14 2.79 9.97 7.71 3.15 0.39 0.00 0.00 0.29 0.28 0.40 0.45 5.68 7.38 5.35 10.31 8.25 11.01 64 E17_Db NovelBoundary 0 3.78 0.00 6.39 6.16 0.00 11.24 4.24 11.62 20.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.91 4.71 2.62 7.85 3.12 7.85 65 E18_Aa NovelBoundary 0 3.56 0.00 17.98 3.83 0.00 29.13 6.76 6.28 13.11 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.17 8.38 0.00 11.68 8.21 7.26 66 ER18a ExonRegion 0 25.30 63.39 83.58 75.72 17.35 148.66 16.37 68.71 67.32 44.83 0.94 0.84 1.21 2.85 2.06 3.40 2.45 42.39 30.49 40.38 105.52 95.33 71.93 67 ER18b ExonRegion 0 9.00 22.24 4.37 6.90 1.51 22.81 8.19 1.84 1.78 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 4.12 6.75 5.08 13.58