Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF276 Gene 0 112.67 32.07 153.13 43.05 53.58 31.26 45.45 58.35 40.45 56.86 60.32 23.59 24.51 95.88 91.37 79.88 63.56 96.03 49.76 47.55 49.63 30.58 43.62 2 289816 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 446326 Transcript 1 88.68 27.50 144.38 45.02 15.87 29.93 28.84 39.68 34.29 55.44 49.96 13.65 8.28 118.67 66.63 70.15 50.68 79.22 36.52 51.58 47.38 45.50 46.01 4 443381 Transcript 0 14.85 3.67 21.43 5.21 0.93 3.33 1.24 8.45 9.78 11.99 14.17 0.60 3.26 31.76 18.08 26.51 21.67 24.34 6.80 7.18 14.48 5.49 10.46 5 ER1a ExonRegion 0 1.30 0.71 22.47 4.59 0.47 2.55 0.92 7.36 7.22 15.94 14.22 4.40 3.37 26.57 16.63 16.62 23.20 19.81 21.08 10.16 44.92 8.21 15.43 6 E1_Da NovelBoundary 0 0.00 0.00 27.62 3.86 0.00 7.89 6.36 13.35 8.80 12.87 12.90 0.00 0.00 18.31 14.34 11.36 12.90 31.17 13.46 6.33 34.29 8.82 25.35 7 E1a_E3a KnownJunction 0 3.78 0.00 1.83 5.69 0.00 5.22 0.00 4.23 3.10 6.63 10.16 0.00 0.00 31.61 15.33 7.95 3.55 24.79 18.64 9.52 10.93 5.27 15.02 8 E2_Aa NovelBoundary 1 2.82 2.70 8.16 2.03 0.00 2.38 4.24 0.00 1.79 3.98 2.47 0.00 0.00 27.02 0.00 7.86 42.54 4.15 11.39 5.94 5.81 3.12 10.67 9 ER2a ExonRegion 0 6.59 1.03 13.60 0.94 1.85 1.78 2.48 7.66 5.99 12.68 15.92 1.20 6.52 34.92 22.07 20.30 25.57 19.46 9.00 8.55 21.43 2.21 9.83 10 E2_Da NovelBoundary 0 0.00 0.00 12.36 2.96 4.24 13.06 2.25 6.70 6.08 15.66 13.90 0.00 0.00 8.89 13.35 16.66 17.30 28.35 3.76 11.25 2.47 2.33 8.37 11 E2a_E3a KnownJunction 0 23.12 6.31 29.27 9.49 0.00 4.88 0.00 9.24 13.57 11.31 12.42 0.00 0.00 28.61 14.09 32.73 17.77 29.22 4.61 5.82 7.54 8.76 11.10 12 I2 Intron 1 20.34 5.31 56.50 7.88 6.77 7.27 9.60 10.42 9.15 14.98 15.48 1.80 0.56 39.73 24.85 29.31 27.27 37.62 27.12 12.91 20.23 12.82 17.58 13 I2_SR1 SilentIntronRegion 1 11.92 3.17 36.96 6.29 3.87 4.03 4.03 7.93 5.40 10.96 13.34 1.58 0.00 31.54 19.34 23.82 24.95 28.43 21.77 11.62 15.69 10.39 11.56 14 I2_AR1 ActiveIntronRegion 1 31.71 8.21 82.92 10.03 10.68 11.63 17.10 13.80 14.22 20.43 18.41 2.11 1.31 50.85 32.33 36.78 30.49 50.09 34.40 14.70 26.41 16.12 25.71 15 E3_Aa NovelBoundary 0 29.49 0.00 142.46 43.02 3.99 15.16 13.51 25.55 10.79 43.70 23.64 6.30 6.17 47.21 34.61 41.27 59.47 89.75 48.47 17.71 41.76 49.54 59.84 16 ER3a ExonRegion 0 46.71 16.46 196.15 34.90 25.60 20.65 28.02 39.29 38.29 74.35 78.70 13.52 13.07 114.87 99.34 85.79 86.46 91.88 58.37 48.75 72.13 39.84 53.24 17 E3_Da NovelBoundary 0 27.49 0.00 6.74 1.90 11.63 22.37 1.81 4.07 6.92 2.98 9.48 6.30 0.00 26.43 4.45 27.17 21.88 15.55 17.88 8.25 13.90 5.63 8.11 18 E3a_E4a KnownJunction 0 36.82 22.04 165.58 26.80 14.94 19.48 22.30 16.59 26.59 58.94 88.13 23.71 20.45 121.02 123.99 89.98 72.09 85.35 36.80 35.67 81.11 7.72 50.62 19 I3 Intron 0 16.08 2.06 8.02 4.46 9.94 4.65 7.15 13.05 12.74 