Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CTRL Gene 0 24.45 9.66 38.52 20.27 13.70 16.76 6.19 14.41 17.02 9.12 12.65 6.06 6.08 18.63 40.59 27.16 21.36 15.95 15.25 13.61 7.09 4.95 10.41 2 319955 Transcript 0 12.07 4.34 28.09 17.80 11.91 10.58 2.30 8.31 7.88 4.92 7.88 2.78 6.19 13.15 24.53 12.79 12.88 8.85 11.46 12.18 4.05 3.44 5.01 3 432773 Transcript 0 9.39 4.43 11.03 3.41 3.66 4.21 3.61 8.21 8.39 3.24 3.24 1.23 4.07 6.58 19.17 11.66 11.16 7.94 7.62 3.93 2.88 1.91 8.47 4 IG14 Intergenic 0 23.85 18.40 43.79 20.03 19.35 24.63 10.82 24.27 22.01 13.91 13.68 16.05 16.46 25.92 32.24 37.40 26.15 25.77 19.95 18.72 9.45 4.89 12.32 5 IG14_AR2 ActiveIntergenicRegion 0 33.67 26.95 39.54 20.82 19.35 25.65 13.38 33.26 27.31 22.03 17.83 30.29 29.74 37.77 41.28 54.94 29.06 30.44 30.18 26.12 14.31 7.42 16.69 6 IG14_SR1 SilentIntergenicRegion 0 16.78 18.59 27.83 15.26 13.46 15.02 7.29 17.17 14.99 10.37 9.10 14.04 23.58 22.40 26.68 26.04 16.22 18.88 13.98 12.60 8.24 3.26 8.10 7 IG14_AR1 ActiveIntergenicRegion 0 23.61 15.28 52.70 21.96 22.08 28.70 11.53 24.34 23.36 12.65 14.30 11.89 8.47 23.33 31.59 36.37 29.69 27.29 19.04 18.89 8.28 4.74 12.70 8 ER1a ExonRegion 0 4.96 3.10 2.01 0.79 5.99 2.87 1.01 0.85 0.00 0.09 4.41 0.00 0.00 14.47 16.15 6.74 3.65 0.11 4.85 12.96 3.35 4.76 0.04 9 E1_Da NovelBoundary 0 10.37 3.16 40.45 14.22 7.30 11.19 11.66 18.73 22.71 19.15 9.27 11.70 25.16 24.37 17.80 24.95 30.86 29.72 13.18 20.26 12.23 11.27 19.55 10 E1a_E2a KnownJunction 0 0.00 0.00 2.87 3.30 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.58 0.00 0.00 0.00 0.00 0.00 0.00 11 I1 Intron 0 23.16 11.02 32.98 16.18 14.50 31.95 7.17 16.69 18.77 13.26 9.04 9.34 6.33 23.53 26.84 28.42 15.08 26.06 19.29 17.63 6.79 5.76 14.04 12 I1_AR1 ActiveIntronRegion 0 23.26 11.07 33.12 16.25 14.56 32.08 7.20 16.76 18.85 13.31 9.07 9.37 6.36 23.62 26.94 28.54 15.14 26.17 19.37 17.71 6.81 5.78 14.10 13 E2_Aa NovelBoundary 0 29.86 15.79 78.23 41.72 30.73 28.39 7.42 31.59 34.43 30.25 15.27 0.00 0.00 23.37 34.98 37.26 16.64 44.27 17.98 32.34 16.93 14.21 19.89 14 ER2a ExonRegion 0 21.94 4.05 29.74 14.06 10.37 22.25 6.44 10.14 12.43 8.62 10.30 9.12 10.01 14.96 33.48 27.55 8.73 27.15 19.88 23.04 6.38 6.75 15.30 15 E2_Da NovelBoundary 0 14.30 8.22 57.63 24.47 8.49 29.81 6.23 12.45 23.90 