Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GAS8 Gene 0 23.18 50.21 96.30 39.27 37.40 48.80 42.07 80.16 70.46 96.51 35.45 19.98 30.45 71.69 46.05 69.11 35.63 120.97 71.92 81.96 52.25 35.02 46.59 2 268699 Transcript 0 24.97 62.15 93.51 39.85 50.84 54.69 51.14 73.27 66.41 90.34 44.91 33.14 47.81 91.91 49.68 86.41 48.87 136.72 89.24 94.23 60.07 34.95 62.31 3 IG8 Intergenic 0 3.27 17.69 14.45 6.05 15.47 16.38 15.31 24.36 17.14 18.71 3.05 2.23 8.46 6.03 3.14 12.24 5.40 42.61 17.39 38.76 5.79 1.89 4.20 4 IG8_SR1 SilentIntergenicRegion 0 4.12 25.74 17.03 10.24 19.82 25.75 19.89 30.84 19.37 25.36 3.17 4.66 10.79 8.28 4.14 19.30 7.03 49.14 22.04 45.32 5.19 3.60 2.95 5 IG8_AR2 ActiveIntergenicRegion 0 8.00 28.45 20.44 9.49 37.85 26.63 24.35 42.64 31.77 38.04 5.80 2.80 5.66 8.36 2.23 16.27 5.39 54.58 32.75 44.03 9.51 1.25 3.80 6 IG8_SR2 SilentIntergenicRegion 0 3.46 14.46 11.98 5.01 12.09 13.34 13.16 22.67 16.84 15.21 3.41 0.79 8.28 5.00 3.25 11.16 5.07 46.20 16.56 39.76 7.05 1.63 5.91 7 IG8_AR3 ActiveIntergenicRegion 0 1.28 12.51 15.34 2.57 12.59 9.34 12.60 17.55 13.27 13.96 1.97 1.81 7.15 4.91 2.18 5.71 4.32 29.42 11.50 30.88 4.08 0.53 3.10 8 ER1a ExonRegion 0 6.18 8.75 4.92 1.08 2.48 14.16 6.22 4.52 5.35 7.75 7.22 0.00 1.58 11.47 7.59 19.69 6.07 13.73 31.14 11.51 7.72 6.97 22.95 9 E1a_E2a KnownJunction 1 49.19 44.73 26.17 8.19 18.42 66.50 44.60 14.38 21.56 32.42 28.95 0.00 5.84 40.32 54.52 115.10 23.09 42.24 191.72 36.24 51.52 43.60 149.13 10 I1 Intron 0 1.15 5.08 10.53 3.77 8.48 7.13 6.23 12.69 10.12 11.26 2.15 1.10 2.94 3.49 3.28 6.48 4.58 25.77 14.19 16.17 3.27 1.39 4.94 11 I1_SR1 SilentIntronRegion 0 1.15 5.09 10.54 3.77 8.49 7.13 6.23 12.70 10.13 11.27 2.16 1.10 2.95 3.50 3.28 6.49 4.58 25.79 14.21 16.19 3.28 1.39 4.95 12 E2_Aa NovelBoundary 0 6.30 16.71 20.46 12.05 9.76 28.22 27.82 24.69 24.31 24.15 2.68 0.00 6.01 12.77 4.45 8.20 9.54 57.99 37.18 34.32 7.78 5.51 16.30 13 ER2a ExonRegion 1 14.23 14.24 32.04 7.96 16.73 29.34 30.91 29.11 24.36 30.10 24.37 2.14 4.80 31.27 25.24 39.97 29.33 44.96 89.15 45.66 29.53 12.19 46.78 14 E2_Da NovelBoundary 0 7.56 10.06 15.85 3.40 14.26 14.31 18.90 8.34 6.19 9.56 2.53 0.00 6.82 2.35 8.90 0.00 4.49 20.44 4.80 18.79 5.56 0.00 13.06 15 E2a_E3a KnownJunction 0 6.89 3.35 12.77 3.30 0.00 4.60 1.99 12.73 6.57 14.64 16.37 0.00 6.01 17.01 4.45 15.38 12.44 17.70 12.33 6.07 3.15 2.33 8.02 16 I2 Intron 0 2.26 12.09 12.15 