Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CHST5 Gene 0 3.26 2.37 18.61 6.87 10.49 2.42 5.23 14.07 20.20 12.02 1.30 1.64 1.95 2.58 5.18 3.07 2.17 11.95 5.91 5.73 1.22 1.50 2.20 2 460606 Transcript 0 0.00 0.00 0.24 0.00 0.00 0.00 0.41 0.39 0.47 0.26 0.00 0.00 0.00 0.65 1.15 0.63 0.88 1.25 0.00 0.00 0.00 0.00 0.00 3 336257 Transcript 0 1.72 0.99 8.40 2.78 7.69 1.02 2.49 5.81 11.88 7.69 0.56 0.86 0.79 2.04 3.19 1.08 1.13 7.80 3.70 3.32 1.60 0.65 1.01 4 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.76 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 Ix Intron 0 4.84 3.26 7.35 6.22 11.50 3.86 5.81 4.83 15.32 6.17 7.25 6.57 10.81 5.40 5.92 7.61 6.34 4.08 8.88 4.87 2.42 9.82 6.99 7 Ix_SR2 SilentIntronRegion 0 2.59 3.74 6.12 5.73 7.86 3.07 6.09 6.68 14.36 5.49 8.07 4.39 9.47 5.80 5.89 8.09 7.01 3.33 9.51 5.53 1.81 7.73 6.47 8 Ix_AR3 ActiveIntronRegion 0 5.68 2.35 5.92 6.93 15.89 4.26 6.32 4.77 18.15 5.56 5.01 10.96 15.71 3.49 4.57 7.98 4.15 3.22 2.28 3.33 0.75 13.48 3.85 9 Ix_AR1 ActiveIntronRegion 0 6.66 3.66 10.41 6.09 11.24 4.40 4.96 2.70 13.53 7.69 8.70 4.51 7.20 6.99 7.42 6.69 7.92 5.92 15.27 5.74 4.95 8.44 11.02 10 ER2a ExonRegion 0 0.00 0.00 0.00 0.02 0.00 0.00 0.18 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 Ix Intron 0 5.91 12.49 13.34 6.53 16.81 3.75 9.13 7.19 20.74 9.86 6.21 4.75 6.47 6.41 4.47 8.57 5.38 8.48 8.89 12.08 4.00 7.76 9.29 13 Ix_AR2 ActiveIntronRegion 0 4.66 0.96 10.00 4.74 14.27 2.58 7.40 6.15 16.79 5.84 6.17 6.25 10.25 7.17 2.07 16.51 5.90 18.17 13.98 9.24 9.14 7.76 8.32 14 Ix_SR1 SilentIntronRegion 0 7.90 9.90 11.27 8.27 11.78 2.53 7.59 9.26 23.80 9.89 8.46 4.03 3.70 8.94 5.80 10.38 6.93 10.65 9.93 16.70 4.79 7.17 14.37 15 Ix_AR1 ActiveIntronRegion 0 4.52 17.01 15.78 5.46 21.57 5.03 10.78 5.70 19.06 10.68 4.36 5.07 8.05 4.18 3.86 5.51 4.01 4.76 7.04 8.84 2.32 8.28 5.29 16 Ix Intron 0 2.38 8.56 17.43 8.31 19.52 4.35 10.29 7.64 24.67 11.35 6.65 4.11 6.51 2.91 3.38 8.46 5.09 6.76 6.23 13.37 1.57 5.19 4.01 17 Ix_SR2 SilentIntronRegion 0 3.47 6.40 13.30 4.42 21.53 2.86 9.93 5.93 25.87 12.21 3.25 3.99 7.31 1.67 4.83 7.75 4.40 5.93 3.51 6.70 0.90 4.36 2.83 18 Ix_AR1 ActiveIntronRegion 0 0.00 16.66 27.72 9.86 29.18 5.76 9.71 6.42 29.35 6.23 3.96 2.06 5.81 1.62 0.00 11.75 3.46 4.22 7.43 10.33 0.94 5.36 4.34 19 Ix_SR1 SilentIntronRegion 0 1.64 10.06 20.55 11.50 17.70 5.55 10.74 9.18 23.80 11.04 9.61 4.35 5.98 4.01 2.40 9.00 5.79 7.63 8.47 19.10 2.16 5.92 5.01 20 I2 Intron 0 2.81 2.40 12.61 3.96 10.74 3.14 5.43 5.55 14.72 9.18 1.20 1.27 1.82 1.73 2.33 4.12 2.92 9.05 5.55 2.39 1.11 2.40 3.64 21 I2_SR1 SilentIntronRegion 0 3.30 3.26 15.63 5.05 13.78 4.27 7.19 6.34 18.00 11.02 1.63 1.81 2.28 2.18 2.62 5.29 3.89 9.99 7.13 3.14 1.42 2.90 4.59 22 E3_Aa NovelBoundary 0 3.19 3.35 11.95 4.83 3.65 0.00 7.46 22.84 18.84 13.08 0.00 0.00 0.00 0.00 4.45 0.00 8.79 8.00 3.95 3.26 0.00 0.00 0.00 23 ER3a ExonRegion 0 0.00 0.00 3.06 0.09 0.79 0.13 0.00 0.55 2.55 2.55 0.18 0.00 0.00 0.81 4.68 0.00 0.23 2.06 0.58 1.16 0.35 0.00 0.00 24 E3_Da NovelBoundary 0 0.00 0.00 3.67 0.00 10.70 2.16 5.70 8.75 20.92 5.16 0.00 0.00 0.00 0.00 4.45 0.00 0.00 4.44 8.66 