Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C16orf47 Gene 0 0.74 17.92 4.06 2.06 5.74 4.36 2.06 7.53 67.75 12.99 0.00 0.00 0.00 0.05 0.00 0.00 0.26 0.86 0.37 3.57 1.63 1.62 0.92 2 358463 Transcript 0 0.43 13.08 4.48 1.03 7.74 4.68 1.54 8.79 73.70 10.90 0.00 0.00 0.00 0.12 0.00 0.00 0.21 0.99 0.93 4.62 1.99 0.49 0.18 3 IG44_AR29 ActiveIntergenicRegion 0 3.17 17.75 11.68 3.20 17.02 2.39 4.68 15.42 9.82 9.43 0.00 0.00 0.00 0.40 0.00 0.00 0.99 0.69 0.48 3.63 0.00 0.00 0.00 4 IG44_AR28 ActiveIntergenicRegion 0 2.63 16.66 6.98 2.16 9.41 2.69 3.76 15.75 19.16 11.63 0.00 0.00 0.00 0.00 0.00 0.00 1.21 1.69 0.29 4.74 0.00 0.00 0.27 5 IG44_AR24 ActiveIntergenicRegion 0 3.65 36.71 11.41 9.74 27.21 6.58 4.05 17.54 18.19 26.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 1.03 4.24 0.00 0.00 0.00 6 IG44_AR23 ActiveIntergenicRegion 0 15.83 42.34 53.45 3.82 38.41 3.21 42.76 22.30 17.55 26.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 11.28 0.00 0.00 0.00 7 IG44_SR22 SilentIntergenicRegion 0 10.40 28.25 45.28 3.65 22.77 2.41 27.56 18.51 16.85 20.08 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.79 0.37 8.37 0.00 0.00 0.00 8 IG44_AR22 ActiveIntergenicRegion 0 10.71 30.97 58.02 6.24 30.40 1.62 27.79 18.59 19.51 20.42 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.75 1.62 11.26 0.00 0.00 2.35 9 IG44_SR21 SilentIntergenicRegion 0 6.79 22.91 34.36 3.99 27.11 1.51 25.77 13.29 13.63 15.24 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.45 0.08 8.19 0.00 0.05 0.00 10 IG44_AR21 ActiveIntergenicRegion 0 1.70 15.82 49.65 5.00 27.25 2.07 19.25 23.55 11.90 20.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.72 18.22 0.00 0.00 0.00 11 IG44_SR20 SilentIntergenicRegion 0 7.69 17.91 20.33 1.60 23.99 1.16 26.07 8.82 12.14 9.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.14 10.96 0.00 0.00 0.00 12 IG44_AR20 ActiveIntergenicRegion 0 4.14 15.21 8.04 0.00 18.56 0.00 18.68 3.87 11.28 7.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 6.75 0.00 0.00 0.00 13 IG44_SR19 SilentIntergenicRegion 0 4.44 20.02 15.23 2.30 15.79 1.11 22.66 9.89 10.49 13.02 0.00 0.04 0.00 0.05 0.00 0.00 0.31 0.31 0.17 8.34 0.05 0.02 0.06 14 IG44_AR18 ActiveIntergenicRegion 0 0.60 26.96 1.93 2.90 3.30 3.29 1.13 4.70 7.22 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 1.32 0.00 0.00 0.00 15 IG44_SR12 SilentIntergenicRegion 0 0.78 22.60 1.63 2.33 4.13 0.66 1.19 5.92 13.74 6.34 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.07 0.39 1.62 0.00 0.00 0.00 16 IG44_SR11 SilentIntergenicRegion 0 0.52 34.87 3.13 3.15 7.23 2.25 1.99 10.07 18.65 9.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.11 0.00 0.00 0.00 17 IG44_AR10 ActiveIntergenicRegion 0 0.00 30.43 1.47 2.62 6.24 0.67 1.15 5.83 11.77 9.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 18 IG44_SR9 SilentIntergenicRegion 0 0.86 26.49 2.44 3.24 5.23 1.46 1.60 7.31 16.10 7.87 0.00 0.00 0.03 0.00 0.03 0.00 0.17 0.16 0.16 1.88 0.00 0.00 0.00 19 IG44_AR7 ActiveIntergenicRegion 0 0.39 28.76 0.41 2.49 8.72 0.34 1.07 2.70 8.18 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.79 0.00 0.00 0.00 20 IG44_SR7 SilentIntergenicRegion 0 0.50 16.74 1.44 2.25 4.17 0.94 0.88 4.83 7.25 3.34 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.02 0.34 1.50 0.00 0.00 0.03 21 IG44_AR4 ActiveIntergenicRegion 0 0.00 7.64 0.00 1.71 1.36 0.00 1.12 0.49 15.61 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 22 IG44_SR4 SilentIntergenicRegion 0 0.67 15.34 1.31 2.22 4.48 1.28 0.92 4.90 39.60 4.36 0.00 0.05 0.00 0.00 0.00 0.00 0.07 0.18 0.32 0.79 0.00 0.00 0.07 23 IG44_AR3 ActiveIntergenicRegion 0 0.71 11.68 1.83 1.02 5.35 0.31 1.86 4.13 33.56 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.35 0.00 0.00 0.00 24 IG44_SR3 SilentIntergenicRegion 0 0.36 10.27 0.64 0.90 2.65 0.67 0.64 3.39 30.59 2.86 0.00 0.06 0.00 0.00 0.00 0.00 0.10 0.23 0.16 0.91 0.00 0.01 0.03 25 IG44_AR2 ActiveIntergenicRegion 0 0.91 31.11 2.73 3.71 5.41 0.79 0.85 5.09 33.84 3.