9.66 18.29 6.43 14.32 23.12 19.36 16.66 3.44 4.22 5.40 7.74 5.21 17.14 7.46 27.57 24.80 27.69 6.55 4.58 10.65 17 I2_AR1 ActiveIntronRegion 0 1.58 7.09 12.42 5.11 11.90 2.40 8.82 12.93 12.07 12.43 1.81 0.51 1.44 6.12 3.74 17.58 5.77 29.33 30.00 16.09 4.12 4.10 13.94 18 I2_SR1 SilentIntronRegion 0 2.59 14.44 12.05 11.80 21.31 8.33 16.92 27.92 22.81 18.66 4.22 5.97 7.25 8.51 5.91 16.96 8.26 26.80 22.42 33.16 7.70 4.82 9.13 19 I2 Intron 0 7.06 30.31 14.60 8.20 19.73 19.93 17.06 22.99 15.58 18.84 3.75 3.38 8.59 8.17 11.49 11.54 6.41 24.97 17.56 33.36 9.41 6.95 7.75 20 I2_SR1 SilentIntronRegion 0 5.59 22.18 9.64 5.85 15.20 13.23 15.02 16.05 10.00 12.85 2.56 2.04 4.96 5.43 8.57 11.16 4.57 14.91 13.06 22.86 6.09 5.91 6.15 21 I2_AR1 ActiveIntronRegion 0 10.06 46.78 24.64 12.95 28.93 33.46 21.23 37.06 26.86 30.95 6.14 6.10 15.92 13.72 17.39 12.35 10.11 45.29 26.67 54.61 16.11 9.09 10.99 22 E3_Aa NovelBoundary 0 17.19 42.49 28.71 17.61 35.06 5.56 4.37 39.35 29.54 46.63 9.90 6.30 21.10 11.65 4.45 31.02 14.21 64.50 39.81 56.31 13.65 5.14 16.22 23 ER3a ExonRegion 0 11.75 41.38 69.64 29.81 50.15 53.20 46.93 61.81 59.44 89.77 42.10 33.04 55.85 76.22 52.68 71.36 44.33 119.79 79.42 94.78 69.48 29.48 60.99 24 E3a_E4a KnownJunction 1 22.08 68.74 84.95 54.31 85.74 50.03 48.67 87.90 93.81 130.76 32.38 70.37 89.60 110.19 37.46 109.12 55.91 181.77 122.83 138.70 93.35 37.78 49.51 25 ER4a ExonRegion 0 20.37 63.77 103.69 49.22 59.19 64.17 54.19 104.89 93.89 118.77 68.45 46.79 95.34 114.30 68.14 112.60 57.74 180.00 113.81 138.48 87.65 45.23 72.99 26 E4a_E5a KnownJunction 1 44.08 52.56 79.65 62.13 29.97 31.29 39.44 81.70 62.44 106.21 48.43 48.62 175.15 114.55 66.75 141.84 38.80 163.33 100.99 128.60 70.30 24.25 54.21 27 E4a_E6a NovelJunction 1 7.26 12.17 57.80 17.25 15.45 16.41 23.01 24.77 27.66 28.04 7.84 18.61 28.41 16.66 18.67 18.88 20.76 62.30 15.81 42.63 25.08 22.47 32.95 28 ER5a ExonRegion 1 25.09 66.78 91.15 52.93 69.47 53.71 49.18 85.64 57.35 106.50 64.42 41.56 110.94 123.96 48.85 149.25 68.72 147.82 102.39 118.84 74.81 35.12 72.35 29 E5_Da NovelBoundary 0 12.89 5.53 11.97 5.79 4.24 0.00 1.85 10.35 8.71 22.19 2.21 5.40 26.62 19.31 4.45 6.58 4.49 33.91 27.20 20.01 2.35 10.59 6.74 30 E5a_E6a KnownJunction 1 30.52 97.81 102.39 44.38 103.40 71.89 87.97 87.32 54.60 113.89 71.39 48.92 90.90 137.91 31.89 107.58 86.11 114.66 113.70 139.08 59.12 41.39 54.29 31 I5_AR1 ActiveIntronRegion 