Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC009022.2 Gene 0 27.68 18.11 33.19 21.98 25.06 33.21 19.89 41.29 70.18 26.20 40.63 43.55 34.55 19.30 21.18 57.74 31.15 51.14 39.34 35.87 44.48 73.87 70.19 2 334913 Transcript 0 10.52 0.55 0.98 1.74 2.17 0.64 2.54 4.60 1.73 2.63 2.21 0.00 0.00 3.12 1.17 14.55 3.59 2.82 3.87 4.71 7.05 6.10 10.46 3 325845 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 ER1a ExonRegion 0 21.03 1.10 1.96 3.48 4.33 1.28 5.09 9.19 3.45 5.26 4.42 0.00 0.00 6.24 2.35 29.11 7.18 5.63 7.74 9.42 14.10 12.20 20.93 5 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 I1_AR4 ActiveIntronRegion 0 10.58 8.47 0.00 0.00 1.78 0.00 10.15 5.19 2.68 0.00 0.00 6.49 4.69 0.00 2.90 0.00 3.30 0.00 3.19 4.26 2.20 0.00 11.75 7 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER4a ExonRegion 0 4.43 1.79 2.85 3.30 6.29 12.17 3.35 4.04 14.12 8.40 5.41 2.87 4.44 2.96 1.41 9.60 1.74 15.63 5.08 8.54 7.83 4.79 8.57 10 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER5a ExonRegion 0 9.20 9.52 13.01 12.14 12.20 17.00 10.37 15.19 25.97 12.18 21.14 31.68 6.75 15.40 11.21 43.46 19.66 31.64 37.07 27.43 28.01 39.14 37.60 12 E5a_E6a KnownJunction 0 7.48 9.34 14.49 7.52 7.81 2.38 12.59 21.11 10.91 8.22 12.37 18.31 6.82 7.06 10.26 36.06 8.23 22.01 17.41 18.41 5.68 61.60 52.84 13 I5_AR1 ActiveIntronRegion 0 2.06 2.96 2.65 0.99 10.35 6.23 7.04 1.25 7.14 0.83 2.82 15.30 14.92 5.10 2.98 11.52 7.99 3.55 3.09 3.10 8.56 14.17 7.13 14 E6_Aa NovelBoundary 0 30.82 21.51 14.81 12.09 29.03 58.60 74.63 17.62 50.72 20.90 37.17 43.36 26.30 26.19 0.00 44.52 33.29 37.02 24.57 41.03 53.13 39.37 44.99 15 ER6a ExonRegion 0 20.02 17.57 31.84 21.13 39.54 24.11 21.84 37.26 64.42 29.41 36.18 52.01 38.45 21.17 13.07 54.45 45.03 49.46 47.19 40.11 56.83 69.97 66.17 16 E6a_E7a KnownJunction 0 9.04 23.09 19.37 25.70 14.43 12.49 17.97 35.69 67.42 29.31 25.90 31.06 0.00 12.48 11.00 32.30 17.48 34.12 12.33 31.89 14.70 66.81 54.80 17 ER7a ExonRegion 0 35.20 19.93 37.52 41.21 34.22 46.12 31.36 58.59 106.01 43.32 61.43 74.07 30.92 30.07 20.68 55.22 55.04 40.08 46.96 50.70 46.17 123.49 72.86 18 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER8a ExonRegion 0 30.42 23.71 27.00 27.67 34.24 36.53 32.40 60.92 97.18 39.57 55.76 66.99 46.63 20.50 25.97 58.07 36.26 56.49 48.47 26.86 43.04 101.37 72.10 20 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E9_Aa NovelBoundary 0 12.74 6.12 5.56 7.23 23.09 5.62 8.13 7.19 10.47 4.24 2.58 6.30 0.00 10.01 5.19 16.15 4.58 19.65 12.89 5.31 17.30 5.51 20.83 22 ER9a ExonRegion 0 42.55 21.07 30.49 29.15 40.29 37.53 31.95 53.63 84.01 38.80 69.64 74.98 78.85 21.30 26.07 92.87 48.37 63.04 52.90 45.64 64.07 94.54 104.31 23 E9_Da