Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SPIRE2 Gene 0 11.92 43.41 63.50 35.68 26.83 44.00 22.16 51.68 89.65 69.72 2.07 4.92 6.04 5.00 9.26 6.13 5.07 71.72 95.61 51.22 27.62 14.99 26.88 2 393062 Transcript 0 0.00 0.00 4.44 2.90 0.00 10.68 4.50 2.46 0.00 3.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 7.72 2.49 0.00 0.00 4.01 3 389207 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 378247 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 443454 Transcript 0 4.48 4.42 2.03 2.19 0.04 1.50 4.14 3.43 4.59 9.48 0.00 0.00 0.03 0.02 0.00 0.00 0.05 13.61 7.03 10.14 1.20 0.01 3.67 6 ER1a ExonRegion 0 0.24 1.81 9.09 1.95 0.69 6.47 1.17 10.63 11.31 13.31 0.67 0.00 0.46 0.23 1.14 0.00 1.96 20.44 14.92 17.16 8.36 0.72 7.90 7 E1a_E2a KnownJunction 0 3.41 15.85 25.25 5.23 12.31 18.00 6.40 8.58 37.18 34.63 0.00 0.00 6.82 0.00 4.45 0.00 4.58 25.41 13.55 22.05 8.65 5.02 4.35 8 I1 Intron 0 2.76 12.78 19.20 8.14 5.36 4.34 7.00 13.00 11.58 13.72 0.22 0.25 0.79 0.32 0.37 0.65 0.78 26.49 25.36 24.64 2.85 0.69 6.89 9 I1_SR1 SilentIntronRegion 0 4.03 13.38 18.56 8.97 5.80 4.90 9.32 14.01 13.19 16.73 0.44 0.42 1.36 0.54 0.48 1.02 1.02 28.07 27.55 34.94 2.91 0.92 8.18 10 I1_AR3 ActiveIntronRegion 0 6.10 9.03 18.69 4.03 7.65 5.29 7.60 12.48 10.59 15.96 0.00 0.00 0.00 0.23 0.74 0.54 0.00 26.07 26.35 37.76 3.57 0.38 5.82 11 I1_SR2 SilentIntronRegion 0 10.11 8.72 15.69 3.87 5.10 4.39 9.47 12.31 3.51 7.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.56 25.81 38.58 6.30 0.00 11.23 12 I1_SR3 SilentIntronRegion 0 1.97 12.65 24.70 12.32 5.41 3.71 5.56 17.22 15.60 14.88 0.00 0.00 0.00 0.31 0.00 1.39 1.80 32.50 31.20 21.34 2.91 0.49 6.16 13 I1_SR4 SilentIntronRegion 0 6.29 6.41 13.49 3.53 0.81 1.39 2.96 9.34 8.29 10.70 0.00 0.00 0.00 0.34 0.52 0.84 0.83 19.94 28.83 13.55 2.71 1.05 6.09 14 I1_AR6 ActiveIntronRegion 0 1.47 11.23 19.29 5.84 3.41 3.35 3.42 11.68 7.66 11.38 0.00 0.00 0.44 0.15 0.38 0.81 0.87 22.59 14.28 22.24 3.86 0.28 4.91 15 I1_SR5 SilentIntronRegion 0 1.33 13.33 19.70 7.82 5.27 4.18 5.86 12.11 10.59 11.64 0.14 0.21 0.63 0.15 0.32 0.17 0.47 25.02 23.55 15.98 2.51 0.62 6.22 16 E2_Aa NovelBoundary 0 6.74 8.55 25.93 8.59 4.33 13.29 11.00 23.45 12.18 17.