0 0.00 10.70 5.78 3.34 9.81 12.71 7.12 5.23 7.15 15.78 6.77 0.00 18.09 8.20 10.29 6.23 14.07 15.13 14.33 13.53 1.94 4.86 5.87 32 I5_AR2 ActiveIntronRegion 0 3.17 12.84 3.54 5.46 5.38 1.58 8.79 6.85 11.03 19.23 2.63 3.01 11.40 12.88 8.39 8.95 6.12 12.93 23.95 17.25 2.51 7.91 7.40 33 E6_Aa NovelBoundary 0 0.00 0.00 9.61 5.83 23.09 0.00 8.13 3.82 4.31 2.79 0.00 0.00 0.00 7.71 0.00 7.60 0.00 10.69 7.53 5.31 2.47 3.12 3.41 34 ER6a ExonRegion 0 20.76 80.48 118.09 63.99 65.30 84.92 69.50 96.28 86.57 113.49 53.15 51.32 63.68 129.46 60.76 95.17 77.46 163.07 101.75 139.68 72.81 42.68 74.47 35 E6_Da NovelBoundary 1 0.00 3.03 7.84 3.33 12.14 5.79 9.41 13.80 6.94 8.65 2.42 12.60 26.78 21.78 22.87 16.66 9.07 18.99 16.57 10.67 14.52 10.90 0.00 36 E6a_E7a KnownJunction 0 24.52 134.45 135.09 50.24 83.79 28.90 73.44 96.61 71.79 99.79 51.80 49.67 39.61 142.09 52.17 75.02 55.73 151.60 84.90 111.15 78.89 25.78 78.19 37 E7_Aa NovelBoundary 0 18.37 9.67 9.73 1.56 4.33 31.40 3.67 21.56 17.82 21.62 4.32 0.00 0.00 19.13 6.30 13.76 8.32 19.98 12.71 35.09 19.15 13.96 11.95 38 ER7a ExonRegion 0 32.06 86.06 137.91 47.57 63.84 61.43 54.93 84.92 93.02 116.85 54.12 38.76 43.33 127.62 64.52 92.97 54.52 187.83 71.23 115.91 73.44 42.60 61.56 39 E7_Da NovelBoundary 0 2.96 13.42 1.27 5.09 20.46 26.69 15.85 8.50 7.32 10.56 0.00 0.00 0.00 4.30 0.00 25.21 4.77 22.63 16.28 17.83 18.90 11.45 11.78 40 E7a_E8a KnownJunction 0 48.01 97.15 131.93 53.74 64.09 98.07 86.74 105.07 109.40 122.09 43.12 31.66 33.76 136.32 65.15 84.93 64.98 183.72 54.31 116.58 55.04 35.58 75.38 41 I7 Intron 0 3.58 8.88 7.98 5.15 8.67 6.46 10.45 12.34 10.37 11.08 3.81 1.11 4.35 9.37 4.88 11.31 5.12 15.65 17.50 11.09 13.04 6.16 14.07 42 I7_SR1 SilentIntronRegion 0 3.57 9.17 8.28 5.33 8.99 6.74 10.83 12.77 10.78 11.47 3.95 1.16 4.54 9.72 5.09 11.78 5.34 16.25 18.13 11.39 13.51 6.42 14.56 43 E8_Aa NovelBoundary 0 0.00 24.93 18.15 9.79 22.92 7.95 14.09 20.54 15.68 12.22 6.90 0.00 12.17 13.13 5.44 15.72 0.00 32.71 24.66 20.45 11.86 0.00 19.21 44 ER8a ExonRegion 0 40.38 74.24 116.89 36.37 59.14 72.64 74.66 72.18 83.05 103.89 49.70 43.29 39.35 125.64 69.10 89.20 65.75 177.04 81.76 119.69 77.38 34.17 54.88 45 E8_Da NovelBoundary 0 3.78 20.46 24.72 10.59 16.81 8.57 16.16 22.26 19.76 35.78 17.27 12.30 6.82 16.78 10.63 26.92 13.65 35.86 17.69 31.00 10.93 3.12 29.28 46 E8a_E9a KnownJunction 0 27.49 73.01 132.31 29.90 65.11 76.55 45.71 