Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF821 Gene 0 29.02 65.25 97.68 54.80 43.55 73.43 39.52 79.83 74.64 102.03 16.32 12.40 19.63 14.96 32.26 19.69 17.70 129.79 45.16 86.63 25.38 18.85 21.23 2 425432 Transcript 0 25.68 69.59 75.63 43.10 53.38 53.62 24.35 85.53 71.06 96.92 19.81 27.93 22.85 13.76 20.49 18.53 29.01 127.27 46.44 101.70 27.35 21.16 33.19 3 313565 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 446827 Transcript 0 2.77 2.81 1.71 1.45 3.43 4.10 2.37 6.32 8.16 3.29 2.10 1.53 1.68 1.84 3.59 2.58 4.04 8.05 6.41 6.05 10.13 2.29 3.41 5 IG30_AR9 ActiveIntergenicRegion 0 2.73 3.32 15.37 2.96 3.45 1.73 2.96 6.41 4.11 3.52 2.49 2.36 3.55 3.21 4.19 4.08 3.68 3.70 8.75 6.58 1.32 0.72 2.52 6 ER1a ExonRegion 0 4.24 17.35 14.45 5.23 9.58 37.31 10.53 9.52 12.12 17.03 5.79 0.00 0.27 3.48 4.09 1.40 2.39 22.66 16.86 23.94 8.18 4.42 4.83 7 E1a_E2b KnownJunction 0 6.59 40.78 58.66 39.59 25.38 23.85 5.96 45.39 30.87 57.94 13.53 0.00 7.30 2.41 14.83 11.11 7.76 155.91 69.37 58.10 9.95 10.41 25.27 8 E2_Aa NovelBoundary 0 10.67 22.50 6.00 1.96 7.98 10.28 10.95 8.67 12.18 9.67 0.00 0.00 0.00 0.00 0.00 4.02 0.00 10.49 0.00 8.88 8.96 0.00 0.00 9 ER2a ExonRegion 0 2.77 2.81 1.71 1.45 3.43 4.10 2.37 6.32 8.16 3.29 2.10 1.53 1.68 1.84 3.59 2.58 4.04 8.05 6.41 6.05 10.13 2.29 3.41 10 E2_Ab KnownBoundary 0 9.33 0.00 1.51 0.00 8.32 0.00 8.30 4.48 11.00 3.71 5.05 0.00 0.00 2.30 19.78 6.49 9.26 19.69 0.00 11.63 17.79 0.00 10.84 11 ER2b ExonRegion 0 11.13 37.98 75.14 39.88 28.22 51.58 35.41 52.16 54.70 69.00 18.42 0.98 5.90 15.30 24.15 20.47 28.22 162.60 45.16 88.78 27.51 7.46 27.42 12 E2_Da NovelBoundary 0 0.00 5.92 3.25 6.33 4.24 17.04 1.72 4.44 3.12 5.78 7.21 0.00 0.00 9.54 4.45 4.36 0.00 9.16 4.52 2.43 8.71 2.82 8.11 13 E2a_E3a KnownJunction 0 3.33 50.45 111.14 45.88 35.65 104.20 49.59 67.44 72.60 87.54 13.95 12.15 0.00 12.13 17.80 14.70 20.57 102.39 17.60 78.36 8.83 5.51 27.83 14 I2_AR2 ActiveIntronRegion 0 4.47 3.52 6.03 7.85 6.10 4.16 10.86 4.95 0.21 3.58 3.34 0.62 12.40 1.57 1.77 6.32 4.87 2.94 1.38 10.01 15.20 11.97 8.56 15 E3_Aa NovelBoundary 0 12.08 0.00 3.08 5.23 3.90 10.22 15.99 0.00 0.00 0.00 2.37 25.21 13.64 0.00 0.00 8.46 0.00 7.59 0.00 9.14 8.09 8.76 0.00 16 ER3a ExonRegion 0 17.85 83.76 127.07 55.59 90.36 146.09 70.60 89.82 88.10 116.51 26.17 16.84 25.78 13.67 19.47 14.89 41.11 137.87 46.07 111.02 21.51 23.06 30.30 17 E3_Da NovelBoundary 0 31.71 29.60 23.30 21.01 15.62 7.78 37.36 14.38 15.74 8.52 2.05 12.60 21.91 4.94 4.45 3.93 