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.86 65.98 36.56 5.99 3.12 3.41 17 ER2a ExonRegion 0 2.21 18.30 27.38 4.49 9.73 14.71 9.30 13.20 39.97 26.85 0.00 0.00 5.22 2.51 1.85 0.00 6.83 28.30 33.08 25.58 33.46 4.02 9.41 18 E2a_E3b KnownJunction 0 3.78 23.55 43.32 6.69 3.90 18.80 16.38 20.70 61.49 34.57 0.00 0.00 6.01 2.12 0.00 0.00 4.21 58.62 57.51 27.68 34.66 5.69 7.43 19 I2 Intron 0 1.43 8.53 9.30 4.50 6.81 4.77 6.65 9.01 12.44 12.99 0.00 0.00 0.28 0.10 0.33 0.11 0.18 26.45 15.23 24.44 3.07 0.80 3.23 20 I2_SR1 SilentIntronRegion 0 1.67 5.26 13.93 5.90 3.69 1.90 5.60 9.96 8.66 10.61 0.00 0.00 0.76 0.26 0.00 0.00 0.00 18.04 17.38 13.23 1.06 0.82 2.89 21 I2_AR1 ActiveIntronRegion 0 1.45 16.20 16.29 5.89 13.88 7.66 14.68 13.16 18.70 19.04 0.00 0.00 1.32 0.34 0.94 0.00 0.50 28.60 20.52 40.66 2.74 0.78 4.35 22 I2_SR2 SilentIntronRegion 0 1.42 7.39 7.31 4.08 5.76 4.56 5.12 8.11 11.72 12.14 0.00 0.00 0.00 0.03 0.25 0.15 0.14 27.38 14.00 22.64 3.43 0.81 3.07 23 E3_Aa NovelBoundary 0 3.78 0.00 8.72 1.66 0.00 0.00 2.03 4.39 6.25 7.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.00 4.14 20.39 0.00 0.00 0.00 24 ER3a ExonRegion 0 4.48 4.42 2.03 2.19 0.04 1.50 4.14 3.43 4.59 9.48 0.00 0.00 0.03 0.02 0.00 0.00 0.05 13.61 7.03 10.14 1.20 0.01 3.67 25 E3_Ab KnownBoundary 0 0.00 3.09 1.33 0.00 0.00 0.00 1.99 10.23 4.57 3.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.67 0.00 11.38 2.59 0.00 13.06 26 ER3b ExonRegion 0 2.41 15.56 34.69 14.83 2.84 17.88 6.45 35.16 53.07 52.13 0.00 0.00 0.62 1.00 0.16 0.63 0.34 67.60 52.32 44.82 25.44 8.88 13.04 27 E3a_E4a KnownJunction 0 3.78 25.52 36.63 24.91 0.00 55.25 13.65 35.90 75.14 59.74 0.00 0.00 0.00 2.41 4.45 4.36 0.00 75.57 78.68 40.20 31.14 12.00 11.95 28 ER4a ExonRegion 0 2.56 21.82 37.12 22.45 11.30 41.29 12.90 45.47 76.70 57.93 0.00 13.47 2.43 3.01 2.08 2.83 1.43 79.59 65.79 39.16 22.20 4.94 19.72 29 E4a_E5a KnownJunction 0 3.70 17.96 55.73 30.13 32.51 49.35 14.00 41.53 102.49 69.30 0.00 0.00 0.00 0.00 10.75 0.00 4.39 93.44 87.72 50.30 23.85 9.00 16.05 30 ER5a ExonRegion 0 6.63 33.07 66.72 41.45 17.22 33.98 16.41 55.22 131.10 97.53 1.24 0.00 3.22 2.99 1.95 0.95 1.39 119.63 128.44 62.84 36.52 8.67 22.50 31 E5_Da NovelBoundary 0 5.41 12.96 29.42 19.84 9.68 12.95 10.20 13.14 44.33 49.51 0.00 0.00 12.99 0.00 0.00 0.00 0.00 56.13 44.14 37.26 20.08 7.35 9.82 32 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E5b_E6a KnownJunction 0 17.56 46.50 75.43 57.40 34.89 12.78 14.84 35.12 111.63 116.55 0.00 