Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ST3GAL2 Gene 0 28.37 18.69 61.64 20.02 24.24 28.03 25.37 44.76 41.48 65.43 117.26 21.72 37.28 135.05 187.41 87.02 155.83 74.31 44.77 60.26 85.39 74.01 100.32 2 342907 Transcript 0 13.87 13.24 15.22 8.09 16.80 7.31 6.04 14.07 13.04 14.38 12.91 14.56 9.30 24.52 48.59 21.91 32.64 10.63 8.84 16.10 13.44 9.73 28.14 3 393640 Transcript 0 9.83 8.86 13.27 5.09 8.81 6.61 8.76 15.22 11.79 16.83 8.59 2.34 7.81 10.93 35.97 26.12 30.90 14.98 11.39 38.44 11.13 4.07 22.15 4 ER1a ExonRegion 0 3.42 1.95 1.20 1.13 0.71 2.48 2.35 3.90 1.82 2.58 7.75 2.60 1.61 8.70 19.65 8.79 14.76 0.32 2.09 5.14 13.36 4.27 8.75 5 E1a_E2b KnownJunction 0 3.78 3.09 12.54 6.19 3.99 5.22 0.00 15.48 12.38 9.59 11.69 0.00 5.84 38.08 50.68 15.89 30.39 9.37 8.38 14.51 13.96 13.35 46.18 6 I1 Intron 1 20.68 11.86 22.81 9.85 16.78 6.77 13.84 17.61 16.53 17.99 9.41 6.39 13.01 10.91 44.63 34.01 42.43 26.94 16.96 38.44 9.77 3.97 25.84 7 I1_SR1 SilentIntronRegion 0 11.14 7.27 17.61 6.84 12.33 5.22 10.92 11.74 12.26 12.58 6.88 3.93 7.12 8.23 36.73 28.92 38.40 21.79 16.37 30.30 7.58 2.25 24.77 8 I1_AR1 ActiveIntronRegion 0 8.50 6.91 18.48 7.75 6.96 7.10 9.25 16.14 16.65 15.76 5.79 0.00 3.58 7.77 26.60 30.25 32.10 22.20 10.83 23.35 8.30 2.21 17.08 9 I1_SR2 SilentIntronRegion 1 9.44 8.08 22.59 8.12 15.59 6.32 11.80 19.14 16.35 17.91 13.41 2.96 5.65 9.13 40.29 36.11 36.71 29.58 15.74 30.20 8.38 4.06 22.78 10 I1_AR2 ActiveIntronRegion 1 21.03 12.29 40.12 8.83 20.37 11.70 18.19 18.67 24.42 23.11 7.02 12.46 7.23 12.95 51.66 36.49 49.68 30.35 26.97 38.83 14.28 2.77 31.64 11 I1_SR3 SilentIntronRegion 1 20.71 8.50 22.30 10.08 19.51 8.14 13.68 15.66 15.22 17.03 6.56 6.08 12.30 9.62 44.30 33.04 31.89 23.80 13.27 34.26 9.50 2.65 22.83 12 I1_AR3 ActiveIntronRegion 1 24.85 12.98 34.07 14.88 17.78 11.72 14.59 28.73 24.80 28.36 12.51 5.48 17.28 13.04 52.86 40.49 59.03 40.11 25.51 58.35 10.73 4.89 33.71 13 I1_SR4 SilentIntronRegion 1 18.89 6.22 13.61 7.73 5.47 4.44 12.31 13.69 10.81 10.12 7.30 4.10 4.12 6.46 44.29 32.71 35.71 24.43 15.23 44.53 6.52 3.06 17.66 14 I1_AR5 ActiveIntronRegion 1 33.32 13.61 22.65 8.41 14.05 6.77 18.37 21.01 16.89 25.34 10.58 12.53 15.51 9.57 60.57 45.36 51.67 44.35 17.23 69.40 12.92 6.83 24.25 15 I1_AR6 ActiveIntronRegion 