8.79 33.99 12.71 47.49 8.34 4.90 3.76 18 E3a_E4a KnownJunction 0 29.86 83.74 82.82 42.82 60.02 66.33 36.52 104.08 87.99 117.71 34.22 18.46 34.25 4.89 24.35 22.90 43.10 158.64 80.28 116.65 33.55 34.60 26.55 19 E3a_E5a KnownJunction 0 3.70 11.77 20.84 18.05 3.23 7.84 2.25 8.34 7.64 14.08 0.00 6.30 13.80 0.00 0.00 0.00 8.88 23.05 9.32 11.76 2.47 0.00 0.00 20 I3 Intron 0 11.55 26.55 18.20 21.30 22.38 14.81 17.98 14.48 19.94 13.28 2.17 8.16 12.77 3.07 5.07 6.09 4.74 18.51 11.83 26.58 2.95 3.32 4.80 21 I3_AR1 ActiveIntronRegion 0 14.98 22.70 20.21 20.10 24.13 12.76 20.29 7.99 14.62 9.89 1.79 10.77 12.46 3.02 4.81 6.47 4.61 17.22 14.93 21.72 3.87 3.29 2.92 22 I3_SR1 SilentIntronRegion 0 10.47 29.28 18.25 22.23 21.92 13.67 16.70 15.42 18.80 12.86 2.16 8.00 12.23 2.98 5.31 5.84 4.68 16.08 11.57 25.64 2.54 3.27 4.47 23 I3_AR2 ActiveIntronRegion 0 14.31 31.23 23.46 23.74 32.82 21.96 24.81 20.40 34.85 20.64 1.68 9.18 16.10 3.10 5.24 5.74 4.46 23.18 9.85 38.64 4.04 4.23 3.97 24 I3_SR2 SilentIntronRegion 0 12.58 22.96 13.98 22.86 28.43 19.27 19.55 14.71 25.51 13.22 4.89 13.20 12.64 5.55 2.28 8.56 3.70 38.07 17.46 41.10 3.70 1.08 10.25 25 I3_AR3 ActiveIntronRegion 0 16.55 15.44 22.06 25.40 14.72 9.00 8.61 33.31 30.54 13.92 1.32 9.45 21.96 7.16 12.66 6.89 6.15 49.64 32.00 37.91 4.71 2.75 10.28 26 I3_AR4 ActiveIntronRegion 0 12.06 15.86 20.71 20.31 18.73 8.25 7.28 33.53 32.98 20.64 1.93 6.06 30.02 4.71 11.61 6.24 3.96 41.20 17.52 35.74 3.97 7.29 9.40 27 I3_AR5 ActiveIntronRegion 1 9.97 15.51 16.34 18.34 13.82 17.34 8.88 23.77 33.91 22.22 1.93 11.55 35.37 5.41 8.34 6.44 6.60 35.34 19.24 39.01 1.74 9.20 8.81 28 I3_AR6 ActiveIntronRegion 1 5.93 15.46 8.58 14.83 10.49 13.06 12.55 12.93 22.08 17.71 1.16 9.52 36.58 8.45 4.18 2.85 5.55 25.57 8.15 33.19 2.20 7.25 6.46 29 I3_AR7 ActiveIntronRegion 0 15.12 25.66 6.70 7.08 36.69 34.19 37.50 7.13 9.77 8.45 0.41 6.46 13.17 3.05 4.55 4.24 0.73 15.10 6.77 25.51 2.03 2.68 7.77 30 I3_SR3 SilentIntronRegion 0 11.11 15.95 16.55 20.01 12.51 13.19 14.09 13.15 21.58 14.75 3.06 5.13 11.63 2.70 4.47 7.48 6.65 24.66 11.23 25.10 3.49 3.30 6.97 31 E4_Aa NovelBoundary 0 25.56 11.84 36.69 21.28 12.56 24.30 14.53 9.36 27.43 12.06 0.00 0.00 0.00 4.94 9.64 0.00 4.30 43.61 28.33 15.72 5.62 2.76 3.24 32 ER4a ExonRegion 0 30.07 77.21 98.71 56.02 69.14 64.33 34.59 91.35 75.46 114.32 25.20 34.88 27.47 18.02 23.76 25.00 27.48 152.23 50.01 128.89 28.07 23.20 41.60 33 E4_Da NovelBoundary 0 9.93 28.74 59.73 44.12 24.87 26.58 44.43 38.53 46.35 47.87 