NovelBoundary 0 6.22 0.00 3.67 1.76 12.65 32.31 14.75 4.76 18.23 1.61 2.42 0.00 6.17 0.00 10.38 13.67 9.35 6.59 0.00 6.14 5.62 3.12 16.65 24 E9a_E10a KnownJunction 0 37.34 18.35 24.90 37.06 58.74 30.44 28.48 50.32 71.18 47.68 58.70 37.66 67.20 16.83 15.82 49.05 11.31 68.69 42.64 34.90 43.43 84.07 99.11 25 I9 Intron 0 6.48 5.48 4.70 5.84 9.34 4.27 14.02 4.89 16.90 4.29 2.01 3.87 9.21 1.13 1.00 8.37 3.64 4.84 4.68 4.69 4.59 6.12 6.47 26 I9_AR1 ActiveIntronRegion 0 4.93 5.48 4.22 5.91 8.25 4.24 13.98 5.39 17.05 4.18 2.09 4.60 7.91 1.11 0.95 9.86 4.07 5.11 4.67 4.61 5.27 5.40 6.82 27 I9_SR1 SilentIntronRegion 0 12.59 5.51 6.58 5.67 13.65 4.40 14.37 2.99 16.51 4.78 1.74 1.07 14.35 1.23 1.23 2.67 1.98 3.87 4.78 5.04 1.98 9.00 5.22 28 ER10a ExonRegion 1 29.20 11.64 11.68 17.84 21.51 44.82 13.22 40.61 44.00 24.17 15.00 39.57 35.09 13.67 17.52 38.37 4.51 35.53 35.24 17.18 18.30 63.53 47.77 29 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E11_Aa NovelBoundary 0 29.78 6.45 7.60 7.42 19.61 23.85 8.08 5.59 6.19 2.47 0.00 0.00 5.84 0.00 8.90 4.19 4.77 6.05 4.80 2.43 6.12 5.45 12.46 31 ER11a ExonRegion 0 17.43 11.36 31.74 17.40 17.63 37.63 21.31 33.15 54.35 23.56 23.97 18.54 23.89 14.39 23.04 62.13 32.04 50.48 49.17 34.69 32.87 83.12 74.94 32 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 I11 Intron 0 9.86 38.79 23.79 20.86 30.25 12.82 12.68 9.56 22.40 26.40 3.34 7.43 9.31 5.74 8.26 11.54 7.12 34.73 18.97 13.77 22.24 14.02 28.13 34 I11_SR1 SilentIntronRegion 0 9.90 38.92 23.87 20.93 30.35 12.86 12.73 9.59 22.47 26.49 3.35 7.45 9.34 5.76 8.29 11.58 7.15 34.85 19.03 13.82 22.32 14.07 28.22 35 ER12a ExonRegion 0 4.28 10.29 33.86 15.85 15.62 44.54 8.84 21.45 46.05 18.35 25.92 18.64 39.82 11.53 10.18 37.79 39.14 58.07 33.74 29.61 29.14 56.30 68.92 36 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER13a ExonRegion 0 32.05 30.20 45.87 15.40 24.38 45.96 20.81 37.47 69.67 25.72 37.55 22.30 28.52 15.14 23.50 75.50 35.61 47.44 42.15 37.40 51.82 61.50 79.14 38 E13a_E14a KnownJunction 0 72.83 40.32 65.70 34.13 84.13 90.12 50.43 69.25 140.22 42.28 51.86 77.58 26.62 44.21 47.59 178.24 85.93 104.79 78.03 89.68 120.59 174.58 165.09 39 E14_Aa NovelBoundary 0 6.67 3.35 4.79 5.13 8.66 0.00 2.08 16.47 6.63 8.95 0.00 0.00 6.82 0.00 0.00 4.36 8.42 2.28 14.31 6.14 6.30 3.12 16.82 40 ER14a ExonRegion 0 45.69 16.41 57.22 26.50 29.62 40.91 21.70 45.46 88.59 30.22 60.93 45.97 39.53 26.49 18.84 73.71 41.16 69.45 46.47 44.90 61.35 90.19 103.37 41 E14a_E15a KnownJunction 0 76.83 28.55 69.36 31.50 61.55 105.96 35.29 89.17 123.58 18.29 69.86 49.82 62.82 30.84 35.23 105.10 57.22 77.27 47.25 75.93 85.44 107.83 168.42 42 I14 Intron 0 7.46 6.76 7.23 8.51 9.12 3.13 8.95 