Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZDHHC7 Gene 0 32.02 20.49 25.26 17.35 26.19 34.82 25.31 25.99 36.46 46.42 57.54 39.16 36.72 93.39 49.55 88.99 63.92 60.12 27.70 31.37 110.87 62.12 58.42 2 344861 Transcript 0 19.40 2.09 6.26 2.60 9.15 2.97 2.84 4.33 8.82 8.77 39.78 22.55 48.71 119.86 54.56 82.44 70.40 6.38 1.45 5.45 70.22 31.37 40.27 3 313732 Transcript 0 8.10 34.73 18.82 12.81 21.36 22.29 16.63 19.26 26.05 41.41 27.10 28.31 0.01 33.75 34.87 32.81 35.03 33.49 29.37 34.82 85.62 38.51 45.74 4 ER1a ExonRegion 0 4.04 2.25 1.64 0.33 2.10 12.74 4.72 5.36 5.13 4.05 23.49 2.01 3.06 19.55 8.55 42.30 28.53 30.15 19.20 10.04 48.81 6.98 34.52 5 E1a_E2a KnownJunction 0 28.38 14.80 6.65 3.66 3.82 7.72 26.45 19.84 24.48 29.06 47.01 6.30 6.82 95.47 46.97 149.88 89.95 104.79 48.10 52.99 105.58 68.52 67.86 6 ER2a ExonRegion 0 26.04 21.14 27.61 13.99 24.61 39.70 29.64 28.16 46.89 54.32 89.50 51.70 37.47 115.95 68.28 182.58 115.22 109.60 71.26 65.64 194.77 84.48 153.42 7 E2a_E3a KnownJunction 0 9.85 17.63 39.47 15.22 22.75 81.54 44.34 37.91 87.64 90.31 109.19 61.82 52.43 147.86 82.70 109.20 123.33 86.10 31.34 68.90 219.19 90.81 83.66 8 ER3a ExonRegion 0 26.71 29.68 46.79 33.04 33.53 48.70 38.37 63.65 99.25 129.08 154.93 105.95 114.79 247.13 135.78 220.90 178.49 209.16 62.58 103.61 342.96 158.64 145.27 9 E3_Da NovelBoundary 0 6.67 24.80 4.52 13.82 15.28 2.90 13.20 10.68 5.50 14.08 4.53 6.30 13.80 14.36 18.67 24.10 19.07 26.82 0.00 11.31 25.82 15.00 20.23 10 E3a_E4a KnownJunction 0 26.15 3.16 2.66 1.30 8.66 2.44 0.00 7.60 10.97 6.93 32.59 25.66 67.53 115.55 77.76 102.11 80.04 1.62 0.00 3.26 75.00 34.60 47.89 11 E3a_E5a KnownJunction 0 14.08 69.20 36.31 25.24 42.44 44.58 32.50 38.49 51.74 79.35 53.80 55.97 0.00 67.46 67.12 64.00 69.94 66.49 58.26 66.54 170.44 75.68 89.46 12 I3 Intron 0 14.34 8.08 6.76 9.36 18.49 5.72 12.68 11.40 16.38 15.44 12.92 13.56 14.38 24.04 19.91 33.56 18.34 14.90 12.95 15.28 33.93 16.47 25.33 13 I3_AR1 ActiveIntronRegion 0 11.78 8.44 5.56 8.08 16.04 5.27 13.09 12.17 14.51 9.83 11.83 9.12 12.74 18.65 12.94 30.65 15.52 21.82 13.58 14.29 40.31 14.99 29.59 14 I3_SR1 SilentIntronRegion 0 13.01 7.56 4.25 8.24 17.86 6.22 13.60 12.16 19.18 15.36 10.97 7.57 13.19 18.53 18.14 30.24 13.01 9.80 9.08 13.05 23.73 10.18 26.78 15 I3_AR2 ActiveIntronRegion 0 18.80 9.40 10.45 11.50 23.74 6.07 12.47 11.56 16.77 19.63 14.63 21.73 14.45 26.49 23.44 37.97 24.09 17.24 15.96 18.76 38.50 20.75 23.54 16 I3_SR2 SilentIntronRegion 0 7.13 4.40 3.95 7.71 5.71 3.55 9.73 6.93 8.92 10.62 15.53 12.05 21.59 44.45 26.11 34.46 20.70 11.07 14.06 12.00 40.76 25.27 19.58 17 E4_Aa NovelBoundary 1 56.53 9.08 13.01 13.65 43.89 7.72 26.85 17.66 19.47 30.84 21.53 29.86 47.56 84.58 46.11 103.73 30.48 34.12 27.86 29.79 47.57 31.90 36.28 18 ER4a ExonRegion 0 25.00 3.11 12.45 2.47 12.44 6.48 8.52 5.40 11.13 16.70 58.34 17.08 45.00 