6.60 20.45 0.00 0.00 0.00 0.00 134.35 133.37 78.49 41.39 18.92 31.41 34 ER5b ExonRegion 0 10.94 35.25 74.75 50.65 18.73 26.28 15.89 30.25 115.28 109.53 0.00 0.00 18.76 0.00 5.32 0.00 0.00 124.42 117.86 71.63 44.81 13.20 24.96 35 ER6a ExonRegion 0 8.22 28.35 83.45 38.46 25.19 36.38 19.30 35.40 116.07 119.32 1.98 0.00 2.37 1.57 2.87 1.74 1.94 91.39 112.59 65.74 32.37 7.97 22.18 36 E6_Da NovelBoundary 0 0.00 2.63 15.23 1.47 0.00 10.96 4.42 13.35 27.37 17.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.02 28.14 24.93 2.84 3.12 12.12 37 E6a_E7a KnownJunction 0 3.63 32.03 82.73 39.02 3.82 41.96 21.37 33.64 114.47 94.12 2.32 0.00 0.00 0.00 0.00 0.00 0.00 68.44 87.91 47.94 15.14 8.33 16.56 38 I6 Intron 0 0.00 1.60 9.71 2.80 2.63 2.17 1.30 5.07 8.34 9.09 0.00 0.00 0.00 0.00 0.00 0.00 1.30 15.55 11.29 5.45 2.17 0.82 1.16 39 I6_AR1 ActiveIntronRegion 0 0.00 1.65 9.93 2.84 2.62 2.24 1.35 5.23 8.60 9.33 0.00 0.00 0.00 0.00 0.00 0.00 1.34 15.87 11.55 5.54 2.16 0.85 1.19 40 E7_Aa NovelBoundary 0 9.56 9.41 11.03 5.39 8.15 2.67 0.00 6.28 6.74 20.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.45 12.61 11.89 8.03 0.00 0.00 41 ER7a ExonRegion 0 5.26 27.98 69.96 36.63 12.26 44.72 12.01 35.43 107.20 83.05 0.37 0.00 2.46 0.00 0.84 0.00 1.36 77.92 92.50 47.08 23.74 13.98 20.46 42 E7a_E8a KnownJunction 0 10.45 24.40 85.83 25.74 3.82 23.57 10.20 54.75 126.56 81.04 2.21 0.00 6.82 0.00 0.00 0.00 0.00 96.54 100.99 38.48 14.02 18.61 3.84 43 ER8a ExonRegion 0 4.74 26.35 76.90 31.36 14.83 33.80 20.31 63.03 118.48 88.23 2.66 1.07 5.16 0.83 0.58 0.00 2.41 97.50 107.37 56.63 28.82 17.53 33.34 44 E8a_E9a KnownJunction 0 14.22 33.15 94.53 45.91 29.88 42.53 17.80 81.33 156.10 103.53 2.16 0.00 0.00 7.42 0.00 0.00 4.77 139.12 221.56 70.37 36.88 48.80 60.86 45 ER9a ExonRegion 0 4.92 24.08 68.96 32.54 14.94 41.83 16.49 61.06 109.02 82.07 0.62 0.96 2.52 0.95 0.81 1.60 2.14 105.60 126.31 52.62 31.08 21.30 29.04 46 E9a_E10a KnownJunction 0 10.08 44.60 105.44 46.18 17.74 35.21 21.95 51.88 140.91 116.20 0.00 0.00 0.00 4.83 0.00 0.00 3.65 142.56 218.08 48.26 28.60 37.17 58.64 47 ER10a ExonRegion 0 6.69 45.58 55.53 29.67 9.90 38.33 18.43 46.38 73.62 65.03 0.00 0.00 1.49 2.72 0.92 1.34 0.91 74.78 119.78 47.28 33.89 19.29 34.36 48 E10_Da NovelBoundary 0 0.00 3.29 26.58 9.39 0.00 19.48 8.39 13.14 45.89 32.