5.77 4.57 1.81 5.22 8.86 16.57 13.55 6.69 12.41 12.37 6.47 13.40 7.39 8.93 20 I3_AR1 ActiveIntronRegion 0 17.27 1.90 8.63 5.03 11.23 4.87 7.80 13.77 14.22 6.28 4.78 1.57 4.81 9.83 17.29 14.69 7.44 13.58 13.71 6.88 14.31 7.80 9.72 21 E4_Aa NovelBoundary 0 20.52 0.00 13.01 3.03 3.31 0.00 3.93 8.63 7.44 8.73 0.00 0.00 13.64 14.72 34.24 31.10 3.83 19.52 13.37 6.39 17.54 10.65 16.05 22 ER4a ExonRegion 0 29.09 17.26 183.23 20.88 17.02 18.92 22.82 25.56 31.98 51.24 71.60 17.69 27.54 106.22 93.21 75.95 55.76 77.64 48.12 37.48 83.60 18.97 42.49 23 E4_Da NovelBoundary 0 3.11 3.09 9.34 7.69 12.56 15.67 18.24 11.54 22.40 8.54 11.95 6.30 0.00 28.90 37.70 35.20 27.77 25.49 9.22 5.75 17.24 7.90 11.78 24 E4a_E5a KnownJunction 0 60.16 21.18 174.54 30.40 35.57 13.91 20.18 38.36 32.06 47.36 71.39 5.85 28.08 91.88 60.33 75.88 56.10 90.12 63.34 44.74 70.80 31.78 43.88 25 E5_Aa NovelBoundary 0 6.37 6.25 19.28 7.36 8.32 5.62 13.78 20.37 17.01 11.93 2.26 0.00 6.01 14.36 36.47 19.82 17.67 24.79 4.80 17.51 17.67 8.76 7.00 26 ER5a ExonRegion 1 81.46 18.42 179.82 33.81 34.96 26.44 34.52 55.96 42.82 64.50 73.61 9.31 6.83 132.04 113.71 93.81 75.88 125.50 46.59 49.66 84.30 31.13 53.43 27 E5a_E6a KnownJunction 0 90.16 26.90 185.45 48.55 60.53 33.11 38.16 62.51 40.68 61.30 82.97 17.56 6.66 143.92 112.12 114.07 81.16 108.86 68.24 52.80 94.64 34.11 85.79 28 ER6a ExonRegion 1 111.18 30.59 197.10 59.97 57.78 60.20 45.44 72.04 50.22 80.72 100.31 18.24 12.67 165.76 139.51 150.50 105.14 118.69 59.30 57.90 87.68 53.11 87.85 29 E6_Da KnownBoundary 0 87.50 9.34 89.88 31.23 69.78 67.80 50.70 57.71 28.56 54.88 59.96 5.70 18.99 108.25 94.44 102.20 44.69 46.47 42.07 21.41 31.51 30.62 59.07 30 E6a_E7a KnownJunction 0 88.68 27.50 144.38 45.02 15.87 29.93 28.84 39.68 34.29 55.44 49.96 13.65 8.28 118.67 66.63 70.15 50.68 79.22 36.52 51.58 47.38 45.50 46.01 31 ER6b ExonRegion 0 53.51 10.36 85.81 17.76 30.35 47.11 26.93 40.29 18.37 46.59 49.17 15.02 19.79 88.26 75.89 79.60 45.80 56.24 58.23 20.61 28.30 18.75 49.01 32 E6_Db NovelBoundary 0 26.97 21.64 29.30 10.12 30.73 25.61 31.75 37.46 18.43 38.98 13.95 0.00 6.82 29.55 60.08 42.38 17.77 29.51 18.17 25.31 19.58 5.82 24.58 33 E6b_E7a KnownJunction 0 75.64 9.87 100.56 10.22 26.74 32.08 23.58 37.42 19.33 42.58 49.80 31.51 40.74 88.70 70.59 82.80 35.06 65.83 66.64 24.67 28.60 20.39 57.02 34 E7_Aa NovelBoundary 0 13.48 5.92 15.61 11.52 32.09 5.79 3.71 14.50 10.79 11.26 4.26 5.70 6.82 9.30 4.45 8.54 22.44 7.01 12.89 2.88 5.56 2.45 3.59 35 ER7a ExonRegion 0 163.05 30.38 238.22 85.70 76.00 48.16 50.55 103.79 63.76 110.57 117.06 64.58 37.41 185.92 158.84 141.57 140.84 106.73 80.09 64.16 136.68 68.43 96.77 36 E7_Da NovelBoundary 0 13.56 0.00 15.55 5.06 6.79 10.90 16.38 4.44 15.42 15.34 22.58 6.00 0.00 17.42 8.90 18.63 12.81 46.22 12.99 26.59 21.13 