Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TERF2 Gene 0 96.79 139.00 134.25 79.26 123.52 86.06 86.08 120.33 113.79 84.60 101.12 93.83 92.53 145.66 143.09 129.29 134.99 122.56 109.50 128.68 81.29 70.18 57.55 2 254942 Transcript 0 54.96 130.19 129.37 69.34 134.50 96.74 104.70 123.94 123.12 90.07 126.51 142.69 147.39 190.00 154.58 164.05 178.61 152.33 130.54 155.47 95.63 87.91 62.98 3 ER1a ExonRegion 0 11.18 25.07 17.20 6.30 11.05 15.92 23.12 16.52 15.71 16.58 43.76 9.52 13.88 39.12 35.39 53.58 52.95 30.95 28.33 27.24 41.23 9.75 20.60 4 E1a_E2a KnownJunction 0 43.71 75.18 60.49 37.72 92.95 82.91 137.74 74.18 59.61 28.82 81.44 108.64 80.19 114.13 80.47 141.24 168.30 116.11 55.25 98.18 83.34 41.39 32.61 5 E2_Aa NovelBoundary 0 10.22 9.60 0.00 0.00 16.21 10.22 39.00 0.00 8.10 4.46 0.00 0.00 0.00 7.59 13.35 4.19 0.00 0.00 4.52 6.14 3.15 0.00 0.00 6 ER2a ExonRegion 0 30.40 77.11 81.04 34.78 91.20 84.66 94.37 83.96 93.01 81.88 121.57 96.33 107.77 161.41 132.94 150.28 146.27 126.72 85.01 134.44 107.64 68.84 47.41 7 E2a_E3a KnownJunction 1 28.00 105.84 132.64 57.20 137.18 75.58 97.11 155.88 131.02 141.62 153.51 162.50 216.87 252.16 267.51 390.58 190.93 216.68 303.63 192.39 118.43 176.54 132.74 8 ER3a ExonRegion 0 41.22 89.31 127.34 67.15 82.72 74.09 63.92 161.72 138.12 112.36 207.66 185.64 170.52 249.52 225.99 234.89 271.43 182.08 180.57 171.90 112.14 126.39 89.65 9 E3_Da NovelBoundary 0 6.30 3.09 12.36 8.69 3.65 5.79 15.19 0.00 7.23 3.92 26.53 13.95 29.06 29.20 0.00 32.56 70.13 4.19 7.15 9.14 8.28 11.88 7.51 10 E3a_E4a KnownJunction 0 61.27 118.99 134.26 74.95 148.05 80.47 116.59 152.30 134.84 133.61 159.99 181.86 186.84 155.81 122.26 114.59 221.88 131.86 101.46 154.23 89.89 109.42 37.73 11 E3a_E6a NovelJunction 0 0.00 6.58 0.00 2.03 0.00 0.00 3.93 1.77 5.09 2.34 17.06 0.00 6.82 5.77 4.45 13.07 8.51 6.38 3.58 2.62 2.97 9.19 0.00 12 I3_SR1 SilentIntronRegion 0 5.62 6.89 6.26 5.00 9.58 3.00 15.79 4.70 4.35 5.31 12.03 19.75 16.31 20.42 14.02 21.78 23.89 3.94 5.20 7.30 3.42 4.12 7.36 13 I3_AR1 ActiveIntronRegion 0 3.33 7.61 9.14 3.63 13.86 2.47 14.09 5.65 6.48 5.63 9.56 3.99 15.23 18.05 14.70 21.44 28.89 4.48 4.33 3.99 5.94 7.49 3.83 14 I3_AR2 ActiveIntronRegion 0 3.58 8.29 7.34 5.64 10.84 1.57 13.07 7.52 4.61 4.67 10.79 18.79 13.11 13.48 6.92 27.19 14.85 4.57 3.23 6.81 6.13 3.47 8.83 15 I3_AR3 ActiveIntronRegion 0 6.82 9.79 11.85 11.46 11.59 0.00 7.26 9.54 2.47 12.06 8.02 21.81 15.29 8.12 14.61 15.96 5.50 1.37 5.31 14.81 0.00 0.00 2.61 16 I3_AR4 ActiveIntronRegion 0 5.23 9.81 1.87 10.26 37.15 9.17 49.61 9.56 