Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DHODH Gene 0 33.71 29.38 42.25 25.49 23.72 26.14 21.91 16.60 10.59 27.14 53.76 20.49 26.83 65.23 54.96 55.35 54.47 36.61 31.47 27.53 22.31 15.07 24.07 2 219240 Transcript 0 14.86 12.76 28.93 19.09 12.06 15.99 11.46 10.86 7.34 22.49 58.28 12.41 22.48 72.41 58.31 42.06 47.70 35.16 26.67 25.29 20.05 11.21 13.28 3 378782 Transcript 0 0.00 0.00 6.27 2.06 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 4.58 0.00 0.00 3.26 0.00 0.00 0.00 4 ER1a ExonRegion 1 43.44 67.69 7.24 8.63 12.55 45.54 41.36 1.44 1.00 12.37 65.12 0.00 0.00 71.89 44.90 85.55 79.06 37.44 21.39 29.03 29.80 4.96 49.64 5 E1_Da NovelBoundary 0 0.00 0.00 0.00 0.00 4.33 0.00 2.25 0.00 3.18 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 13.18 0.00 2.66 0.00 0.00 6 E1a_E2a KnownJunction 1 150.55 199.31 15.64 21.21 78.86 157.35 133.50 2.46 2.78 27.48 183.52 5.25 0.00 151.51 47.59 246.94 238.62 87.88 69.93 84.24 74.32 18.00 141.02 7 ER2a ExonRegion 1 15.25 24.71 19.21 16.78 8.22 20.15 17.12 6.96 4.09 21.95 60.95 7.50 11.89 51.05 39.15 66.66 67.21 39.11 23.82 29.81 23.41 9.68 30.18 8 E2_Da NovelBoundary 1 0.00 0.00 1.21 4.36 0.00 0.00 0.00 2.09 2.63 4.49 2.68 6.30 0.00 2.18 13.23 41.27 0.00 23.34 38.50 0.00 0.00 2.94 21.68 9 E2a_E3a KnownJunction 1 0.00 9.54 35.01 30.03 4.33 5.68 5.74 8.63 4.83 22.78 44.85 6.30 21.10 71.99 42.40 100.83 27.40 58.57 43.58 19.62 7.60 25.35 76.31 10 ER3a ExonRegion 0 20.27 45.14 52.92 28.22 25.33 50.02 32.44 13.24 8.34 28.09 77.68 33.32 32.78 66.71 48.81 49.19 75.66 44.26 40.14 30.11 27.78 17.05 21.91 11 E3_Da NovelBoundary 0 0.00 0.00 0.00 2.03 0.00 17.38 0.00 0.00 1.19 0.00 4.84 6.30 6.82 7.42 0.00 8.29 4.58 0.00 0.00 3.26 0.00 0.00 3.33 12 E3a_E4a KnownJunction 0 46.23 29.07 59.43 19.34 10.27 38.27 19.70 11.13 15.02 47.47 74.33 44.11 28.24 74.22 64.28 55.97 100.05 43.82 25.79 32.85 39.41 19.47 25.01 13 I3 Intron 0 17.07 15.76 8.42 9.88 9.24 5.76 4.07 6.95 7.80 8.74 7.89 10.70 12.16 12.66 10.58 22.39 7.77 11.93 20.99 6.54 12.73 6.87 8.57 14 I3_AR1 ActiveIntronRegion 0 20.29 18.29 10.80 11.68 9.63 6.25 6.18 7.19 8.64 10.87 8.58 16.28 15.63 13.77 14.58 23.61 8.63 12.37 21.00 5.79 13.33 6.81 9.21 15 I3_SR2 SilentIntronRegion 0 20.05 18.16 9.28 11.88 11.94 7.01 3.39 8.92 9.67 9.22 9.47 9.40 12.40 15.43 10.13 28.56 9.78 15.65 28.21 9.28 15.89 8.73 10.71 16 E4_Aa