Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC108084.1 Gene 0 26.49 186.86 137.63 34.28 49.84 85.12 131.78 4.12 1.87 16.04 0.00 3.63 33.14 0.30 10.43 0.00 10.57 55.05 44.96 102.94 23.40 116.27 34.61 2 502066 Transcript 0 12.58 102.79 77.97 20.43 46.55 65.34 98.28 2.01 1.32 8.21 0.00 1.78 24.46 0.00 4.52 0.00 5.95 37.29 32.24 87.81 8.06 67.06 14.97 3 501177 Transcript 0 4.38 23.30 13.70 2.89 0.78 9.86 32.47 0.00 0.00 5.49 0.00 0.00 9.60 0.00 0.00 0.00 0.00 12.01 5.28 7.88 7.79 20.50 11.69 4 IG29_AR1 ActiveIntergenicRegion 0 0.00 0.00 0.38 0.00 0.00 8.08 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.21 7.35 8.04 3.70 1.75 7.40 5 ER1a ExonRegion 0 0.00 21.16 2.31 0.00 0.79 7.34 9.07 0.00 0.00 0.04 0.00 0.00 0.52 0.00 0.00 0.00 0.86 8.21 5.07 17.81 4.90 5.32 2.72 6 E2_Aa NovelBoundary 0 0.00 12.83 4.17 1.30 0.00 8.52 3.84 2.55 0.00 0.00 0.00 0.00 13.47 0.00 0.00 0.00 4.77 20.40 0.00 20.13 8.46 3.12 7.68 7 ER2a ExonRegion 0 2.19 17.53 5.98 1.62 2.35 12.08 27.46 0.00 0.00 4.01 0.00 0.00 0.08 0.00 0.00 0.00 0.00 4.21 1.43 9.06 6.76 3.95 2.63 8 E2a_E3a KnownJunction 0 10.96 33.61 15.20 3.16 0.00 14.99 69.95 0.00 0.00 9.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.73 4.80 14.57 8.46 16.72 12.38 9 E3_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.00 1.32 0.00 0.00 6.82 0.00 0.00 0.00 0.00 13.02 9.41 9.14 11.55 3.12 0.00 10 ER3a ExonRegion 0 13.86 163.91 61.08 11.72 35.92 72.04 116.47 3.00 1.99 10.47 0.00 1.95 6.64 0.60 5.98 0.00 10.78 111.83 47.36 90.81 71.38 65.64 50.81 11 E3_Da NovelBoundary 0 0.00 33.68 0.00 0.00 0.00 0.00 17.53 0.00 1.16 5.67 0.00 0.00 0.00 0.00 0.00 0.00 4.68 47.55 13.37 30.36 17.36 13.90 23.22 12 E3a_E4a KnownJunction 0 13.78 123.73 98.07 22.04 50.59 93.81 135.40 6.70 1.79 11.20 0.00 6.00 12.66 0.00 13.35 0.00 12.34 153.46 93.84 146.05 32.43 82.42 107.05 13 I3 Intron 0 3.81 37.72 2.94 2.13 13.44 9.69 28.53 0.48 0.69 1.60 0.00 1.26 24.89 0.15 0.45 0.00 1.11 7.07 3.70 22.48 5.28 43.96 6.93 14 I3_SR1 SilentIntronRegion 0 1.66 31.88 1.91 1.52 10.09 5.08 15.90 0.00 0.45 1.18 0.00 1.36 30.71 0.17 0.27 0.00 0.43 9.32 3.58 19.56 6.32 38.48 5.36 15 I3_AR1 ActiveIntronRegion 0 4.96 66.59 0.89 1.52 9.93 9.57 34.89 0.00 1.92 3.15 0.00 0.15 33.53 0.00 0.13 0.00 4.40 4.48 3.48 29.10 6.51 46.77 7.97 16 I3_SR2 SilentIntronRegion 0 3.37 36.91 1.26 2.59 8.31 3.42 21.07 0.00 1.39 1.40 0.00 0.00 24.74 0.00 0.58 0.00 2.87 5.87 4.60 21.16 8.42 48.59 7.84 17 I3_AR2 ActiveIntronRegion 0 3.93 37.28 2.67 2.28 15.61 12.26 34.02 1.30 0.78 1.53 0.00 2.44 17.28 0.28 0.10 0.00 1.05 3.79 3.34 21.37 3.05 44.36 5.27 18 I3_AR3 ActiveIntronRegion 0 4.23 31.22 6.37 3.13 20.60 15.68 39.06 1.73 0.00 1.89 0.00 0.00 22.04 0.00 2.90 0.00 0.00 10.53 5.26 26.81 0.00 65.01 17.03 19 I3_SR3 