16.06 5.55 12.34 4.59 22.87 15.38 17.02 87.92 46.02 54.59 10.56 16.29 15.11 34 E4a_E5a KnownJunction 0 17.11 47.82 45.36 30.47 30.98 30.21 1.94 61.16 49.74 58.75 0.00 30.46 6.82 18.36 13.35 7.69 16.46 70.93 9.04 59.57 20.45 5.69 31.41 35 E4a_E6a NovelJunction 0 0.00 3.03 15.26 0.00 0.00 0.00 7.73 0.00 3.24 0.00 2.11 5.70 0.00 0.00 0.00 0.00 0.00 6.18 4.24 5.82 0.00 0.00 0.00 36 I4 Intron 0 27.37 57.86 23.43 25.53 32.41 23.49 26.10 27.29 28.43 23.56 4.71 11.81 22.28 4.42 5.98 5.93 8.30 18.80 9.66 34.85 5.36 6.03 5.04 37 I4_SR1 SilentIntronRegion 0 3.76 10.80 17.05 8.13 10.00 11.60 13.32 12.25 12.38 5.44 3.06 1.93 8.55 3.29 5.56 6.35 3.53 14.57 17.84 12.75 3.53 3.34 6.46 38 I4_SR2 SilentIntronRegion 0 40.12 44.83 3.95 2.60 11.31 4.17 10.95 8.72 5.17 3.91 0.00 0.00 0.00 2.07 2.11 3.24 0.00 1.60 4.34 17.99 0.00 6.53 3.74 39 I4_AR3 ActiveIntronRegion 0 25.35 67.69 25.09 18.21 20.48 10.85 19.14 20.24 25.58 16.25 2.63 8.33 18.90 4.95 5.19 7.36 6.15 10.26 9.40 38.43 3.89 8.03 3.18 40 I4_SR3 SilentIntronRegion 0 37.19 172.56 32.56 23.75 24.08 2.36 17.02 20.25 31.05 27.36 3.87 4.33 18.76 1.62 13.68 4.25 3.30 9.24 11.83 58.05 6.61 7.74 2.94 41 I4_AR4 ActiveIntronRegion 0 44.22 187.60 26.13 20.98 18.16 7.27 11.92 19.75 28.94 24.99 3.87 10.82 19.10 3.07 5.60 2.97 8.37 7.46 12.51 50.23 4.41 3.35 2.20 42 I4_AR5 ActiveIntronRegion 1 38.57 159.97 22.06 23.47 5.95 24.65 12.06 22.09 29.51 21.41 2.15 12.99 34.91 3.25 5.80 4.95 12.84 3.08 8.14 44.44 3.67 5.09 0.00 43 I4_SR4 SilentIntronRegion 0 28.51 85.84 27.53 31.84 31.12 23.51 28.27 27.91 30.38 23.83 5.08 14.34 30.98 4.71 7.72 6.80 7.61 10.12 8.01 39.02 5.05 7.92 5.03 44 I4_AR6 ActiveIntronRegion 0 20.15 43.24 22.20 25.51 36.15 21.85 26.77 28.50 31.81 22.42 4.90 16.74 27.60 4.39 4.11 5.97 10.22 20.98 8.99 35.18 8.50 5.29 5.51 45 I4_SR5 SilentIntronRegion 0 20.04 37.01 14.72 27.48 45.71 35.03 18.95 29.01 26.90 28.44 8.34 6.85 24.54 8.82 5.27 3.86 11.61 22.33 13.38 40.28 10.43 10.35 3.23 46 I4_AR7 ActiveIntronRegion 0 31.75 59.67 25.05 29.14 37.93 27.94 30.04 32.27 29.84 33.73 4.89 10.66 23.93 4.49 4.04 5.60 9.93 21.75 8.56 40.45 4.74 6.50 4.95 47 I4_SR6 SilentIntronRegion 0 42.47 52.39 23.29 29.63 42.95 35.98 33.05 33.28 32.05 26.61 6.05 13.00 14.20 4.12 10.22 5.19 8.50 32.20 10.22 30.63 4.13 4.02 5.82 48 E5_Aa NovelBoundary 0 30.01 37.76 34.59 32.10 55.77 42.82 36.74 17.79 24.59 24.39 5.37 19.66 26.13 7.36 11.37 3.85 9.26 51.07 3.58 17.58 3.15 12.49 0.00 49 ER5a ExonRegion 0 42.94 93.70 113.10 91.62 86.87 