65.51 76.68 98.80 58.91 12.60 27.11 80.46 51.05 63.06 47.59 186.25 77.74 72.16 54.30 38.33 52.41 47 I8 Intron 0 3.95 15.08 14.75 13.38 18.29 20.29 18.76 19.95 24.40 43.55 6.89 4.14 11.59 13.65 9.52 21.55 7.80 26.64 26.92 29.35 17.79 12.78 22.14 48 I8_AR1 ActiveIntronRegion 0 3.82 10.54 10.19 10.26 9.31 14.26 17.11 21.81 21.61 35.35 7.42 1.27 6.49 12.46 6.12 19.78 4.55 25.63 19.77 34.38 12.65 8.36 20.16 49 I8_SR1 SilentIntronRegion 0 3.94 16.75 17.57 12.64 18.63 18.83 17.47 22.76 29.49 46.85 7.80 5.66 13.17 14.14 10.41 26.81 11.25 30.60 34.53 33.38 22.37 14.82 25.54 50 I8_AR2 ActiveIntronRegion 0 4.60 17.70 17.78 19.10 24.82 26.65 20.63 18.37 24.70 54.03 6.58 5.26 15.34 15.57 11.81 18.27 6.33 27.82 24.85 25.56 17.45 15.13 21.08 51 I8_SR2 SilentIntronRegion 0 1.35 9.07 0.00 1.29 17.02 19.87 23.63 4.93 3.50 3.27 1.23 0.00 2.46 5.97 5.40 13.26 6.31 1.76 18.20 6.76 11.21 5.31 14.90 52 E9_Aa NovelBoundary 0 0.00 12.43 32.23 21.04 12.22 18.74 4.24 44.24 24.91 40.80 2.68 0.00 0.00 9.71 5.93 11.11 4.58 27.77 22.40 25.38 20.70 2.69 23.22 53 ER9a ExonRegion 0 18.80 63.48 123.59 46.93 34.81 46.62 44.06 82.16 76.34 91.48 47.48 30.53 31.13 94.63 55.08 77.45 53.82 145.14 77.59 97.88 61.80 41.54 49.83 54 E9_Da NovelBoundary 0 0.00 0.00 20.31 5.16 3.65 0.00 4.42 42.80 14.76 52.33 0.00 0.00 0.00 7.06 5.81 15.72 7.76 21.64 19.67 28.44 0.00 2.94 19.89 55 E9a_E10a KnownJunction 0 13.85 67.09 123.83 45.78 52.72 84.67 66.95 86.67 67.01 61.16 54.17 43.06 34.25 64.92 55.13 90.49 61.80 189.11 83.86 82.20 62.58 63.38 79.99 56 Ix Intron 0 2.80 2.99 18.01 11.28 3.15 6.21 6.87 21.80 17.68 42.39 3.34 0.92 1.71 13.16 6.56 14.87 5.47 17.51 15.12 20.67 7.94 7.97 18.37 57 Ix_SR1 SilentIntronRegion 0 2.79 0.19 7.38 8.67 1.18 4.84 5.28 8.55 8.17 18.91 1.70 4.70 0.00 15.36 9.90 10.45 5.07 16.37 11.07 23.81 5.78 6.05 14.56 58 Ix_AR1 ActiveIntronRegion 0 0.00 2.03 6.13 6.00 0.00 1.47 1.32 3.46 8.65 11.81 0.00 0.00 0.00 4.71 5.22 0.00 3.30 11.83 9.56 11.06 1.54 3.13 13.51 59 Ix_AR2 ActiveIntronRegion 0 0.00 4.07 5.15 5.18 0.00 5.50 1.32 2.77 8.03 8.72 0.00 0.00 0.00 4.71 2.90 0.00 3.30 12.38 15.93 5.53 2.20 0.83 14.10 60 Ix_AR3 ActiveIntronRegion 0 0.91 4.21 8.44 4.12 0.00 4.54 4.78 7.19 7.66 13.27 0.26 0.00 3.09 14.95 1.58 19.32 3.00 19.40 16.72 10.49 3.66 0.00 18.69 61 Ix_AR4 ActiveIntronRegion 0 6.94 5.11 14.33 9.22 2.70 0.00 5.09 15.18 16.69 37.83 3.62 0.00 2.65 9.99 4.19 12.33 5.43 21.08 6.15 