5.20 7.43 37 E7a_E8a KnownJunction 1 207.44 32.17 272.70 89.73 86.08 39.30 66.24 106.09 57.32 94.31 126.82 56.87 13.15 153.39 125.22 133.98 128.28 41.79 56.94 42.89 121.15 72.68 75.63 38 I7 Intron 0 48.27 15.40 24.42 13.84 25.91 19.23 25.95 24.02 14.18 31.81 24.43 10.01 11.28 36.16 35.54 37.50 24.59 86.65 25.48 41.93 23.75 10.86 17.90 39 I7_SR1 SilentIntronRegion 0 9.89 4.83 4.05 5.30 4.65 14.38 7.51 3.70 4.04 5.65 8.74 2.07 2.24 19.83 16.85 7.60 13.62 23.56 8.72 11.91 13.72 8.17 11.30 40 I7_AR1 ActiveIntronRegion 1 30.72 15.21 24.52 12.80 22.10 16.55 21.94 22.52 13.95 28.28 24.10 7.51 6.69 36.81 34.05 41.98 28.24 88.36 28.34 41.76 25.40 8.26 15.62 41 I7_SR2 SilentIntronRegion 1 43.37 20.58 32.00 23.84 28.83 22.92 29.93 41.51 18.05 40.97 35.60 8.15 7.86 45.85 43.82 51.64 33.01 125.30 35.95 54.02 28.41 13.67 11.07 42 I7_AR2 ActiveIntronRegion 1 26.49 12.60 27.27 8.32 22.43 17.13 23.89 22.85 13.09 35.77 24.76 4.83 6.68 37.47 38.48 26.11 23.75 85.85 24.74 42.26 20.22 8.09 22.27 43 I7_SR3 SilentIntronRegion 0 111.52 19.51 25.89 20.15 38.49 26.51 38.94 29.12 18.43 40.60 25.86 21.29 25.95 34.74 39.74 45.14 19.64 96.63 23.78 45.47 26.59 17.39 23.18 44 I7_AR3 ActiveIntronRegion 0 56.23 18.74 22.16 11.99 49.83 15.55 29.05 15.51 6.78 22.87 24.34 18.01 23.52 44.56 26.49 36.70 25.40 44.85 19.34 57.60 17.89 13.53 12.13 45 E8_Aa NovelBoundary 0 224.78 18.02 39.56 22.18 85.14 34.70 63.86 38.16 21.47 39.94 43.12 17.56 25.49 33.67 13.35 33.41 25.06 137.34 20.33 35.54 13.65 7.47 31.16 46 ER8a ExonRegion 0 190.30 38.66 243.52 68.91 79.81 63.01 80.86 104.44 63.17 92.54 145.89 66.81 48.51 171.22 121.75 140.52 135.07 105.89 99.00 59.88 127.62 75.31 103.36 47 E8_Da NovelBoundary 0 97.57 20.33 79.68 22.34 52.80 40.66 29.59 50.93 27.60 73.90 40.64 36.61 6.66 53.03 63.91 48.19 26.18 85.15 4.52 59.83 24.90 11.39 28.08 48 E8a_E9a KnownJunction 0 178.55 17.69 207.21 47.41 39.30 21.24 44.87 96.81 51.82 68.95 134.35 37.51 46.75 122.14 125.60 69.90 102.95 113.58 81.70 30.10 73.82 66.19 58.05 49 I8 Intron 0 10.95 1.50 0.00 0.00 1.98 4.07 7.83 0.00 0.00 0.00 5.71 7.53 2.85 15.25 20.56 30.76 9.76 2.73 7.06 15.73 13.03 7.70 6.51 50 I8_AR1 ActiveIntronRegion 0 11.25 1.55 0.00 0.00 2.04 4.19 8.00 0.00 0.00 0.00 5.89 7.75 2.94 15.68 21.09 31.67 10.05 2.81 7.23 16.16 13.39 7.90 6.71 51 E9_Aa NovelBoundary 0 121.95 13.62 53.96 33.36 39.56 13.80 29.46 51.10 34.17 67.88 19.64 30.91 6.82 47.91 48.21 70.32 60.50 127.01 36.14 51.65 33.42 25.23 40.46 52 ER9a ExonRegion 0 191.63 39.25 277.50 82.31 55.35 49.27 54.21 91.79 58.52 82.68 120.04 36.29 58.93 186.54 182.89 143.91 125.35 128.61 116.01 65.34 99.66 73.31 88.22 53 E9_Da NovelBoundary 0 33.86 12.37 52.72 16.41 12.05 2.38 35.77 41.98 15.22 56.11 16.16 20.26 0.00 6.71 26.95 14.87 20.29 60.36 3.48 51.52 8.71 9.06 16.48 54 E9a_E10a