1 20.44 15.99 28.90 11.00 11.81 9.74 16.71 23.07 20.53 32.98 2.87 1.19 13.75 5.94 60.23 46.53 73.99 44.41 18.23 67.86 15.20 3.52 25.62 16 I1_SR5 SilentIntronRegion 1 16.12 16.90 23.99 9.67 11.21 4.25 14.04 12.73 17.24 23.41 11.75 2.21 9.38 11.61 60.70 45.76 53.74 41.12 17.37 64.41 11.97 3.36 32.64 17 I1_AR7 ActiveIntronRegion 1 39.77 16.36 27.32 14.86 24.01 10.92 19.99 30.77 25.57 28.69 16.02 13.41 29.65 14.93 64.95 45.71 68.05 44.43 26.06 61.15 14.59 6.97 41.05 18 I1_SR6 SilentIntronRegion 0 16.35 13.35 25.19 9.32 13.01 4.06 11.64 15.26 17.89 21.40 11.87 6.69 9.86 11.99 37.53 38.24 45.95 38.70 17.46 46.22 13.76 5.65 36.24 19 I1_AR8 ActiveIntronRegion 1 8.77 9.59 18.56 4.09 8.03 1.83 10.02 13.58 10.06 13.76 14.08 4.33 4.69 7.42 50.56 53.50 49.98 24.28 9.56 34.04 19.20 7.44 28.53 20 I1_AR9 ActiveIntronRegion 1 11.49 7.70 14.88 4.58 5.92 8.12 14.19 15.56 12.88 14.75 19.74 0.00 4.69 4.99 52.22 51.16 48.57 25.74 10.92 36.78 11.81 9.38 28.11 21 I1_AR10 ActiveIntronRegion 1 7.87 8.79 23.74 6.14 10.42 7.63 7.43 19.39 18.92 18.39 13.88 2.48 9.83 10.82 40.22 36.64 40.38 36.23 16.32 43.71 11.76 5.39 28.63 22 I1_SR7 SilentIntronRegion 1 15.60 12.51 24.27 12.04 19.32 7.97 16.57 18.63 16.99 17.94 8.36 8.13 16.86 11.38 44.79 35.70 41.82 26.44 14.49 36.10 9.48 4.33 23.84 23 I1_AR11 ActiveIntronRegion 1 97.63 39.23 51.35 22.95 49.26 8.70 24.71 34.98 30.97 34.45 11.17 18.42 36.71 13.06 72.89 47.03 50.53 23.66 19.94 45.95 10.59 6.39 29.86 24 I1_SR8 SilentIntronRegion 1 53.96 18.92 17.98 9.17 34.23 7.91 19.81 15.82 11.49 12.68 6.55 10.36 23.92 7.25 39.18 29.58 26.09 11.88 13.05 23.98 4.95 5.27 16.60 25 I1_AR13 ActiveIntronRegion 0 7.14 9.20 21.14 8.23 13.64 3.23 8.65 14.70 12.21 16.12 8.88 3.32 9.38 6.32 30.52 20.57 30.57 19.79 10.57 33.58 7.56 3.45 14.68 26 I1_SR10 SilentIntronRegion 1 16.83 16.04 21.16 10.88 10.62 4.84 12.68 21.43 17.28 16.52 8.95 4.12 11.39 11.99 48.85 25.74 41.83 22.26 15.41 41.08 10.79 3.73 22.75 27 I1_AR14 ActiveIntronRegion 0 13.49 11.98 27.66 11.37 13.08 9.55 17.06 22.84 27.66 35.62 38.27 9.94 21.92 50.28 76.59 68.48 92.67 58.30 38.50 69.25 24.26 13.61 36.58 28 I1_SR11 SilentIntronRegion 0 18.07 8.79 6.65 3.24 12.90 4.29 13.26 12.84 6.55 14.15 8.94 2.63 15.33 8.90 34.45 30.78 33.72 10.82 8.53 37.61 7.28 1.64 29.37 29 E2_Aa