132.56 59.59 99.07 82.55 15.16 4.36 13.09 97.62 34.48 54.92 19 E4_Da NovelBoundary 0 31.71 3.29 11.71 2.06 8.49 10.79 4.42 9.28 13.69 10.34 7.48 13.65 6.82 23.84 54.52 27.34 8.70 12.27 9.41 18.34 20.20 2.57 23.39 20 E4a_E5a KnownJunction 0 7.04 0.00 3.67 4.03 6.37 0.00 0.00 0.00 4.37 2.69 28.43 24.91 33.60 111.48 26.33 46.14 48.62 2.36 0.00 0.00 38.05 25.04 18.01 21 I4 Intron 0 16.84 9.05 10.16 8.33 15.90 11.04 10.61 15.93 16.08 19.34 15.41 13.58 13.01 23.29 20.73 38.51 22.32 17.61 11.30 14.41 39.62 16.78 29.76 22 I4_AR1 ActiveIntronRegion 0 20.08 6.12 11.87 6.61 14.32 9.22 12.71 10.76 11.61 16.80 11.51 8.15 8.77 24.07 25.16 32.02 22.00 16.33 11.12 15.75 29.41 14.42 23.32 23 I4_SR1 SilentIntronRegion 0 12.12 3.53 8.17 7.09 13.64 7.84 12.53 8.80 15.32 12.13 9.35 25.82 15.17 24.35 17.81 26.75 21.31 11.43 6.52 19.26 28.35 13.52 23.91 24 I4_AR2 ActiveIntronRegion 0 18.42 9.05 12.81 9.13 16.08 8.30 14.81 18.97 18.32 20.59 16.57 9.72 6.26 27.86 24.46 47.30 26.97 21.57 12.88 15.59 50.94 13.14 32.33 25 I4_SR2 SilentIntronRegion 1 39.07 27.37 7.71 1.79 12.32 15.13 7.45 22.51 10.91 18.85 18.24 3.52 2.93 25.58 36.33 49.35 30.33 24.71 5.38 12.50 42.05 12.50 32.73 26 I4_AR3 ActiveIntronRegion 0 12.46 9.37 6.45 6.18 15.64 8.57 10.15 12.05 13.12 12.97 13.58 6.09 7.97 24.47 19.91 43.08 16.56 20.23 7.70 15.37 35.93 15.96 32.13 27 I4_SR3 SilentIntronRegion 1 21.35 12.29 3.73 5.21 24.08 19.14 9.79 9.77 12.35 11.17 15.21 10.92 20.60 25.99 34.18 67.33 9.04 23.46 13.43 19.33 40.15 8.24 24.77 28 I4_AR7 ActiveIntronRegion 0 4.55 1.05 6.31 0.91 21.57 6.67 13.96 0.21 0.26 2.68 1.46 2.10 6.54 9.10 8.53 15.04 1.60 3.64 8.98 1.87 26.44 1.96 12.73 29 I4_AR8 ActiveIntronRegion 0 6.13 4.11 6.68 5.03 19.07 12.31 14.84 2.82 6.22 9.47 5.47 3.78 6.42 10.10 10.30 18.62 6.22 13.10 7.21 9.71 25.46 5.34 28.05 30 I4_AR9 ActiveIntronRegion 0 10.23 8.05 8.04 6.51 12.60 10.04 10.91 13.01 18.54 13.68 14.27 9.93 14.17 14.66 17.70 39.38 21.50 12.66 12.99 13.72 39.90 18.97 38.24 31 I4_SR4 SilentIntronRegion 0 18.61 7.67 15.74 5.38 20.45 12.23 6.01 19.10 15.39 21.00 16.55 30.08 16.35 25.82 13.69 51.44 22.43 22.93 22.46 8.24 36.33 15.49 37.27 32 I4_AR10 ActiveIntronRegion 0 23.34 9.74 13.00 11.44 16.12 7.29 8.61 25.15 13.20 19.77 16.43 16.18 19.38 20.43 13.74 41.38 19.81 25.58 17.94 19.32 67.97 23.63 38.95 33 I4_AR11 ActiveIntronRegion 0 10.79 11.98 11.54 6.65 19.79 10.89 10.99 19.24 18.39 16.96 14.35 12.17 12.57 19.80 13.20 44.01 24.11 15.19 12.79 11.47 30.01 12.82 25.14 34 I4_SR5 SilentIntronRegion 0 28.72 11.62 7.35 10.32 29.05 16.77 17.78 27.66 20.11 15.07 20.99 17.32 8.04 27.38 14.51 46.28 24.99 10.29 21.39 9.42 15.74 10.72 32.72 35 I4_AR12 ActiveIntronRegion 0 24.19 7.55 7.00 9.15 29.43 11.00 14.94 22.96 16.76 11.80 22.09 14.84 9.38 27.38 14.51 39.49 23.11 10.03 16.84 10.94 22.35 6.55 27.69 36 I4_AR13 ActiveIntronRegion 0 22.49 10.86 13.07 12.32 17.90 