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 26 IG44_SR2 SilentIntergenicRegion 0 1.09 32.24 1.60 2.03 4.34 7.22 1.27 5.25 37.59 4.69 0.00 0.00 0.00 0.01 0.00 0.00 0.25 0.59 0.22 3.24 0.02 0.07 0.01 27 IG44_AR1 ActiveIntergenicRegion 0 2.05 79.74 2.49 1.87 6.44 36.01 2.62 10.27 49.25 6.69 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.80 0.15 5.56 0.00 0.40 0.14 28 IG44_SR1 SilentIntergenicRegion 0 0.82 26.41 1.85 2.03 6.33 2.40 0.94 6.48 39.24 6.60 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.21 0.26 1.86 0.02 0.02 0.01 29 ER1a ExonRegion 0 0.00 7.21 0.04 0.00 0.99 1.93 0.00 0.04 10.06 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 30 E1a_E2a KnownJunction 0 0.00 3.35 0.00 0.00 0.00 2.21 0.00 0.00 14.64 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER2a ExonRegion 0 1.35 25.11 6.36 0.10 10.87 9.60 2.38 12.94 125.10 13.30 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.76 0.72 8.72 4.16 1.33 0.00 32 E2a_E3a KnownJunction 0 0.00 13.35 9.22 0.00 21.90 11.02 1.99 22.39 144.76 26.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 4.61 15.34 6.30 0.00 0.00 33 I2 Intron 0 0.63 6.59 0.89 0.94 2.57 0.89 0.48 2.45 19.38 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.99 0.00 0.00 0.00 34 I2_SR1 SilentIntronRegion 0 0.63 6.59 0.89 0.94 2.57 0.89 0.48 2.45 19.38 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.99 0.00 0.00 0.00 35 E3_Aa NovelBoundary 0 0.00 9.47 0.00 0.00 0.00 8.35 0.00 0.00 32.55 1.67 0.00 0.00 0.00 0.00 0.00 0.00 3.83 0.00 0.00 0.00 0.00 0.00 0.00 36 ER3a ExonRegion 0 0.85 24.53 10.28 3.32 15.72 3.64 4.35 19.57 160.90 19.46 0.00 0.00 0.00 0.06 0.00 0.00 1.33 2.84 0.83 4.71 1.80 0.00 0.00 37 E3_Da NovelBoundary 0 0.00 19.93 0.00 4.13 0.00 0.00 6.76 0.00 25.84 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 38 E3a_E4a KnownJunction 0 0.00 0.00 1.83 1.47 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 I3 Intron 0 0.57 13.11 2.12 1.64 2.82 1.78 0.39 4.38 36.36 4.66 0.00 0.10 0.00 0.00 0.00 0.00 0.09 0.57 0.26 2.70 0.24 0.22 0.00 40 I3_SR1 SilentIntronRegion 0 0.00 7.94 3.34 1.90 1.89 1.29 0.00 4.30 22.64 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 1.00 0.69 0.00 0.00 41 I3_AR1 ActiveIntronRegion 0 0.42 14.06 1.30 0.92 2.48 2.38 0.61 4.62 38.63 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.30 2.99 0.14 0.00 0.00 42 I3_SR2 SilentIntronRegion 0 0.76 13.68 2.29 1.95 3.17 1.59 0.36 4.28 37.97 5.40 0.00 0.16 0.00 0.00 0.00 0.00 0.15 0.59 0.00 2.89 0.20 0.38 0.00 43 E4_Aa NovelBoundary 0 0.00 36.38 7.39 0.00 4.33 0.00 0.00 7.89 65.62 15.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.14 0.00 0.00 0.00 44 ER4a ExonRegion 0 0.78 17.99 3.62 2.35 4.68 4.37 2.03 6.56 58.96 13.94 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.73 0.34 3.49 1.63 2.10 1.24 45 IG43 Intergenic 0 1.00 19.50 2.19 1.94 4.77 2.30 0.72 6.67 37.07 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.22 0.12 1.39 0.27 0.13 0.04 46 IG43_SR1 SilentIntergenicRegion 0 1.00 19.51 2.19 1.94 4.78 2.30 0.72 6.67 37.07 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.22 0.12 1.39 0.27 0.13 0.04