6.97 4.25 1.93 9.17 9.38 2.20 2.39 0.17 10.87 0.00 0.00 2.75 0.00 9.31 5.87 17 ER4a ExonRegion 0 90.62 214.69 160.43 90.95 191.76 118.02 183.18 192.28 178.91 151.38 261.47 270.77 303.18 274.79 216.79 297.59 295.18 202.00 249.70 203.11 119.10 152.96 115.37 18 E4a_E5a KnownJunction 1 88.02 255.42 158.78 81.91 115.96 81.03 130.94 156.57 166.95 101.78 203.84 296.65 350.79 282.65 156.38 187.81 248.53 183.39 132.80 170.21 109.72 121.49 58.90 19 I4 Intron 0 19.92 0.62 9.42 9.25 7.31 3.34 8.85 3.91 5.03 1.56 8.80 9.97 26.55 4.00 7.62 10.83 5.01 2.23 2.90 2.58 6.02 6.96 2.67 20 I4_SR1 SilentIntronRegion 0 20.15 0.62 9.54 9.36 7.40 3.38 8.96 3.95 5.09 1.58 8.91 10.09 26.87 4.05 7.71 10.96 5.07 2.26 2.94 2.61 6.09 7.04 2.71 21 ER5a ExonRegion 0 81.80 185.12 142.92 79.40 168.46 148.01 145.82 137.59 143.77 104.40 177.84 240.42 242.29 225.87 168.49 174.81 196.82 162.69 114.52 154.29 117.25 110.81 63.09 22 E5a_E6a KnownJunction 0 32.30 180.76 152.18 52.27 187.69 113.63 105.95 127.74 144.59 77.07 133.77 221.02 227.91 238.39 129.18 161.67 170.17 217.67 106.64 191.69 101.99 92.83 74.44 23 I5_AR2 ActiveIntronRegion 0 22.32 10.04 5.33 3.02 13.20 10.60 9.73 0.00 2.79 0.00 0.34 4.61 9.79 1.52 5.42 5.36 4.31 1.53 1.38 1.85 0.00 1.40 2.62 24 I5_SR2 SilentIntronRegion 0 31.89 14.85 12.41 5.93 12.91 5.66 7.97 1.84 3.79 2.74 4.50 12.61 4.08 6.99 5.93 7.04 10.69 5.30 5.26 5.32 1.10 5.12 4.66 25 I5_AR3 ActiveIntronRegion 0 26.89 16.63 6.85 5.57 22.15 6.68 9.61 8.63 8.19 2.76 12.98 19.60 6.62 6.73 5.91 9.79 8.87 4.32 1.62 4.81 5.57 7.76 5.03 26 ER6a ExonRegion 0 44.62 133.25 170.61 99.82 124.38 90.88 103.37 171.68 176.36 115.69 169.73 241.72 268.91 288.43 238.04 234.08 219.90 220.62 163.08 206.78 129.63 122.66 107.04 27 E6a_E7a KnownJunction 0 72.09 85.71 188.23 134.68 136.33 79.84 118.53 186.72 198.06 137.40 204.89 202.42 159.24 249.81 249.71 179.10 306.31 167.22 190.22 247.87 151.91 130.61 72.99 28 ER7a ExonRegion 0 86.04 158.77 159.04 81.09 121.38 110.40 106.29 135.49 141.58 103.55 160.73 122.79 134.04 229.65 196.09 200.99 210.74 206.26 134.90 181.58 150.81 86.25 87.81 29 E7_Da NovelBoundary 0 35.56 29.47 18.01 6.16 19.02 7.61 39.08 10.02 10.68 26.97 93.71 31.21 20.29 104.13 105.20 100.23 77.42 52.52 15.81 36.56 35.03 19.47 51.05 30 E7a_E8a KnownJunction 0 10.74 147.67 114.72 52.94 119.27 139.86 108.24 99.52 83.13 68.77 27.80 37.66 34.41 160.99 123.12 74.34 125.57 104.46 66.07 138.83 64.68 28.47 37.05 31 I7_AR1 ActiveIntronRegion 1 26.80 20.99 17.90 17.09 26.46 12.88 25.15 19.21 18.84 24.46 67.23 30.70 22.99 55.76 62.13 54.13 54.68 