15.76 9.10 22.05 19.59 30.66 21.14 17.70 18.68 29.04 26.31 43.56 27.30 22.87 13.98 16.24 52.09 24.07 34.61 37 I4_SR7 SilentIntronRegion 0 25.94 14.86 3.55 4.75 4.67 0.85 3.56 7.00 4.81 11.94 10.46 14.65 3.61 22.90 24.62 16.23 16.50 6.49 2.37 4.26 15.60 10.74 9.79 38 I4_AR15 ActiveIntronRegion 0 31.36 9.35 0.00 0.00 10.02 3.40 6.14 0.00 0.00 0.00 8.96 6.61 18.59 7.26 12.19 2.76 9.18 0.00 0.00 1.97 6.13 3.79 5.45 39 E5_Aa NovelBoundary 0 129.06 25.59 4.67 8.82 25.30 12.72 24.07 10.88 15.19 22.35 9.37 20.26 0.00 35.49 13.85 27.60 27.02 11.11 8.75 2.56 44.48 22.41 17.33 40 ER5a ExonRegion 0 67.47 65.89 66.87 36.85 70.47 98.79 83.52 60.81 85.61 112.58 143.34 80.32 103.63 216.01 103.31 222.24 151.08 156.90 63.94 76.70 290.15 142.43 132.45 41 E5a_E6a KnownJunction 0 89.28 56.96 68.54 46.81 78.10 105.96 111.95 54.38 103.88 99.55 147.41 65.87 76.78 214.79 75.28 238.48 214.77 136.88 33.41 86.74 265.46 132.14 155.02 42 E6_Aa NovelBoundary 0 7.19 2.83 14.87 7.03 3.65 8.06 25.26 8.58 11.28 18.45 7.74 0.00 0.00 11.89 13.47 7.01 17.39 2.40 0.00 5.56 2.47 2.94 4.35 43 ER6a ExonRegion 0 67.27 63.31 72.44 59.94 98.67 101.01 84.01 64.92 129.46 144.36 208.67 143.41 160.81 280.55 158.85 291.97 228.44 150.22 101.73 97.94 282.46 262.01 222.85 44 E6_Da NovelBoundary 1 0.00 0.00 12.80 1.70 0.00 2.73 7.86 2.34 5.84 10.42 2.16 32.86 6.82 4.65 0.00 0.00 8.88 1.74 0.00 6.07 8.15 0.00 0.00 45 E6a_E7a KnownJunction 0 95.35 59.40 68.24 78.54 119.27 105.39 92.79 102.85 167.33 177.07 236.90 248.18 266.54 378.54 218.06 377.94 184.48 157.27 149.27 138.89 298.32 417.61 231.93 46 E7_Aa NovelBoundary 0 2.82 0.00 6.33 2.06 11.63 2.33 5.96 3.82 11.57 5.91 8.00 0.00 13.15 4.94 0.00 16.58 0.00 9.82 29.18 11.70 3.09 0.00 4.10 47 ER7a ExonRegion 0 84.20 52.70 81.79 69.49 93.65 94.24 62.99 83.98 159.09 169.00 231.66 171.96 167.18 306.03 140.22 283.91 271.24 147.23 84.18 100.75 328.68 226.52 170.33 48 E7a_E8a KnownJunction 0 100.02 53.41 84.71 88.20 87.27 94.89 56.62 58.24 146.56 147.12 158.51 157.40 102.43 232.33 119.79 234.30 200.37 120.42 93.84 119.14 242.91 163.37 130.09 49 ER8a ExonRegion 0 121.16 62.14 80.99 75.86 98.21 146.06 107.88 99.63 150.91 170.23 193.79 179.39 147.29 302.48 171.42 285.44 204.73 160.57 114.07 100.81 341.20 225.83 198.44 50 E8a_E9a KnownJunction 0 123.80 73.41 65.99 61.00 141.85 156.84 82.19 55.61 99.07 107.99 110.50 152.75 221.74 246.16 202.86 214.99 100.89 142.89 86.03 72.42 281.89 153.39 226.55 51 ER9a ExonRegion 0 29.43 16.20 17.98 11.15 18.91 24.91 16.74 16.04 16.46 23.98 24.46 17.19 10.60 49.22 25.92 42.95 25.03 28.24 12.84 12.64 50.92 30.85 25.62 52 E9_Da KnownBoundary 0 3.78 3.16 0.00 0.00 4.24 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 3.83 0.00 0.00 0.00 0.00 3.12 3.76 53 ER9b ExonRegion 0 2.13 0.26 1.33 0.38 0.28 0.00 0.75 0.02 0.35 3.47 0.39 0.66 0.02 0.03 2.61 1.61 0.12 0.50 0.47 3.11 0.80 1.34 2.02