NovelBoundary 0 14.67 24.73 7.63 20.54 8.40 15.05 1.99 8.26 19.15 6.45 4.53 12.30 5.68 19.42 0.00 12.05 17.30 13.27 4.14 9.14 10.81 5.88 8.19 17 ER4a ExonRegion 0 55.69 35.43 33.47 20.28 14.76 15.27 18.38 13.52 10.16 33.40 85.91 35.05 30.97 78.06 78.33 67.75 84.47 33.44 44.75 22.10 24.59 18.80 26.15 18 E4_Da NovelBoundary 0 47.86 29.99 6.06 12.22 15.03 24.87 1.94 9.41 11.55 21.25 9.69 36.61 28.08 19.31 14.83 16.41 29.83 21.39 22.40 8.56 19.03 11.82 8.28 19 E4a_E5a KnownJunction 0 10.96 3.16 22.91 12.69 8.15 4.88 4.06 4.27 5.18 13.08 34.54 12.30 25.97 57.10 59.34 10.85 47.12 16.17 9.60 31.77 6.12 10.47 7.77 20 E4a_E6a NovelJunction 0 0.00 6.12 7.01 3.73 0.00 8.46 3.75 0.00 0.00 2.69 2.16 0.00 5.68 9.01 9.89 0.00 12.62 0.00 9.13 0.00 3.15 0.00 4.18 21 E4a_E7a KnownJunction 0 0.00 0.00 6.27 2.06 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 4.58 0.00 0.00 3.26 0.00 0.00 0.00 22 I4 Intron 0 17.23 14.09 11.54 13.95 8.57 8.85 7.38 8.17 9.70 10.99 9.92 12.17 17.82 18.93 12.85 25.91 15.03 17.21 19.60 9.45 11.12 7.13 12.64 23 I4_AR1 ActiveIntronRegion 0 27.38 18.79 11.47 15.38 11.87 11.52 8.81 9.52 19.38 15.16 11.07 19.11 20.03 23.09 16.46 30.76 19.52 22.91 31.20 9.83 16.29 15.79 13.02 24 I4_SR1 SilentIntronRegion 0 18.33 15.06 14.81 16.23 9.82 9.48 6.42 10.31 10.68 12.41 11.34 9.31 13.38 21.45 13.53 30.75 17.65 20.60 20.30 10.72 12.53 5.70 13.67 25 I4_AR2 ActiveIntronRegion 0 2.28 7.86 10.96 5.07 7.43 7.40 3.93 5.30 3.28 3.84 6.59 14.00 12.45 12.76 6.29 35.67 9.90 12.93 16.42 18.30 16.11 12.59 15.37 26 I4_AR3 ActiveIntronRegion 0 15.32 8.79 9.08 13.83 8.37 8.92 10.73 5.54 6.95 9.79 9.81 15.05 31.48 18.09 13.20 21.51 12.14 13.21 17.90 8.51 6.42 5.85 11.42 27 I4_SR4 SilentIntronRegion 0 10.74 20.08 4.88 7.59 0.00 3.43 3.18 5.50 1.97 5.93 4.65 6.87 3.31 8.42 7.79 6.35 7.92 7.60 6.80 2.27 7.65 1.67 10.18 28 E5_Aa NovelBoundary 0 30.38 16.25 11.56 10.29 0.00 13.57 4.50 12.45 7.38 7.28 14.21 0.00 6.82 14.13 4.45 24.52 9.54 10.45 7.81 2.94 17.48 3.12 31.84 29 ER5a ExonRegion 0 22.56 15.25 25.71 19.26 10.65 14.74 12.32 11.27 7.35 24.10 59.59 12.02 21.90 74.08 54.32 54.45 50.60 46.42 32.68 28.37 24.14 11.16 18.76 30 E5_Da NovelBoundary 0 10.22 6.05 14.75 6.69 7.98 2.61 5.83 8.58 5.18 11.68 8.79 0.00 0.00 11.95 4.45 6.58 4.21 19.94 4.14 6.33 8.96 2.51 18.78 31 E5a_E6a KnownJunction 0 13.04 6.12 12.68 8.02 14.69 5.79 7.82 12.45 