37.78 33.71 23.99 20.07 35.77 25.22 32 I7_AR3 ActiveIntronRegion 0 18.54 13.19 17.12 11.72 13.69 3.68 17.66 9.07 8.89 9.85 7.21 14.10 8.23 7.37 14.75 10.92 8.67 5.70 8.80 10.66 2.20 14.79 5.02 33 ER8a ExonRegion 0 58.25 124.83 115.98 60.87 262.81 180.67 118.40 107.63 106.41 81.42 61.92 73.55 64.35 134.84 123.51 98.60 116.30 164.73 110.01 136.14 79.95 48.84 54.26 34 E8_Da NovelBoundary 0 0.00 6.71 22.50 27.17 7.30 0.00 6.36 17.17 10.39 17.25 0.00 20.11 0.00 0.00 4.45 11.71 4.77 14.59 3.58 26.97 0.00 0.00 0.00 35 E8a_E9a KnownJunction 0 66.01 83.01 117.26 68.42 186.67 132.14 118.36 84.16 113.95 59.58 80.28 81.18 69.15 150.98 148.22 109.71 125.95 135.26 116.24 167.65 75.92 59.95 41.06 36 E9_Aa NovelBoundary 0 2.96 30.65 8.66 28.20 27.25 15.73 20.98 2.55 7.55 6.02 4.79 0.00 25.65 2.88 13.35 4.02 0.00 4.56 0.00 9.72 3.03 8.33 8.71 37 ER9a ExonRegion 0 32.04 101.96 121.81 63.87 118.65 85.65 70.14 82.85 99.09 61.07 51.75 51.86 51.38 127.23 89.81 91.26 101.80 118.51 91.94 124.76 54.99 52.14 31.57 38 E9_Da NovelBoundary 0 6.59 11.25 10.11 29.13 7.22 5.79 14.71 14.70 5.03 7.06 0.00 12.60 26.78 0.00 0.00 4.36 7.67 5.60 13.08 6.01 0.00 0.00 0.00 39 E9a_E10a KnownJunction 0 26.75 147.74 146.48 73.35 118.25 60.14 63.90 95.42 94.94 47.65 31.06 60.92 62.50 159.16 95.31 122.36 121.55 107.49 143.91 130.07 48.37 66.01 42.34 40 I9 Intron 0 14.99 18.45 12.52 23.37 18.35 7.10 14.21 8.26 7.13 5.29 2.57 5.07 12.79 1.42 6.19 7.56 4.75 2.44 4.93 7.30 1.95 1.84 2.27 41 I9_SR1 SilentIntronRegion 0 15.05 18.52 12.58 23.47 18.43 7.13 14.27 8.30 7.16 5.32 2.58 5.09 12.84 1.42 6.22 7.59 4.77 2.45 4.96 7.33 1.96 1.85 2.28 42 E10_Aa NovelBoundary 0 3.78 14.54 12.92 45.22 20.88 2.90 13.20 13.43 11.75 10.83 2.42 0.00 0.00 4.77 18.17 40.25 9.54 9.49 18.17 5.69 3.15 3.00 23.99 43 ER10a ExonRegion 0 139.25 163.24 156.69 99.78 140.79 84.14 83.35 132.60 119.21 86.74 70.71 65.67 56.20 114.97 137.88 99.41 102.96 99.50 105.93 122.56 60.04 65.03 49.94 44 IG38 Intergenic 0 13.86 10.82 11.07 9.48 16.15 5.27 10.36 8.14 7.81 2.68 2.70 7.90 9.21 6.24 10.12 10.23 5.55 7.74 9.07 8.48 2.13 2.79 5.85 45 IG38_SR2 SilentIntergenicRegion 0 11.69 10.61 10.43 9.12 15.06 4.55 9.64 7.03 8.60 2.34 2.81 7.44 9.94 6.86 10.76 9.15 5.75 7.69 8.49 7.97 2.05 2.92 6.25 46 IG38_AR1 ActiveIntergenicRegion 0 22.55 12.36 15.30 10.71 23.52 7.12 14.44 13.41 6.54 3.96 3.10 9.69 8.23 4.78 9.90 16.06 6.02 9.73 10.66 9.97 2.75 2.86 5.31 47 IG38_SR1 SilentIntergenicRegion 0 10.87 8.31 4.42 9.94 4.14 8.25 5.37 3.42 2.55 2.53 0.00 7.09 3.86 3.74 2.87 3.55 1.65 1.72 10.77 9.74 1.10 1.04 2.94