22.38 16.90 0.00 12.66 19.13 36.96 28.80 25.62 28.93 17.22 8.44 2.78 4.90 11.01 16 E2a_E3b KnownJunction 0 10.15 0.00 25.81 14.72 0.00 9.94 0.00 5.96 4.43 2.47 12.00 0.00 13.47 4.77 8.90 3.42 3.74 5.35 0.00 8.25 0.00 3.12 0.00 17 I2 Intron 0 11.07 5.32 0.00 0.00 7.00 17.99 0.87 1.68 0.00 0.00 5.06 0.00 5.05 5.12 16.63 5.83 6.47 3.01 0.00 11.13 4.32 0.00 3.84 18 I2_AR1 ActiveIntronRegion 0 11.36 5.46 0.00 0.00 7.18 18.46 0.89 1.71 0.00 0.00 5.19 0.00 5.18 5.26 17.06 5.98 6.65 3.09 0.00 11.37 4.44 0.00 3.94 19 E3_Aa NovelBoundary 0 20.67 18.22 40.51 13.29 12.82 15.96 6.49 14.29 17.13 15.28 2.58 0.00 0.00 30.26 38.94 36.40 18.42 38.05 0.00 9.46 8.77 3.06 8.71 20 E3_Ab NovelBoundary 0 18.37 3.35 40.57 16.75 3.82 27.31 4.42 7.23 7.73 8.49 10.53 11.70 6.82 11.42 45.37 19.05 3.74 8.91 4.42 14.64 2.66 5.82 8.62 21 ER3a ExonRegion 0 2.72 0.10 7.82 2.86 0.13 2.71 1.95 0.25 3.82 2.79 1.47 0.00 2.01 4.49 12.30 6.23 1.73 2.20 3.03 2.74 0.73 1.49 3.22 22 ER3b ExonRegion 0 23.28 12.51 54.77 27.36 6.06 18.27 2.45 8.80 22.86 12.40 13.53 2.30 6.17 14.16 34.04 34.39 27.41 17.05 22.70 18.02 2.54 8.36 9.14 23 E3_Da KnownBoundary 1 24.37 12.89 26.40 3.16 0.00 0.00 1.94 8.71 15.51 8.11 9.58 0.00 0.00 14.07 16.94 3.67 47.78 17.33 21.55 10.74 3.15 6.25 30.05 24 E3a_E3c KnownJunction 0 9.71 11.05 51.92 38.06 18.68 12.78 0.00 12.32 10.19 9.37 6.53 0.00 0.00 4.77 9.39 10.77 17.77 8.83 13.65 7.67 2.66 5.08 3.24 25 ER3c ExonRegion 0 15.73 12.00 18.65 4.96 4.69 6.46 4.42 9.19 9.27 4.23 5.03 1.61 5.15 10.18 22.88 9.18 23.05 9.81 8.43 5.16 4.08 2.84 11.98 26 E3_Ac KnownBoundary 0 17.11 9.08 13.01 11.89 0.00 13.40 6.54 19.43 5.30 7.41 2.68 0.00 13.15 4.77 13.72 7.78 27.21 21.35 9.04 3.26 5.93 0.00 7.09 27 ER3d ExonRegion 0 47.61 22.85 64.82 33.82 21.44 27.30 8.76 19.74 11.86 16.23 11.72 19.51 2.55 22.08 50.11 20.44 28.40 29.18 20.65 15.08 8.38 4.01 10.33 28 E3_Db NovelBoundary 0 12.37 6.25 39.03 16.65 8.32 2.38 7.86 8.67 23.03 7.60 2.68 0.00 0.00 22.84 14.09 3.25 22.72 20.64 14.12 11.76 8.77 2.82 7.34 29 E3b_E4a KnownJunction 0 53.71 15.79 57.92 24.11 15.28 31.18 11.88 7.52 12.64 16.01 12.37 13.80 0.00 19.25 41.04 14.27 13.18 16.75 4.80 17.45 0.00 5.76 3.67 30 I3 Intron 0 7.88 5.30 10.88 9.07 6.97 8.19 2.46 8.63 9.59 3.82 0.72 4.27 5.75 4.94 16.14 5.53 11.06 12.65 7.11 8.71 