SilentIntronRegion 0 8.06 40.82 6.56 3.18 30.35 20.09 48.29 0.00 0.00 1.16 0.00 0.00 35.40 0.00 0.44 0.00 0.00 9.20 4.49 28.09 4.91 59.17 9.76 20 I3_AR4 ActiveIntronRegion 0 6.58 38.02 7.50 2.40 11.08 13.67 35.94 0.00 0.00 2.64 0.00 0.00 23.08 0.00 1.97 0.00 0.00 13.76 3.68 28.34 6.94 37.68 12.53 21 E4_Aa NovelBoundary 0 0.00 23.35 5.35 0.00 34.89 29.13 22.96 0.00 0.00 1.05 0.00 0.00 33.11 0.00 0.00 0.00 0.00 11.03 13.93 20.58 3.15 48.62 3.67 22 ER4a ExonRegion 0 11.64 87.38 129.72 19.72 53.11 64.32 109.49 5.81 1.42 14.56 0.00 2.16 28.71 0.00 10.64 0.00 22.06 127.75 68.87 140.04 30.22 97.55 80.36 23 E4_Da NovelBoundary 0 3.78 69.59 9.49 8.89 11.63 27.77 11.92 0.00 4.48 4.49 0.00 0.00 12.50 0.00 0.00 0.00 0.00 48.83 19.11 84.43 20.45 35.09 41.23 24 E4a_E5a KnownJunction 0 17.34 101.56 122.73 22.14 91.51 76.21 131.60 4.27 2.66 12.68 0.00 0.00 21.91 0.00 0.00 0.00 8.23 64.25 44.90 146.95 11.18 68.09 14.17 25 E4a_E5b KnownJunction 0 0.00 18.75 19.93 3.90 0.00 2.50 0.00 0.00 0.00 2.66 0.00 0.00 28.73 0.00 0.00 0.00 0.00 12.10 9.60 0.00 8.15 40.84 20.06 26 I4 Intron 0 16.48 101.99 34.28 14.09 17.38 84.72 43.68 2.18 2.52 10.63 0.00 2.09 39.93 0.31 1.76 0.19 5.81 48.33 12.76 61.39 16.04 53.64 26.16 27 I4_AR1 ActiveIntronRegion 0 4.37 66.91 13.74 10.64 13.87 44.85 23.72 0.87 1.98 5.65 0.00 1.20 28.19 0.00 1.58 0.00 5.95 83.17 11.83 68.01 27.64 55.09 32.87 28 I4_SR1 SilentIntronRegion 0 13.07 81.94 16.51 7.78 10.50 63.58 35.37 0.95 2.74 7.56 0.00 1.16 28.62 0.76 1.86 0.00 7.28 109.31 17.33 67.13 33.83 50.58 40.81 29 I4_AR2 ActiveIntronRegion 0 16.52 109.15 20.83 7.22 12.84 83.41 43.38 1.29 2.95 13.24 0.00 1.05 52.59 0.00 0.86 0.00 7.53 30.76 10.24 63.03 15.75 65.28 33.66 30 I4_AR3 ActiveIntronRegion 0 11.29 75.26 29.18 11.71 11.66 86.55 40.50 2.75 2.56 11.49 0.00 0.89 41.17 0.00 1.66 1.30 4.66 13.77 4.19 63.13 10.23 56.44 13.61 31 I4_SR2 SilentIntronRegion 0 17.43 80.36 25.69 10.14 17.17 100.64 37.79 1.90 1.41 11.61 0.00 2.16 33.27 0.00 0.00 0.00 0.98 13.28 4.81 46.68 3.57 47.81 17.50 32 I4_AR4 ActiveIntronRegion 0 21.88 123.34 41.69 16.41 20.79 98.63 54.33 2.93 2.15 11.58 0.00 2.52 49.75 0.56 2.48 0.33 7.18 39.56 15.67 64.03 13.15 46.89 24.73 33 I4_SR3 SilentIntronRegion 0 8.62 109.30 53.26 23.46 28.38 148.73 48.84 3.46 2.65 18.06 0.00 0.93 41.88 1.04 2.90 0.00 6.96 27.06 20.48 81.84 10.55 68.16 19.93 34 I4_AR5 ActiveIntronRegion 0 19.37 114.86 58.35 22.60 24.09 96.12 47.12 3.04 3.08 12.15 0.00 3.71 35.23 0.00 1.47 0.00 2.85 20.85 10.57 50.00 4.17 59.00 14.95 35 E5_Aa NovelBoundary 0 31.12 143.40 97.99 30.83 41.94 121.86 78.57 7.64 2.92 5.51 0.00 12.60 50.00 0.00 5.56 0.00 0.00 32.08 4.71 56.44 2.47 93.38 23.05 36 ER5a ExonRegion 0 24.79 258.85 172.84 57.55 82.31 163.30 238.08 3.77 2.63 19.37 0.00 1.08 