NovelBoundary 0 31.04 9.01 24.30 5.16 11.46 4.94 2.16 20.21 16.12 13.48 5.00 14.10 6.17 17.01 37.58 27.09 60.96 14.51 25.88 41.55 12.11 0.00 19.46 30 ER2a ExonRegion 0 9.83 8.86 13.27 5.09 8.81 6.61 8.76 15.22 11.79 16.83 8.59 2.34 7.81 10.93 35.97 26.12 30.90 14.98 11.39 38.44 11.13 4.07 22.15 31 E2_Ab KnownBoundary 0 3.41 8.02 10.50 7.89 10.36 7.27 7.82 8.83 13.57 15.77 7.37 0.00 0.00 23.78 14.96 48.79 25.25 13.43 13.74 37.39 21.00 8.21 23.13 32 ER2b ExonRegion 0 21.65 24.66 108.93 30.93 30.23 41.95 37.93 74.27 77.08 123.39 224.87 28.69 50.72 256.25 335.02 156.43 282.92 156.22 75.81 105.97 168.42 130.76 174.01 33 E2_Da NovelBoundary 0 0.00 0.00 10.05 5.43 0.00 0.00 3.93 7.15 7.78 1.67 2.47 0.00 0.00 2.47 0.00 4.36 8.42 10.28 18.07 2.94 5.07 0.00 12.89 34 E2a_E3a KnownJunction 0 65.05 48.02 204.93 55.30 49.75 63.09 58.12 131.48 133.16 189.59 327.87 121.09 284.88 262.47 674.70 313.85 438.52 256.22 142.03 152.63 224.62 232.56 344.35 35 ER3a ExonRegion 0 24.29 30.13 152.05 47.33 35.38 60.61 43.72 105.02 91.56 157.40 278.12 57.22 96.75 301.81 462.39 213.23 350.15 177.21 113.36 125.02 192.29 193.76 219.28 36 E3a_E4a KnownJunction 0 48.60 37.49 201.00 65.69 46.86 50.26 37.71 143.35 109.49 181.94 267.28 60.02 114.93 300.14 494.72 262.07 364.19 266.26 159.44 99.07 165.69 171.45 249.43 37 E3a_E5a NovelJunction 0 3.78 0.00 3.55 0.00 0.00 0.00 1.81 0.00 1.48 0.00 2.68 0.00 6.82 9.89 15.33 4.10 4.58 5.93 0.00 0.00 0.00 5.33 0.00 38 E4_Aa NovelBoundary 0 13.93 3.35 5.82 9.26 7.64 4.32 6.23 3.90 5.03 14.75 0.00 0.00 13.80 2.24 0.00 12.05 4.11 2.24 0.00 0.00 9.39 0.00 15.28 39 ER4a ExonRegion 0 55.81 45.17 151.23 49.03 61.47 70.82 57.53 103.00 92.91 150.61 287.91 67.03 126.50 315.12 470.62 200.16 396.35 182.29 125.68 134.55 208.81 199.80 230.71 40 E4a_E5a KnownJunction 0 40.90 21.05 117.00 73.62 42.28 81.15 45.18 75.17 88.71 118.97 266.49 48.62 84.90 313.38 402.87 172.60 326.13 135.59 120.29 132.24 166.80 144.33 157.07 41 I4 Intron 0 14.59 4.50 5.96 2.99 8.03 4.54 8.78 7.59 6.10 7.92 6.41 3.20 6.03 7.03 17.20 12.04 15.98 11.22 6.71 9.52 6.26 7.35 17.31 42 I4_SR1 SilentIntronRegion 0 14.62 4.50 5.97 3.00 8.04 4.55 8.80 7.61 6.12 7.93 6.42 3.21 6.04 7.04 17.24 12.07 16.01 11.24 6.72 9.54 6.27 7.36 17.35 43 E5_Aa NovelBoundary 0 34.08 13.68 14.84 2.73 39.64 