6.56 4.65 3.28 31 I3_AR1 ActiveIntronRegion 0 6.54 1.89 3.70 4.83 1.82 9.79 0.00 5.54 5.87 1.67 0.00 2.95 1.39 3.25 19.06 4.66 5.70 10.67 5.43 3.63 3.31 2.37 1.67 32 I3_SR1 SilentIntronRegion 0 8.70 7.06 14.57 11.32 9.62 7.58 3.71 10.31 11.59 4.94 1.08 5.00 7.99 5.87 15.08 6.07 13.89 13.87 8.09 11.36 8.28 5.86 4.13 33 E4_Aa NovelBoundary 0 24.15 5.00 13.10 26.64 0.00 0.00 1.99 0.00 23.64 9.40 6.84 13.65 0.00 11.89 28.43 11.71 18.05 23.88 12.89 23.91 0.00 0.00 4.18 34 ER4a ExonRegion 0 42.17 16.91 60.94 33.80 20.11 32.39 8.92 15.72 20.42 14.47 17.03 11.82 7.85 25.63 64.04 35.32 29.22 20.42 15.15 18.74 8.62 6.93 7.89 35 E4_Da NovelBoundary 0 0.00 2.96 1.57 1.96 0.00 2.84 0.00 4.19 4.48 2.79 2.68 6.30 0.00 0.00 8.90 12.48 12.16 12.02 0.00 8.31 13.28 0.00 0.00 36 E4a_E5a KnownJunction 0 28.82 24.40 44.17 20.44 19.27 41.74 1.85 16.72 18.26 7.82 17.11 0.00 0.00 24.96 68.98 32.47 37.87 10.49 8.09 8.82 5.75 0.00 7.43 37 E5_Aa NovelBoundary 0 3.33 3.09 4.55 3.56 4.33 0.00 3.75 11.21 5.18 0.00 2.00 12.45 0.00 4.71 10.75 6.84 4.39 7.63 9.32 0.00 12.97 0.00 0.00 38 ER5a ExonRegion 0 37.75 15.02 66.01 36.59 21.53 27.99 8.79 21.68 27.28 11.43 21.46 6.14 2.94 29.31 66.45 48.71 28.67 15.66 18.16 18.86 12.56 6.22 10.67 39 E5_Da KnownBoundary 0 6.45 0.00 5.35 0.00 11.46 5.45 12.76 25.96 12.44 3.98 0.00 0.00 0.00 2.12 14.09 20.51 4.21 7.54 9.32 6.52 5.81 2.27 12.46 40 E5a_E5b KnownJunction 0 21.41 6.64 57.89 41.72 36.42 16.75 4.37 14.62 13.19 5.94 12.37 6.30 12.82 37.91 72.93 20.42 34.32 8.37 28.89 23.52 9.14 0.00 4.35 41 ER5b ExonRegion 0 9.71 1.17 6.62 2.41 6.15 3.46 4.47 15.19 12.09 2.69 3.22 2.07 5.05 5.09 22.34 19.58 8.69 11.81 11.40 3.90 3.84 1.41 10.21 42 E5_Ab KnownBoundary 0 0.00 0.00 12.83 5.29 7.47 0.00 0.00 8.87 19.10 4.38 2.26 0.00 13.64 9.77 0.00 12.82 7.76 14.18 14.02 2.49 2.90 0.00 11.78 43 ER5c ExonRegion 0 28.52 9.25 55.28 36.80 22.26 19.77 11.16 27.56 30.09 10.78 25.51 5.95 8.10 30.66 55.96 44.17 34.02 20.94 22.26 16.60 10.03 4.57 10.73 44 E5_Db KnownBoundary 0 69.42 14.73 112.24 47.38 30.65 38.39 8.39 35.24 33.07 8.84 36.06 12.60 20.45 28.43 96.67 53.58 47.03 43.15 27.11 26.78 15.07 5.33 29.88 45 ER5d ExonRegion 0 16.33 5.57 26.39 11.95 11.89 9.44 4.25 11.73 14.95 7.95 9.56 4.06 7.03 15.17 30.86 20.61 17.38 12.15 12.96 9.82 6.79 4.39 12.15