24.84 7.33 5.61 10.99 62 Ix_AR5 ActiveIntronRegion 0 2.80 3.00 21.24 10.39 5.85 3.69 7.31 14.91 14.10 38.35 4.76 0.00 4.69 12.87 6.75 13.04 5.65 19.47 12.50 24.07 8.87 6.46 15.45 63 Ix_AR6 ActiveIntronRegion 0 1.41 0.37 18.69 11.75 0.83 7.93 3.13 8.46 14.49 35.90 1.09 0.00 0.00 9.30 3.23 15.03 2.43 6.82 1.79 15.75 10.01 7.59 4.93 64 Ix_AR7 ActiveIntronRegion 0 2.12 6.10 22.67 14.99 0.00 7.56 11.92 22.69 14.05 39.85 3.87 0.00 0.00 14.82 6.17 14.86 0.00 17.55 6.37 10.37 8.81 7.55 13.21 65 Ix_AR8 ActiveIntronRegion 0 3.27 5.11 22.86 13.22 4.09 7.43 7.25 21.47 15.85 44.21 4.76 0.00 0.00 13.29 5.47 11.32 0.00 17.68 12.11 23.05 8.10 10.59 17.40 66 Ix_SR2 SilentIntronRegion 0 2.10 3.24 17.56 10.04 3.03 6.31 6.64 25.00 18.55 42.79 3.61 0.28 1.84 13.05 6.05 16.90 6.15 18.45 18.43 18.60 8.07 8.48 20.97 67 Ix_AR9 ActiveIntronRegion 0 4.49 1.99 28.71 21.18 6.17 11.13 12.87 41.12 31.46 79.08 4.06 3.50 2.53 16.97 12.26 16.08 10.24 17.40 22.09 28.87 9.75 11.03 26.22 68 E10_Aa NovelBoundary 0 13.11 12.10 38.41 18.38 12.48 2.21 14.62 47.03 38.86 85.88 9.90 0.00 20.13 15.19 9.64 34.69 7.57 34.12 21.65 49.15 3.15 20.08 41.83 69 ER10a ExonRegion 0 22.06 55.58 118.32 49.25 53.60 65.24 65.32 92.84 84.38 107.70 52.39 39.42 27.29 96.59 63.65 121.68 70.07 198.49 114.09 107.83 74.66 45.58 75.02 70 E10_Da NovelBoundary 0 6.59 0.00 29.15 20.21 3.82 4.49 3.71 34.79 26.50 34.49 7.48 0.00 0.00 7.24 14.83 7.35 0.00 31.55 20.80 22.88 10.81 21.86 29.71 71 E10a_E11a KnownJunction 0 20.60 67.49 121.79 61.60 60.95 47.81 46.64 102.19 96.58 131.30 48.17 55.67 12.99 102.60 69.10 85.70 30.01 157.77 108.05 92.74 61.78 51.19 79.30 72 Ix Intron 0 8.83 7.23 29.91 18.52 7.65 12.33 9.72 29.66 25.74 49.39 6.57 1.93 2.90 10.19 7.94 15.62 7.14 39.81 23.62 41.43 16.34 10.63 16.79 73 Ix_SR1 SilentIntronRegion 0 9.65 6.41 23.23 16.09 7.78 12.12 11.52 21.49 20.07 40.94 4.87 2.18 2.57 9.06 6.90 13.05 7.37 35.35 20.95 40.16 12.31 9.66 13.87 74 Ix_AR1 ActiveIntronRegion 0 8.04 8.12 36.99 21.13 7.56 12.62 7.92 38.26 31.75 58.41 8.37 1.68 3.26 11.41 9.06 18.36 6.95 44.67 26.53 42.99 20.61 11.68 19.90 75 E11_Aa NovelBoundary 0 17.11 11.77 28.80 25.84 30.48 17.55 2.08 27.97 41.84 58.72 5.16 0.00 0.00 7.18 15.70 26.23 0.00 61.64 27.58 37.71 16.25 21.98 23.30 76 ER11a ExonRegion 0 25.51 43.94 96.63 38.18 28.83 42.86 35.89 84.33 70.38 99.78 25.95 8.51 15.41 52.58 40.08 57.03 21.93 105.00 61.20 64.98 42.18 34.81 36.29