3.24 18.45 51.01 11.55 19.97 58.51 48.58 45.20 28.61 30.30 13.37 8.05 19.40 13.10 14.94 32 I5 Intron 0 5.83 6.78 8.20 6.18 8.92 3.45 3.84 2.61 5.07 7.18 6.72 8.49 6.40 12.79 10.09 18.09 9.57 9.58 19.85 4.62 10.85 4.23 8.94 33 I5_SR1 SilentIntronRegion 0 4.89 6.71 5.16 4.19 9.61 4.07 4.63 2.63 2.97 3.75 5.39 6.36 5.75 9.26 8.02 14.51 7.56 6.29 19.22 3.67 8.33 4.32 7.00 34 I5_AR1 ActiveIntronRegion 0 10.07 8.45 16.52 11.22 12.00 3.26 3.49 3.42 10.57 17.87 12.23 13.08 7.73 23.90 18.27 30.93 15.85 20.10 25.97 6.64 19.13 6.23 11.20 35 I5_SR2 SilentIntronRegion 0 2.12 4.25 6.43 5.95 0.00 1.17 1.05 1.10 4.29 2.35 2.37 10.04 7.35 8.05 4.09 10.47 7.13 4.62 12.02 5.51 6.91 0.00 14.42 36 E6_Aa NovelBoundary 1 16.60 14.87 7.78 7.72 3.74 4.71 3.44 5.46 7.93 9.00 7.63 31.36 27.27 17.01 13.35 21.11 8.42 21.43 30.68 0.00 5.19 0.00 8.71 37 ER6a ExonRegion 0 18.12 13.31 43.55 29.35 18.99 23.68 14.35 11.81 12.28 28.41 53.93 8.32 18.60 84.91 55.89 39.89 57.27 29.66 28.36 29.19 26.64 13.03 18.11 38 E6_Da NovelBoundary 0 29.93 18.88 10.08 26.34 32.26 13.86 7.77 11.09 9.64 13.00 9.16 7.65 11.85 14.36 30.16 25.04 8.13 23.09 29.46 2.49 15.14 7.96 16.56 39 E6a_E7a KnownJunction 0 9.63 25.98 39.80 26.10 7.81 30.83 18.77 14.50 8.65 28.42 92.34 17.86 25.97 87.47 73.43 59.90 54.89 53.23 49.32 29.08 23.97 8.27 6.83 40 I6 Intron 0 19.99 12.92 17.56 13.08 10.11 9.29 6.48 7.74 7.27 15.11 10.29 13.64 15.61 20.35 11.75 26.79 17.57 20.27 19.69 7.86 21.19 5.55 16.64 41 I6_AR1 ActiveIntronRegion 0 20.05 12.96 17.62 13.12 10.14 9.32 6.50 7.77 7.29 15.16 10.32 13.69 15.66 20.42 11.79 26.88 17.63 20.33 19.76 7.88 21.26 5.56 16.69 42 E7_Aa NovelBoundary 1 6.89 34.60 9.31 21.68 20.54 21.75 6.45 3.94 8.59 17.16 7.90 12.60 0.00 23.96 19.90 43.32 7.48 22.18 38.40 7.93 17.61 19.59 23.56 43 ER7a ExonRegion 0 38.99 26.95 45.04 27.05 10.42 19.18 18.63 14.14 12.86 30.55 67.94 12.96 32.31 84.13 68.48 70.96 59.63 49.72 28.11 20.03 26.03 19.92 27.19 44 E7_Da NovelBoundary 0 9.48 6.45 1.77 2.03 8.40 0.00 1.77 2.09 4.22 8.41 10.21 5.85 6.49 9.89 25.47 8.72 8.32 16.71 31.53 2.43 19.77 10.65 6.66 45 E7a_E8a KnownJunction 1 53.12 22.96 42.40 32.20 20.12 5.00 21.90 20.70 8.62 42.63 68.44 6.30 0.00 120.55 86.53 66.65 52.92 30.47 44.90 20.65 19.83 14.76 23.39 46 I7 Intron 0 12.54 6.69 7.82 0.67 1.76 3.02 0.87 1.69 2.42 5.06 1.91 9.64 10.44 8.52 9.66 15.65 8.69 7.86 7.34 3.50 