24.42 39.00 6.82 7.61 11.09 12.58 0.00 27.27 12.13 57.48 0.00 32.26 13.43 20.89 15.15 12.23 15.25 38.93 44 ER5a ExonRegion 0 44.58 40.76 169.85 71.49 55.03 79.81 40.12 100.06 97.90 144.41 308.17 51.77 101.04 352.58 391.35 267.75 405.79 212.01 150.27 153.24 201.30 183.85 270.11 45 E5_Da NovelBoundary 0 13.71 9.27 8.46 1.83 15.53 35.26 6.67 2.55 7.35 9.21 0.00 0.00 6.49 2.24 43.39 35.12 12.90 8.58 19.58 8.88 2.59 0.00 15.71 46 E5a_E6a KnownJunction 0 80.24 62.49 172.14 47.38 89.13 114.14 61.25 109.09 92.53 137.05 398.94 56.42 144.15 371.54 526.98 323.85 484.15 175.02 165.75 166.57 205.78 224.18 329.67 47 E6_Aa NovelBoundary 0 14.30 0.00 14.34 5.96 21.31 8.12 12.81 17.33 6.68 5.59 2.32 0.00 0.00 7.71 26.70 16.66 18.89 15.17 4.80 5.75 3.15 3.12 16.90 48 ER6a ExonRegion 0 45.82 24.01 149.24 41.74 45.76 61.31 54.82 113.57 95.17 150.79 270.93 63.39 110.72 325.54 448.63 163.10 379.30 132.11 93.07 133.24 169.02 172.27 225.93 49 E6a_E7a KnownJunction 1 65.05 36.31 143.14 53.01 44.65 89.32 67.75 119.53 85.21 148.41 253.75 49.22 181.32 287.54 440.57 154.66 387.94 117.19 43.67 128.92 168.22 139.49 201.71 50 ER7a ExonRegion 0 39.22 16.76 41.06 15.47 23.38 23.44 21.91 30.94 26.14 40.06 78.64 18.33 29.39 93.65 126.26 55.71 102.99 39.16 29.82 32.19 54.70 53.94 73.18 51 E7_Da KnownBoundary 1 57.20 58.87 70.13 35.06 67.40 24.99 27.51 39.97 50.17 65.60 25.95 67.82 26.95 38.97 138.82 69.55 55.45 40.79 22.40 50.30 37.07 33.68 60.69 52 ER7b ExonRegion 1 34.41 34.69 31.91 16.96 45.72 14.23 15.77 22.82 24.93 30.97 19.30 41.07 20.44 26.77 75.43 41.06 52.77 22.20 16.06 28.66 13.00 11.58 29.49 53 IG8 Intergenic 0 37.98 43.80 63.13 31.63 72.73 32.96 36.22 50.81 36.15 55.29 19.38 21.60 20.95 33.72 84.73 56.46 42.35 37.78 29.23 34.82 14.68 31.06 59.22 54 IG8_SR3 SilentIntergenicRegion 0 44.37 64.45 86.89 32.85 64.63 25.14 31.79 56.61 39.65 63.60 23.14 23.05 21.93 39.09 110.27 66.40 51.48 49.38 29.57 41.05 15.34 37.64 70.09 55 IG8_AR1 ActiveIntergenicRegion 0 40.68 37.47 61.31 38.84 95.06 49.03 48.95 60.62 44.07 64.88 21.23 23.97 23.97 38.52 85.83 63.34 47.32 38.63 36.82 37.55 18.97 33.07 66.80 56 IG8_SR1 SilentIntergenicRegion 0 32.36 16.71 18.97 23.37 63.01 20.05 23.90 22.54 12.11 18.72 11.66 23.93 24.21 12.68 30.60 22.82 5.43 12.10 15.48 30.29 2.42 14.85 19.26