Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DPEP2 Gene 0 82.74 0.31 1.45 5.23 24.50 3.51 6.56 8.68 3.77 1.84 0.04 0.44 0.60 0.89 0.37 1.57 0.15 0.00 0.49 0.05 0.00 0.50 0.13 2 412757 Transcript 0 25.16 0.00 0.17 0.94 6.38 0.03 2.34 1.01 0.53 0.19 0.00 0.01 0.26 0.11 0.05 0.01 0.00 0.00 0.42 0.00 0.00 0.19 0.02 3 393847 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 268795 Transcript 0 2.65 0.00 0.00 0.00 0.00 0.00 0.17 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 322384 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 0 13.20 0.00 1.34 0.06 2.95 0.00 5.34 0.00 0.68 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 1.17 0.00 0.00 0.00 0.00 7 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER2a ExonRegion 0 16.60 0.00 0.00 2.00 6.54 0.22 2.95 1.97 0.49 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 9 E2_Ab KnownBoundary 0 188.11 29.40 30.81 14.05 150.85 43.50 166.45 19.51 25.78 25.25 25.74 55.82 53.57 48.21 27.20 61.01 70.03 43.36 62.40 71.20 25.08 13.96 28.77 10 ER2b ExonRegion 0 250.07 1.33 0.00 5.50 62.09 9.97 16.52 8.38 4.02 1.12 0.00 0.00 0.00 2.60 0.82 0.00 0.00 0.00 2.08 0.00 0.00 0.00 1.66 11 E2_Da KnownBoundary 0 49.34 27.96 64.10 29.57 54.92 40.66 84.09 40.70 65.86 55.71 62.54 0.00 0.00 7.12 21.51 65.97 63.77 103.63 59.01 108.60 52.76 16.84 39.61 12 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2c ExonRegion 0 22.67 0.00 0.00 1.97 6.71 0.00 1.25 0.72 1.83 0.81 0.00 0.00 0.00 0.15 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 14 E2_Db NovelBoundary 0 50.82 34.80 27.08 100.85 46.26 16.13 30.56 37.54 46.61 94.12 22.53 5.40 0.00 9.06 0.00 77.59 64.61 90.70 28.80 62.06 37.13 4.78 32.52 15 E2b_E3b KnownJunction 0 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 I2 Intron 0 26.19 0.12 0.64 2.50 20.09 2.76 4.24 3.88 2.09 0.84 0.00 0.07 0.62 0.61 0.00 0.99 0.13 0.00 0.00 0.17 0.00 0.16 0.06 17 I2_AR1 ActiveIntronRegion 0 22.33 0.55 0.99 4.40 20.27 3.47 3.40 5.93 2.74 1.62 0.00 0.00 2.09 0.36 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 I2_SR2 SilentIntronRegion 0 36.19 0.00 0.28 3.08 31.31 2.15 6.35 2.72 1.99 0.13 0.00 0.26 0.88 0.30 0.00 0.45 0.00 0.00 0.00 0.32 0.00 0.16 0.22 19 I2_AR2 ActiveIntronRegion 0 40.64 0.31 0.28 3.18 32.26 2.67 4.71 6.15 3.69 0.78 0.00 0.01 0.42 1.17 0.00 1.36 1.01 0.00 0.00 0.00 0.00 0.22 0.00 20 I2_AR3 ActiveIntronRegion 0 18.36 0.00 0.94 1.34 10.57 2.92 3.09 3.43 1.61 1.12 0.00 0.00 0.00 0.79 0.00 0.28 0.00 0.00 0.00 0.16 0.00 0.12 0.00 21 ER3a ExonRegion 0 2.65 0.00 0.00 0.00 0.00 0.00 0.17 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER3b ExonRegion 0 9.03 0.00 0.00 0.00 1.72 0.00 1.32 2.11 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E3_Ac KnownBoundary 0 13.63 0.00 0.00 0.00 4.33 0.00 0.00 2.42 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER3c ExonRegion 0 12.45 0.00 0.73 2.32 7.92 1.46 5.81 1.49 2.09 0.60 0.00 0.00 0.00 1.46 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E3_Da KnownBoundary 0 20.89 0.00 0.00 4.30 0.00 0.00 7.99 1.56 2.63 0.00 0.00 0.00 0.00 2.47 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER3d ExonRegion 0 12.10 0.00 0.62 0.87 7.15 1.40 3.56 4.71 0.80 0.95 0.00 0.00 0.00 2.02 0.00 0.53 1.26 0.00 1.21 0.00 0.00 1.59 0.00 28 E3b_E4a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 I3 Intron 0 26.21 0.33 0.00 1.65 10.90 1.49 3.67 4.62 1.80 0.56 0.00 0.00 0.00 0.00 0.00 1.94 1.08 0.00 0.00 0.00 0.00 0.00 0.00 30 I3_AR1 ActiveIntronRegion 0 19.59 0.54 0.00 2.46 8.43 2.49 3.03 6.30 1.14 0.66 0.00 0.00 0.00 0.00 0.00 2.27 1.28 0.00 0.00 0.00 0.00 0.00 0.00 31 I3_SR1 SilentIntronRegion 0 31.37 0.18 0.00 1.08 12.84 0.78 4.18 3.43 2.30 0.49 0.00 0.00 0.00 0.00 0.00 1.69 0.94 0.00 0.00 0.00 0.00 0.00 0.00 32 ER4a ExonRegion 0 22.62 0.82 1.07 2.52 14.16 4.33 4.93 3.08 3.01 0.53 0.00 0.00 0.00 2.99 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.33 0.00 33 E4_Da NovelBoundary 0 20.74 0.00 0.00 1.37 28.52 0.00 3.97 6.61 7.