7.25 5.48 12.56 47 I7_SR1 SilentIntronRegion 0 13.06 7.01 8.19 0.70 1.84 3.16 0.91 1.78 2.54 5.30 2.00 10.09 10.93 8.86 10.04 16.35 9.10 8.23 7.58 3.62 7.58 5.73 13.04 48 E8_Aa NovelBoundary 1 16.52 15.13 3.16 8.96 4.07 0.00 3.71 3.90 7.47 7.92 2.47 0.00 34.74 16.48 8.90 26.66 14.03 18.86 12.05 0.00 17.67 3.06 0.00 49 ER8a ExonRegion 0 59.08 23.96 48.99 26.91 20.55 23.58 21.83 17.80 12.66 30.39 60.84 14.83 27.64 89.88 77.54 69.73 49.66 54.12 34.90 26.08 25.47 16.75 23.09 50 E8_Da NovelBoundary 1 13.85 8.49 4.20 8.36 0.00 0.00 2.25 8.17 11.23 11.04 10.27 18.91 55.03 4.71 8.90 25.12 8.88 20.89 8.85 5.82 14.39 12.19 11.95 51 E8a_E9a KnownJunction 1 20.74 22.23 52.63 31.73 65.11 45.77 11.57 22.76 5.41 32.74 60.96 0.00 6.82 112.43 98.40 78.87 38.71 30.51 30.59 25.89 17.11 11.45 11.27 52 I8 Intron 0 12.89 7.10 5.29 7.70 8.55 4.21 3.30 5.66 9.74 9.90 7.14 14.72 28.33 17.60 10.73 27.88 8.24 12.93 26.70 11.68 11.88 6.03 14.36 53 I8_SR1 SilentIntronRegion 0 12.04 7.05 6.00 7.99 9.47 4.11 3.71 6.10 10.07 12.35 9.17 16.29 30.13 19.94 11.20 32.77 7.50 14.26 31.06 12.50 14.71 6.06 16.69 54 I8_AR1 ActiveIntronRegion 0 15.28 7.34 3.50 7.06 6.26 4.53 2.29 4.57 9.00 3.63 1.93 10.81 24.02 11.75 9.65 15.51 10.28 9.63 15.70 9.70 4.66 6.01 8.48 55 E9_Aa NovelBoundary 1 16.82 5.33 7.42 7.09 19.78 0.00 8.92 6.53 11.20 7.98 0.00 6.30 19.64 12.36 10.75 20.25 8.98 9.74 18.54 14.89 0.00 0.00 8.45 56 ER9a ExonRegion 0 37.44 30.99 49.31 28.46 34.42 26.67 23.63 22.48 12.80 27.58 38.50 25.87 30.85 54.94 52.10 48.49 43.38 28.16 30.71 28.01 18.19 15.98 23.24 57 IG33_AR1 ActiveIntergenicRegion 0 28.15 16.87 36.30 23.79 32.32 12.75 18.25 11.00 7.41 19.18 19.57 31.35 34.95 21.85 27.32 35.90 14.50 12.11 17.88 12.72 6.99 10.42 9.67 58 IG33_SR1 SilentIntergenicRegion 0 4.00 7.23 7.26 2.73 6.10 2.61 1.76 6.13 0.01 5.68 8.08 5.08 11.19 15.23 17.94 9.58 14.51 8.99 3.97 2.90 3.15 3.75 3.56 59 IG33_AR2 ActiveIntergenicRegion 0 3.70 6.71 12.25 4.43 0.00 1.10 3.38 7.43 2.66 11.87 10.63 15.59 22.28 20.06 18.28 28.98 10.73 14.97 7.96 8.83 8.04 2.81 2.94 60 IG33_SR2 SilentIntergenicRegion 0 7.41 7.84 10.57 6.94 6.16 3.73 3.08 4.70 2.87 7.28 7.32 8.57 13.13 15.71 12.90 20.51 10.83 12.19 9.71 8.11 9.38 3.09 7.02 61 IG33_AR6 ActiveIntergenicRegion 0 3.60 3.93 2.07 0.48 3.45 0.00 0.00 0.00 2.09 0.97 1.10 22.22 15.32 1.68 3.48 13.44 1.87 0.35 21.66 4.82 9.40 2.36 4.99