5.43 7.87 6.27 3.02 4.13 6.64 1.35 3.66 9.62 5.53 8.60 2.95 5.59 11.52 5.96 13.32 43 I14_SR1 SilentIntronRegion 0 8.13 7.95 6.78 6.99 7.09 3.40 8.77 6.65 5.61 7.92 3.07 4.79 7.22 1.39 2.96 8.27 5.47 6.88 1.27 5.36 10.51 5.38 12.25 44 I14_AR1 ActiveIntronRegion 0 5.41 4.11 5.63 7.57 5.70 1.76 7.33 4.11 9.01 3.82 2.26 3.04 4.29 0.96 4.54 6.96 4.22 9.09 3.39 5.44 11.03 5.76 14.38 45 I14_AR2 ActiveIntronRegion 0 8.42 7.48 9.44 11.71 15.43 4.01 10.79 4.86 10.25 6.10 3.65 4.18 8.01 1.67 3.92 14.18 6.89 10.79 5.08 6.13 13.58 7.04 14.01 46 E15_Aa NovelBoundary 0 10.59 12.76 8.60 18.35 33.11 4.88 5.96 6.33 11.43 1.37 0.00 0.00 14.28 0.00 0.00 16.66 8.04 4.60 4.33 11.38 8.40 0.00 12.29 47 ER15a ExonRegion 0 43.95 25.44 46.76 31.67 42.65 52.53 25.62 72.90 107.79 14.12 64.16 64.52 57.38 29.81 29.07 100.82 50.03 70.65 39.47 71.92 76.44 84.48 128.87 48 E15a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER16a ExonRegion 0 38.49 8.52 42.22 23.49 22.28 29.77 16.90 47.91 99.66 11.72 61.52 39.24 44.26 28.37 24.62 93.85 33.63 53.30 44.84 52.13 62.15 100.73 97.51 50 E16_Da NovelBoundary 0 18.45 34.40 3.49 0.00 28.44 8.40 21.90 2.55 11.55 4.86 0.00 12.00 0.00 0.00 4.45 12.05 3.55 1.66 4.80 5.62 9.45 2.76 4.35 51 E16a_E17a KnownJunction 0 0.00 0.00 0.00 0.00 3.40 0.00 0.00 0.00 1.56 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 2.20 4.80 23.07 0.00 0.00 0.00 52 I16 Intron 0 7.96 19.05 8.63 8.13 13.93 6.31 12.84 5.36 11.79 9.45 2.63 7.63 8.79 2.50 5.11 5.01 5.55 16.11 14.29 7.32 11.29 6.18 12.23 53 I16_SR1 SilentIntronRegion 0 7.99 19.11 8.65 8.16 13.98 6.33 12.88 5.38 11.83 9.48 2.64 7.65 8.82 2.51 5.13 5.02 5.57 16.16 14.34 7.35 11.33 6.20 12.26 54 ER17a ExonRegion 0 32.60 19.65 46.18 17.72 10.58 28.72 15.50 48.77 91.94 16.34 40.27 57.69 48.85 20.89 28.78 53.60 20.73 62.55 28.99 43.80 69.16 53.68 61.57 55 E17_Da NovelBoundary 0 26.67 6.38 26.52 13.25 10.87 8.23 18.28 4.39 1.65 12.65 0.00 0.00 0.00 0.00 6.30 4.36 3.83 7.30 3.95 12.78 9.14 2.57 31.16 56 E17a_E18a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.79 0.00 0.00 3.50 57 ER18a ExonRegion 0 20.39 38.01 51.66 23.81 26.69 22.93 11.90 36.50 56.85 31.79 30.93 35.60 29.02 20.06 43.99 56.90 14.47 90.82 41.22 40.32 47.18 63.73 77.86 58 IG48_AR5 ActiveIntergenicRegion 0 7.10 2.05 2.36 3.27 3.59 3.69 1.78 0.86 0.62 0.45 8.29 2.39 5.74 1.89 6.60 4.99 3.32 3.39 4.28 3.57 3.70 3.25 11.82 59 IG48_AR4 ActiveIntergenicRegion 0 19.50 5.45 2.54 1.31 10.89 9.43 9.08 1.20 2.17 0.55 7.46 1.61 4.43 2.72 11.09 19.11 5.31 4.24 18.77 7.84 8.96 11.83 23.91 60 IG48_SR1 SilentIntergenicRegion 0 4.41 3.32 2.32 2.02 5.33 3.16 3.36 2.57 2.17 2.01 3.85 3.30 5.67 2.54 6.17 6.46 3.59 1.09 4.04 2.92 3.59 3.77 10.37