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.39 26.92 22.56 4.94 3.12 11.69 49 E10a_E11a KnownJunction 0 6.74 44.07 31.96 13.62 7.56 15.90 8.13 24.93 51.53 36.85 0.00 0.00 6.01 0.00 0.00 0.00 4.77 40.33 32.94 18.41 10.69 5.69 20.15 50 I10 Intron 0 6.32 29.56 47.69 27.63 18.02 29.34 16.61 39.23 63.21 41.28 0.51 0.83 1.72 0.91 1.63 1.28 0.55 37.23 53.71 31.77 13.09 6.08 14.13 51 I10_SR1 SilentIntronRegion 0 2.14 13.39 17.62 11.20 4.59 11.21 7.03 19.36 27.80 23.78 0.00 0.00 0.00 0.27 0.83 0.60 0.00 32.88 29.19 23.46 6.51 4.23 9.63 52 I10_AR1 ActiveIntronRegion 0 4.63 29.83 47.16 28.54 21.78 34.07 14.88 40.44 73.84 48.41 0.51 0.95 0.00 0.71 2.72 0.00 0.15 58.71 78.21 44.37 14.84 6.26 19.84 53 I10_AR2 ActiveIntronRegion 0 4.23 24.69 48.93 34.95 6.50 29.60 8.13 28.77 77.19 37.68 0.14 0.00 0.00 0.00 2.28 0.00 3.30 55.17 91.24 39.97 19.20 2.68 12.59 54 I10_AR3 ActiveIntronRegion 0 1.89 13.38 20.79 14.91 8.57 15.53 10.03 12.67 36.15 16.92 1.48 0.00 0.00 0.00 2.31 0.00 1.29 22.75 45.04 18.48 9.09 0.39 4.59 55 I10_AR4 ActiveIntronRegion 0 0.00 4.50 15.19 6.72 8.51 18.34 4.07 9.32 17.95 14.46 0.00 0.00 0.00 1.68 0.73 0.74 0.00 9.63 17.06 13.15 0.87 3.94 5.03 56 I10_AR5 ActiveIntronRegion 0 8.25 35.58 58.28 33.04 21.82 34.34 20.37 46.97 73.20 46.89 0.60 1.11 2.70 1.17 1.58 1.83 0.69 35.67 56.27 32.77 14.98 7.02 15.11 57 E11_Aa NovelBoundary 0 0.00 35.85 66.64 53.07 31.24 56.44 17.44 69.09 119.82 65.97 0.00 0.00 0.00 2.83 0.00 3.42 4.77 42.45 49.22 44.04 11.43 9.12 15.54 58 ER11a ExonRegion 0 14.36 77.70 102.73 59.41 33.00 78.32 33.40 84.78 142.88 113.83 2.19 0.00 2.68 1.25 2.58 1.12 5.67 118.23 131.21 84.78 30.39 17.29 43.18 59 E11a_E12a KnownJunction 0 21.19 89.92 167.65 125.09 45.67 84.84 48.18 135.79 246.90 168.51 0.00 0.00 6.82 4.77 4.45 0.00 0.00 146.25 168.48 120.68 45.47 30.43 79.13 60 ER12a ExonRegion 0 8.72 92.47 122.25 70.57 29.98 85.46 34.66 99.72 171.26 126.72 2.90 0.00 7.45 3.39 1.02 4.46 0.00 90.95 117.48 90.43 35.75 17.53 36.79 61 E12_Da NovelBoundary 0 3.63 8.49 13.51 0.00 11.29 4.88 17.36 4.15 10.65 11.50 0.00 0.00 0.00 0.00 0.00 3.67 0.00 13.02 0.00 5.75 7.72 5.82 8.02 62 E12a_E13a KnownJunction 0 17.86 112.61 66.29 18.61 49.15 108.35 42.48 52.99 82.44 67.64 0.00 0.00 6.66 0.00 0.00 0.00 0.00 52.89 87.44 64.17 19.65 11.76 21.00 63 E12a_E15a KnownJunction 0 0.00 0.00 4.44 2.90 0.00 10.68 4.50 2.46 0.00 3.