67.06 0.00 14.99 0.00 13.79 75.69 78.99 161.52 16.16 185.51 37.37 37 E5_Da NovelBoundary 0 26.08 256.99 134.53 54.34 6.88 72.34 35.99 5.96 6.60 25.76 0.00 6.30 67.53 0.00 0.00 0.00 0.00 29.51 4.33 66.92 8.34 84.62 24.16 38 E5a_E6a KnownJunction 0 19.41 232.92 110.49 42.09 58.06 77.40 207.17 8.50 4.40 23.18 0.00 16.66 15.26 0.00 33.62 0.00 12.72 31.59 29.93 91.98 17.17 178.86 28.60 39 ER5b ExonRegion 0 18.03 309.67 158.41 51.79 58.59 90.24 225.26 5.36 3.41 22.19 0.00 12.99 34.29 0.00 19.31 0.00 16.62 61.93 66.67 108.80 18.92 190.39 46.58 40 I5 Intron 0 44.83 163.67 100.69 36.45 24.53 104.60 52.13 1.74 2.04 13.85 0.00 2.41 27.17 0.47 5.48 0.00 3.34 26.00 12.30 45.58 8.19 63.03 17.71 41 I5_AR1 ActiveIntronRegion 0 27.11 139.65 84.29 32.15 27.73 120.40 50.29 1.47 2.61 15.73 0.00 2.50 31.63 0.34 2.60 0.00 4.75 26.70 21.08 44.17 7.75 65.60 18.05 42 I5_AR2 ActiveIntronRegion 0 31.23 176.60 111.22 43.81 24.88 94.98 41.83 2.78 4.51 22.30 0.00 0.00 27.04 0.78 8.48 0.00 3.86 52.70 24.16 60.79 7.78 125.04 31.08 43 I5_AR3 ActiveIntronRegion 0 43.92 174.38 109.07 34.88 29.41 134.29 62.17 2.07 2.53 19.01 0.00 7.17 24.09 0.00 6.74 0.00 5.26 26.95 12.44 53.59 5.88 41.65 17.25 44 I5_AR4 ActiveIntronRegion 0 52.58 169.01 103.92 37.35 22.79 96.46 52.65 1.66 1.50 11.52 0.00 1.98 26.17 0.54 5.92 0.00 2.55 22.55 8.01 43.17 8.75 58.22 16.14 45 E6_Aa NovelBoundary 0 23.26 176.61 121.91 38.89 15.53 92.90 44.12 11.75 0.00 11.98 0.00 0.00 66.23 0.00 20.15 0.00 4.77 11.57 0.00 40.52 5.62 41.70 8.62 46 ER6a ExonRegion 0 47.20 262.69 218.89 53.53 64.99 105.69 154.53 6.10 2.43 23.61 0.00 5.17 48.76 0.51 14.29 0.00 10.89 31.85 46.15 121.51 14.09 164.54 29.65 47 E6_Da KnownBoundary 0 3.78 87.16 63.27 10.49 30.31 25.78 51.45 0.00 0.00 2.58 0.00 12.60 27.27 0.00 4.82 0.00 4.11 2.32 0.00 72.99 2.29 18.92 6.91 48 ER6b ExonRegion 0 8.19 29.58 14.01 2.01 11.58 14.51 14.36 0.00 0.00 0.75 0.00 6.02 8.36 0.00 3.09 0.00 0.93 1.00 0.00 24.98 0.00 9.33 5.62 49 IG28_SR9 SilentIntergenicRegion 0 7.68 26.05 9.77 6.74 5.80 14.24 17.43 0.17 0.37 1.97 0.00 0.16 2.88 0.00 0.15 0.00 0.58 11.66 3.88 19.11 0.93 4.89 2.73 50 IG28_AR8 ActiveIntergenicRegion 0 19.25 28.48 26.50 13.70 12.85 23.61 24.90 0.00 0.38 1.75 0.00 0.00 6.03 0.00 0.59 0.00 0.67 9.88 3.58 11.74 0.45 5.75 0.60 51 IG28_SR8 SilentIntergenicRegion 0 4.84 1.55 4.78 4.61 2.17 16.85 8.13 0.00 0.00 1.58 0.00 0.00 0.67 0.00 0.00 0.00 0.00 5.63 1.82 7.90 0.00 1.89 0.00 52 IG28_AR7 ActiveIntergenicRegion 0 9.17 6.10 8.58 6.81 8.03 27.81 9.27 0.00 0.62 3.25 0.00 0.00 4.69 0.00 0.00 0.00 0.00 7.39 3.19 10.64 0.00 2.08 0.00 53 IG28_AR4 ActiveIntergenicRegion 0 9.64 4.53 4.80 3.29 4.87 15.77 5.76 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.41 0.00 0.00 1.02 0.00 1.08 0.22 2.11 0.00