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E4a_E5a KnownJunction 0 13.48 0.00 1.74 0.00 0.00 7.84 5.79 0.00 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 35 I4 Intron 0 35.88 0.33 1.18 2.29 15.98 1.48 4.27 5.82 3.56 0.00 0.00 0.58 0.62 0.43 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.34 0.00 36 I4_SR1 SilentIntronRegion 0 36.33 0.33 1.19 2.32 16.18 1.50 4.33 5.89 3.61 0.00 0.00 0.58 0.63 0.44 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.34 0.00 37 E5_Aa NovelBoundary 0 56.16 0.00 1.12 6.56 20.80 10.90 13.91 10.93 3.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER5a ExonRegion 0 89.07 0.00 1.80 4.19 27.75 2.24 5.41 8.11 4.93 0.84 0.00 0.00 0.00 0.97 0.80 1.17 1.29 0.00 0.00 0.00 0.00 1.31 0.00 39 E5_Da NovelBoundary 0 37.78 0.00 1.66 5.23 4.16 2.90 3.93 3.61 1.65 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E5a_E6a KnownJunction 0 43.34 0.00 3.90 1.70 7.13 0.00 2.08 6.70 1.19 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 I5 Intron 0 23.13 0.00 0.00 0.00 16.25 0.00 0.00 3.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 I5_AR1 ActiveIntronRegion 0 23.69 0.00 0.00 0.00 16.64 0.00 0.00 3.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E6_Aa NovelBoundary 0 38.53 0.00 0.00 4.23 19.19 8.52 1.90 10.27 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER6a ExonRegion 0 51.74 0.73 2.29 2.66 20.56 5.77 8.54 8.29 3.39 2.92 0.00 0.00 0.00 1.30 0.76 1.97 0.00 0.00 0.00 0.76 0.00 0.75 0.00 45 E6_Da NovelBoundary 0 55.71 0.00 0.00 3.50 19.86 5.79 2.16 10.10 1.71 1.37 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 E6a_E7a KnownJunction 0 13.78 0.00 3.28 0.00 34.97 4.43 2.25 13.02 0.00 2.82 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 I6 Intron 0 36.85 0.00 0.28 0.63 14.43 1.70 2.04 1.98 2.27 1.05 0.00 0.00 0.60 0.41 0.00 0.92 0.00 0.00 1.47 0.33 0.00 0.00 0.00 48 I6_AR1 ActiveIntronRegion 0 38.94 0.00 0.59 1.31 12.09 2.36 1.28 2.49 2.97 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 49 I6_SR1 SilentIntronRegion 0 35.35 0.00 0.00 0.00 16.76 1.09 2.76 1.54 1.65 1.02 0.00 0.00 1.15 0.80 0.00 1.77 0.00 0.00 2.85 0.00 0.00 0.00 0.00 50 E7_Aa NovelBoundary 0 89.94 0.00 3.55 4.99 30.05 0.00 2.25 5.30 1.56 1.18 0.00 5.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 ER7a ExonRegion 0 84.12 0.09 3.85 2.30 32.57 13.81 9.93 12.67 4.50 2.41 0.00 3.15 0.00 0.97 1.70 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 E7_Da NovelBoundary 0 74.16 0.00 0.00 3.83 42.44 2.90 1.81 2.18 1.79 1.26 0.00 0.00 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E7a_E8a KnownJunction 0 99.43 0.00 2.99 3.20 37.52 5.56 7.55 9.57 6.89 3.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 E7a_E8b KnownJunction 0 48.01 0.00 0.00 0.00 20.46 0.00 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 I7 Intron 0 26.75 0.00 0.00 0.89 12.83 1.60 5.19 1.12 0.00 0.00 0.00 0.00 0.00 1.17 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 56 I7_SR1 SilentIntronRegion 0 27.22 0.00 0.00 0.90 13.05 1.63 5.28 1.14 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 57 E8_Aa NovelBoundary 0 50.53 0.00 3.43 5.56 8.40 0.00 0.00 2.30 2.72 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 ER8a ExonRegion 0 98.83 0.93 1.18 4.69 38.64 2.39 1.93 13.21 5.80 2.16 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 59 E8_Ab KnownBoundary 0 169.22 3.35 0.00 7.59 66.13 5.39 2.03 15.90 6.22 1.40 0.00 0.00 0.00 4.