KnownJunction 0 195.74 54.86 297.36 103.12 35.99 72.40 34.58 99.23 71.04 95.84 135.09 50.27 73.05 196.42 266.02 162.44 107.81 120.38 88.19 99.71 99.03 60.62 81.78 55 I9 Intron 1 37.47 13.14 38.23 13.70 13.53 14.17 26.23 36.19 22.21 40.55 16.82 7.97 1.09 17.69 20.55 27.54 18.06 71.48 21.03 24.21 16.10 13.47 12.79 56 I9_AR1 ActiveIntronRegion 1 37.67 13.22 38.44 13.77 13.61 14.25 26.37 36.38 22.33 40.77 16.91 8.00 1.09 17.79 20.66 27.70 18.16 71.87 21.15 24.35 16.18 13.54 12.86 57 E10_Aa NovelBoundary 0 90.02 20.72 57.98 23.17 16.04 26.92 40.54 49.12 32.00 45.40 12.90 0.00 0.00 18.95 41.16 39.99 32.26 66.04 8.75 42.31 17.30 19.59 20.57 58 ER10a ExonRegion 0 207.35 48.24 316.33 95.68 65.26 68.27 79.76 140.55 83.72 113.29 111.86 69.01 51.23 200.29 184.35 167.85 124.29 171.70 107.44 86.24 115.96 78.36 97.46 59 E10_Da NovelBoundary 0 9.63 6.18 15.61 19.08 44.31 0.00 24.38 18.03 4.46 25.49 9.00 0.00 0.00 4.77 9.39 8.46 0.00 31.42 12.89 15.53 2.72 0.00 4.18 60 E10a_E11a KnownJunction 0 278.05 61.57 379.08 103.52 101.70 63.32 73.62 99.32 81.54 100.95 148.30 25.21 41.88 202.90 168.61 183.37 113.60 217.42 70.78 81.75 89.95 85.11 83.06 61 I10 Intron 0 35.02 32.05 38.40 23.69 50.07 18.20 48.28 30.37 18.90 50.27 25.07 24.86 17.62 27.17 36.20 52.95 28.88 71.01 24.98 38.33 5.47 5.08 9.97 62 I10_SR1 SilentIntronRegion 0 32.45 34.13 32.45 19.63 43.59 16.73 46.43 28.02 18.46 50.28 24.79 25.78 18.92 23.91 37.00 39.81 22.48 55.58 19.98 37.12 5.23 4.69 6.07 63 I10_AR1 ActiveIntronRegion 0 42.91 27.70 55.24 35.07 68.66 22.65 54.73 37.53 20.70 51.97 26.63 23.31 14.86 36.59 35.36 88.97 46.54 113.62 38.85 42.80 6.28 6.27 20.47 64 E11_Aa NovelBoundary 1 60.90 71.63 132.90 45.48 116.81 35.55 62.09 80.01 41.55 98.85 107.87 24.16 19.32 60.86 151.31 87.58 83.59 174.60 40.00 76.76 14.64 8.51 7.85 65 ER11a ExonRegion 0 122.88 27.33 277.18 86.33 33.74 39.67 36.01 84.59 63.56 81.34 84.83 13.46 34.42 121.83 118.43 88.39 78.99 154.69 63.87 53.30 81.07 56.51 51.57 66 E11_Da NovelBoundary 1 203.44 87.62 103.04 59.80 36.76 45.20 85.45 67.32 36.11 94.23 96.60 31.06 6.33 107.54 191.24 132.36 92.10 127.34 44.80 105.08 20.94 13.78 8.37 67 E11a_E12a KnownJunction 0 322.72 67.36 366.60 133.95 74.02 46.96 43.85 111.93 83.19 113.65 111.13 38.26 100.32 200.54 214.11 160.13 109.30 191.89 110.03 82.39 123.74 83.71 125.23 68 E12_Aa NovelBoundary 1 144.03 43.08 150.97 60.17 45.25 21.86 65.76 70.32 49.97 91.01 141.56 20.26 7.79 124.67 162.19 127.32 92.75 150.89 12.14 128.92 5.93 14.14 13.06 69 ER12a ExonRegion 0 138.56 41.92 152.74 47.35 69.61 34.86 55.89 63.78 43.15 56.04 55.95 26.81 29.16 88.10 91.58 79.47 57.84 101.90 49.29 52.34 34.25 28.14 39.59 70 ER12b ExonRegion 0 7.79 6.66 4.12 0.37 9.85 0.00 8.00 4.79 3.14 5.94 0.70 7.67 0.00 11.89 7.78 9.46 3.30 5.38 3.47 0.29 5.41 4.74 2.27