101.36 78.37 116.20 113.11 135.60 24.21 31.94 38.07 18.37 40.48 33.26 19.29 182.52 59.08 124.56 31.17 22.68 30.11 50 E5_Da NovelBoundary 0 21.26 35.52 37.20 31.70 18.93 17.89 19.12 33.31 26.65 18.37 7.16 12.60 33.76 4.59 24.97 0.00 12.90 66.91 12.33 39.44 5.25 7.41 0.00 51 E5a_E6a KnownJunction 0 65.20 123.79 94.73 108.98 126.83 109.43 69.73 108.02 93.43 135.30 29.95 37.36 28.73 19.37 69.84 24.61 14.31 208.68 67.01 120.36 63.51 30.86 54.29 52 I5 Intron 0 25.02 24.36 26.95 18.36 25.64 24.51 16.06 25.67 27.45 17.96 4.48 6.38 8.61 5.29 5.62 10.11 5.10 44.87 11.07 28.28 8.85 3.70 6.13 53 I5_SR1 SilentIntronRegion 0 23.43 25.22 26.28 15.98 20.83 22.33 16.39 22.80 27.48 17.41 4.27 6.68 8.55 4.71 5.67 12.18 6.59 50.49 8.99 28.19 9.50 2.94 4.19 54 I5_AR1 ActiveIntronRegion 0 28.39 23.34 28.72 23.00 34.80 28.94 15.77 31.33 27.95 19.33 4.89 5.97 8.90 6.43 5.64 6.61 2.56 35.74 15.01 29.03 7.87 5.12 9.72 55 E6_Aa NovelBoundary 0 34.38 60.12 19.01 14.25 15.79 18.46 18.55 29.82 23.03 10.02 5.16 6.30 0.00 3.00 15.20 3.42 0.00 33.33 14.40 40.84 2.84 13.35 6.91 56 ER6a ExonRegion 0 40.96 95.64 105.32 83.64 89.17 122.86 56.21 107.10 100.51 122.76 21.76 44.49 33.63 18.89 43.33 25.19 20.56 194.00 69.96 93.39 32.74 32.21 38.26 57 E6a_E7a KnownJunction 0 50.45 79.46 92.46 80.51 81.24 96.76 26.54 75.99 87.70 113.71 13.69 18.16 13.64 19.01 28.93 15.12 12.44 122.45 85.56 58.42 16.49 28.29 7.85 58 E6a_E8a NovelJunction 0 13.78 35.45 49.64 20.84 16.81 43.78 37.19 48.88 41.29 28.42 5.37 6.30 6.82 2.47 16.69 7.60 13.74 92.48 26.26 41.16 8.77 5.08 4.35 59 E7_Aa NovelBoundary 0 6.67 9.54 14.69 18.11 12.14 11.07 14.35 23.17 8.25 14.96 4.32 6.15 0.00 0.00 13.35 8.63 0.00 16.91 0.00 8.25 2.47 0.00 4.35 60 ER7a ExonRegion 0 39.19 78.16 105.65 63.34 57.71 97.99 40.94 83.42 80.27 123.59 14.43 12.99 22.89 18.03 33.27 19.74 21.25 152.42 51.71 70.66 31.17 25.89 19.20 61 E7_Da NovelBoundary 0 7.33 2.63 14.22 14.32 25.13 0.00 2.12 7.56 11.52 11.07 0.00 0.00 0.00 0.00 14.09 3.25 0.00 9.95 0.00 15.15 0.00 6.00 7.85 62 E7a_E8a KnownJunction 0 47.71 109.19 128.11 75.41 60.78 147.81 61.65 95.87 91.32 157.68 19.11 16.51 0.00 24.37 25.22 7.35 8.60 157.81 52.43 61.04 20.45 29.27 10.76 63 E8_Aa NovelBoundary 0 6.45 6.71 16.62 3.06 4.16 14.42 8.92 26.66 19.91 15.63 0.00 0.00 0.00 0.00 0.00 4.27 3.93 12.85 13.55 6.07 2.84 2.57 4.01 64 ER8a ExonRegion 0 38.62 80.26 134.33 70.39 39.94 79.23 44.93 104.77 95.97 134.39 18.43 8.95 23.01 19.20 46.53 25.48 18.89 160.72 54.82 109.18 30.59 22.82 22.65