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.51 0.00 60 ER8b ExonRegion 0 152.12 1.24 1.39 5.51 30.23 3.62 7.71 14.30 6.56 3.57 0.00 0.99 0.91 0.94 2.29 3.55 0.00 0.00 0.00 0.00 0.00 0.16 0.00 61 E8_Da NovelBoundary 0 54.75 0.00 0.00 1.33 20.03 0.00 1.94 2.55 4.08 0.00 0.00 0.00 0.00 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 E8a_E9a KnownJunction 0 192.70 0.00 3.55 10.35 60.70 4.71 10.16 17.66 9.26 2.74 0.00 7.65 12.99 0.00 0.00 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E8a_E10a NovelJunction 0 10.67 0.00 0.00 1.43 0.00 0.00 1.68 2.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 I8 Intron 0 18.13 0.00 0.96 0.27 9.52 1.69 2.79 1.02 0.97 0.23 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.27 0.00 65 I8_SR2 SilentIntronRegion 0 19.74 0.00 1.28 0.36 11.85 1.35 3.73 1.36 1.17 0.30 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.37 0.00 66 ER9a ExonRegion 0 176.69 0.00 1.36 9.99 38.59 7.10 9.19 15.52 9.76 4.17 0.00 1.22 3.37 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 E9a_E10a KnownJunction 0 217.30 0.00 0.00 13.65 47.96 8.01 18.64 7.76 4.11 6.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 I9 Intron 0 27.65 0.16 0.72 2.08 9.48 1.30 2.40 2.03 1.01 0.13 0.30 0.00 0.00 0.21 0.00 0.94 0.26 0.72 0.00 0.00 0.00 0.00 0.00 69 I9_SR1 SilentIntronRegion 0 27.73 0.16 0.72 2.08 9.51 1.30 2.40 2.03 1.02 0.13 0.31 0.00 0.00 0.21 0.00 0.94 0.26 0.73 0.00 0.00 0.00 0.00 0.00 70 E10_Aa NovelBoundary 0 40.75 0.00 3.19 1.40 24.96 5.56 0.00 2.55 6.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71 ER10a ExonRegion 0 137.94 0.00 0.00 11.28 62.39 8.06 10.45 19.19 5.02 3.85 0.00 2.39 0.00 0.90 1.95 5.12 0.00 0.00 0.00 0.00 0.00 1.54 0.00 72 E10_Da NovelBoundary 0 10.74 5.39 0.00 1.73 20.37 8.01 0.00 2.30 1.56 1.24 0.00 5.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 E10a_E11b KnownJunction 0 123.43 0.00 1.83 8.56 64.35 2.27 4.33 17.46 5.99 3.20 0.00 6.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75 I10 Intron 0 42.18 0.69 0.82 2.75 12.35 2.06 2.24 4.06 3.11 0.96 0.00 0.34 0.43 0.00 0.00 1.34 0.00 0.00 1.08 0.00 0.00 0.00 0.33 76 I10_SR1 SilentIntronRegion 0 30.12 0.30 0.27 2.41 12.30 1.90 2.36 4.96 3.82 1.27 0.00 0.45 0.57 0.00 0.00 1.32 0.00 0.00 1.42 0.00 0.00 0.00 0.44 77 I10_AR1 ActiveIntronRegion 0 81.73 1.94 2.61 3.88 12.75 2.62 1.89 1.23 0.88 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78 E11_Aa NovelBoundary 0 139.80 0.00 0.00 9.52 32.43 0.00 2.12 9.86 2.69 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79 ER11a ExonRegion 0 97.06 0.00 0.00 3.46 14.40 0.03 4.68 5.36 1.24 0.68 0.00 0.06 0.00 0.71 0.00 0.04 0.00 0.00 0.00 0.00 0.00 1.53 0.00 80 E11_Ab KnownBoundary 0 154.25 0.00 0.00 9.12 37.52 0.00 3.97 6.78 1.36 3.25 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81 ER11b ExonRegion 0 137.24 0.77 2.25 10.04 65.90 6.09 12.97 23.67 8.24 5.02 0.00 0.26 0.00 0.14 0.00 4.49 0.00 0.00 0.00 0.00 0.00 0.77 1.11 82 E11_Da NovelBoundary 0 77.05 0.00 0.00 0.00 22.41 5.56 3.36 1.97 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83 E11a_E12a KnownJunction 0 109.06 0.00 1.39 18.05 69.52 36.68 15.19 15.81 12.44 7.44 0.00 0.00 0.00 0.00 0.00 11.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84 I11 Intron 0 43.89 1.14 0.00 1.14 13.50 2.06 0.74 7.22 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85 I11_AR1 ActiveIntronRegion 0 44.85 1.17 0.00 1.16 13.77 2.10 0.76 7.36 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86 E12_Aa NovelBoundary 0 78.31 0.00 0.00 3.53 3.31 0.00 4.33 6.70 3.24 6.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87 ER12a ExonRegion 0 156.48 0.28 3.77 13.24 34.06 4.63 8.11 15.21 6.19 3.30 0.27 1.00 1.62 0.75 0.00 3.54 0.00 0.00 0.00 0.00 0.00 0.56 0.00 88 ER12b ExonRegion 0 4.94 0.00 0.00 1.36 4.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 89 ER12c ExonRegion 0 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00