3.00 0.00 0.00 0.00 25 E3a_E4a KnownJunction 0 0.00 0.00 5.41 0.00 3.74 0.00 0.00 1.85 9.98 6.39 0.00 0.00 0.00 2.47 0.00 0.00 0.00 10.16 3.67 3.20 2.35 0.00 0.00 26 I3 Intron 0 1.61 2.70 5.66 3.47 13.04 0.93 4.19 6.68 18.05 10.16 0.12 0.23 0.49 0.34 0.70 1.32 1.04 6.92 4.84 2.29 0.83 0.53 2.23 27 I3_SR1 SilentIntronRegion 0 1.62 2.78 5.83 3.57 13.42 0.96 4.31 6.88 18.48 10.36 0.13 0.23 0.50 0.31 0.72 1.36 1.07 7.04 4.98 2.36 0.86 0.54 2.30 28 E4_Aa NovelBoundary 0 3.78 0.00 22.56 9.29 16.21 0.00 7.46 15.12 36.08 11.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.14 7.91 8.37 0.00 2.57 0.00 29 ER4a ExonRegion 0 3.41 4.37 19.77 4.50 6.82 3.84 5.73 8.84 14.41 17.64 2.18 0.00 0.00 2.46 0.79 3.41 1.74 14.41 12.77 6.02 2.20 4.47 0.87 30 E4_Da NovelBoundary 0 6.37 0.00 15.64 6.89 32.77 2.84 2.25 12.86 34.55 18.88 0.00 0.00 0.00 0.00 0.00 3.67 0.00 0.00 3.86 11.44 0.00 0.00 16.22 31 E4a_E5a KnownJunction 0 0.00 0.00 25.49 1.53 0.00 0.00 4.24 6.53 18.37 10.40 2.05 0.00 0.00 2.24 4.45 4.02 0.00 16.54 17.60 4.99 0.00 0.00 7.68 32 I4 Intron 0 1.03 1.08 9.84 6.01 8.86 1.46 4.03 8.53 15.44 10.41 0.00 0.00 0.00 0.55 0.45 0.52 0.58 7.91 3.38 2.72 0.88 0.09 0.65 33 I4_SR1 SilentIntronRegion 0 1.03 1.08 9.85 6.02 8.88 1.46 4.04 8.54 15.47 10.43 0.00 0.00 0.00 0.55 0.45 0.53 0.58 7.93 3.38 2.73 0.88 0.09 0.65 34 E5_Aa NovelBoundary 0 0.00 2.57 13.66 13.42 34.38 0.00 14.84 11.79 16.75 11.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.31 7.62 3.26 2.72 0.00 4.35 35 ER5a ExonRegion 0 1.17 0.09 16.59 8.05 6.63 0.06 5.21 11.17 25.67 15.99 2.77 3.40 0.00 1.47 9.28 6.40 6.40 16.17 13.57 2.09 4.75 0.32 7.32 36 E5_Da KnownBoundary 0 3.63 0.00 11.74 12.19 20.54 0.00 2.16 11.34 37.41 14.85 0.00 0.00 0.00 0.00 0.00 0.00 3.74 7.59 0.00 0.00 2.66 2.51 0.00 37 E5a_E5b KnownJunction 0 0.00 0.00 1.18 0.00 0.00 0.00 0.00 1.93 0.00 1.29 0.00 0.00 0.00 2.47 4.45 3.16 4.39 6.26 0.00 0.00 0.00 0.00 0.00 38 ER5b ExonRegion 0 5.17 2.98 16.74 8.24 18.55 2.94 7.48 15.03 23.10 14.12 1.51 2.59 2.38 2.84 4.90 3.24 3.15 11.20 6.86 5.61 2.10 1.96 3.04 39 E5_Ab KnownBoundary 0 0.00 3.16 21.29 9.69 4.33 0.00 8.21 18.61 19.33 5.02 0.00 0.00 0.00 2.47 4.45 4.36 0.00 19.98 3.86 0.00 0.00 0.00 3.24 40 ER5c ExonRegion 0 2.39 2.20 21.93 6.79 6.46 2.33 4.24 15.36 20.41 11.44 1.20 1.20 2.05 2.69 5.87 3.16 1.61 13.48 5.27 6.55 0.56 1.24 1.75 41 IG17_SR12 SilentIntergenicRegion 0 1.64 1.24 7.74 6.44 27.96 0.73 7.51 29.60 22.27 10.27 0.05 0.00 0.36 0.15 0.32 0.56 0.00 6.50 2.46 1.34 0.05 0.05 0.21 42 IG17_AR13 ActiveIntergenicRegion 0 1.34 0.66 9.14 7.71 8.12 1.51 5.51 45.82 31.86 19.40 0.67 1.06 0.00 2.06 0.00 0.65 0.00 12.44 10.55 4.68 1.53 0.00 4.10 43 IG17_SR11 SilentIntergenicRegion 0 0.94 1.68 7.53 3.47 6.39 0.08 3.40 31.79 22.75 16.07 1.43 0.24 0.26 2.48 0.48 0.48 1.81 12.60 8.17 3.30 0.75 0.43 1.81 44 IG17_SR10 SilentIntergenicRegion 0 0.00 2.03 12.20 12.79 33.00 0.00 2.46 25.43 25.47 27.53 0.83 9.90 2.23 2.24 2.90 3.68 2.04 13.20 5.61 9.73 0.42 0.00 6.29 45 IG17_AR10 ActiveIntergenicRegion 0 8.43 8.75 20.37 18.13 67.38 2.05 23.63 36.94 55.13 32.69 2.16 10.35 6.82 5.01 6.23 4.74 3.68 5.87 9.14 8.82 0.35 0.66 0.94