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 7.72 2.49 0.00 0.00 4.01 64 I12_SR1 SilentIntronRegion 0 1.46 6.05 0.78 2.52 5.50 12.71 4.24 6.14 7.73 5.63 0.00 5.62 0.00 2.74 1.41 3.29 0.00 9.21 8.18 7.50 5.39 1.10 13.73 65 I12_AR1 ActiveIntronRegion 0 0.00 2.26 1.23 4.09 0.30 10.39 7.94 4.03 7.96 6.50 0.00 17.32 0.00 0.00 0.00 2.97 0.00 16.84 3.19 4.26 6.61 2.08 17.95 66 I12_SR2 SilentIntronRegion 0 4.52 7.87 1.59 4.80 12.15 4.38 7.17 0.86 4.99 2.53 0.52 1.63 5.60 3.19 1.09 4.93 2.64 4.48 5.19 1.44 3.48 1.70 11.09 67 I12_AR2 ActiveIntronRegion 0 6.63 16.26 14.81 13.73 14.15 8.68 8.59 13.98 13.83 13.41 0.22 5.64 8.76 6.83 3.90 6.47 1.64 23.75 11.40 16.31 4.32 3.94 6.11 68 E13a_E14a KnownJunction 0 12.97 104.19 69.99 69.95 109.76 186.65 57.06 70.85 129.63 106.37 0.00 0.00 0.00 0.00 0.00 3.59 0.00 72.05 123.49 60.34 19.15 5.51 27.15 69 ER13a ExonRegion 0 12.40 108.80 82.89 48.58 66.80 142.45 48.28 79.39 125.76 103.39 0.00 0.00 9.72 0.00 0.52 0.00 0.00 79.39 108.53 69.91 22.43 9.30 27.37 70 E14_Aa NovelBoundary 0 0.00 5.92 13.33 5.39 32.85 2.90 6.01 7.43 9.66 5.80 0.00 5.85 6.01 0.00 10.75 3.93 0.00 20.31 8.75 0.00 5.25 0.00 19.29 71 ER14a ExonRegion 0 22.97 99.65 162.34 101.53 72.84 134.53 45.92 139.51 212.88 152.75 1.70 0.00 3.76 5.77 8.18 5.23 2.85 168.59 196.20 117.50 41.78 32.15 47.37 72 E14_Da NovelBoundary 0 7.11 5.79 4.14 5.23 3.48 7.38 1.99 10.19 3.12 3.01 2.26 0.00 6.17 2.35 0.00 0.00 4.77 9.87 13.37 9.08 5.37 2.57 14.94 73 E14a_E15a KnownJunction 0 10.00 87.42 172.55 95.99 62.65 97.16 40.94 121.05 227.37 177.72 0.00 0.00 0.00 0.00 14.22 0.00 0.00 165.65 279.16 119.27 42.56 10.16 57.62 74 I14 Intron 0 4.71 2.83 6.85 2.26 3.72 3.06 4.05 8.23 3.84 5.70 2.69 5.52 2.26 7.33 7.23 12.80 4.13 10.08 5.75 5.91 8.57 3.18 6.12 75 I14_SR1 SilentIntronRegion 0 4.74 2.85 6.91 2.28 3.75 3.08 4.08 8.29 3.87 5.75 2.71 5.57 2.28 7.38 7.29 12.89 4.16 10.17 5.80 5.96 8.65 3.21 6.17 76 ER15a ExonRegion 0 22.01 63.61 73.07 44.95 46.04 53.80 33.31 58.31 94.17 68.57 4.03 11.97 12.15 10.91 22.27 14.57 10.61 60.49 112.91 52.43 31.60 20.66 34.40 77 IG51 Intergenic 0 1.50 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 5.05 0.00 1.89 6.41 4.21 11.69 1.31 0.00 3.01 4.68 0.00 4.16 78 IG51_SR1 SilentIntergenicRegion 0 1.54 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 0.00 5.20 0.00 1.95 6.59 4.33 12.02 1.35 0.00 3.10 4.82 0.00 4.28