Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 EXOC3L Gene 0 21.07 3.27 83.47 11.26 10.22 50.81 4.75 17.46 17.60 16.71 0.11 0.07 0.23 0.40 0.65 0.64 0.26 7.90 18.72 6.00 4.19 5.72 3.97 2 314586 Transcript 0 13.36 0.99 67.30 8.85 11.95 32.72 2.88 11.81 12.46 12.67 0.19 0.00 0.11 0.05 0.11 0.00 0.00 2.94 12.04 1.63 1.36 3.47 2.14 3 314553 Transcript 0 4.18 0.92 18.76 1.73 1.62 14.24 1.22 5.66 5.88 5.04 0.00 0.00 0.32 0.37 0.24 0.15 0.00 3.62 5.09 2.41 1.83 1.92 0.52 4 ER1a ExonRegion 0 2.77 1.19 0.00 0.00 2.31 1.14 0.87 0.00 1.62 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 0.00 5 ER1b ExonRegion 0 16.46 2.87 25.52 3.52 6.97 62.13 2.84 4.92 5.76 6.22 0.00 0.00 0.00 0.00 0.00 0.70 0.00 4.37 17.03 0.74 0.55 4.15 2.92 6 E1a_E2a KnownJunction 0 0.00 0.00 28.41 3.73 6.79 2.90 0.00 4.23 9.17 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.94 3.13 0.00 0.00 0.00 7 I1 Intron 0 0.75 1.08 8.11 1.80 1.43 18.59 1.41 3.66 5.56 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.10 7.36 1.51 0.78 1.48 0.00 8 I1_SR1 SilentIntronRegion 0 0.42 0.59 8.84 1.96 1.18 21.03 1.72 4.38 6.09 2.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.60 6.63 1.73 0.95 1.80 0.00 9 E2_Aa NovelBoundary 0 3.04 0.00 12.92 0.00 3.90 37.88 0.00 6.82 3.30 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 4.05 2.68 0.00 0.00 0.00 10 ER2a ExonRegion 0 4.55 0.00 46.26 7.17 5.25 16.82 1.05 6.29 10.60 8.96 0.00 0.00 0.00 0.00 0.00 0.17 0.00 2.61 19.59 3.29 0.00 1.81 3.60 11 E2a_E3a KnownJunction 0 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 12 E2a_E3b KnownJunction 0 7.41 0.00 60.73 9.49 0.00 31.40 5.79 13.60 11.52 10.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 21.74 0.00 0.00 5.69 7.85 13 ER3a ExonRegion 0 0.53 0.00 8.19 0.51 0.00 3.44 0.25 0.76 2.70 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 4.18 0.00 0.00 0.52 0.37 14 ER3b ExonRegion 0 5.95 1.89 58.70 5.36 10.70 38.67 3.30 8.29 12.36 13.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.31 10.13 0.68 0.00 4.02 0.77 15 E3a_E4a KnownJunction 0 0.00 5.39 48.67 8.22 16.13 81.71 6.62 10.06 10.47 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.48 4.80 0.00 0.00 0.00 3.24 16 ER4a ExonRegion 0 8.01 5.28 46.07 2.65 8.24 61.46 3.18 10.23 9.45 16.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 2.75 0.00 0.00 7.26 2.94 17 E4_Da KnownBoundary 0 23.34 11.31 77.26 3.46 3.82 61.67 4.50 12.94 12.76 17.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.56 0.00 0.00 0.00 13.78 3.16 18 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER4b ExonRegion 0 11.15 2.38 53.07 3.87 7.90 46.94 2.05 8.24 15.56 11.93 0.00 0.00 1.08 0.00 1.14 0.00 0.00 4.60 1.67 0.59 2.46 4.18 1.94 20 E4_Db NovelBoundary 0 0.00 2.63 24.10 4.13 0.00 29.76 1.68 6.49 10.73 2.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 9.22 0.00 2.66 3.12 0.00 21 E4b_E5a KnownJunction 0 6.67 0.00 56.77 3.06 21.05 27.31 0.00 5.46 10.97 8.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.69 3.67 22 I4 Intron 0 2.97 0.57 9.38 3.98 5.25 23.47 2.23 2.41 3.27 3.67 0.00 0.33 0.36 0.00 0.38 0.00 0.00 3.00 9.82 0.99 0.62 3.50 1.92 23 I4_SR1 SilentIntronRegion 0 2.98 0.57 9.42 4.00 5.27 23.55 2.23 2.41 3.28 3.69 0.00 0.33 0.36 0.00 0.38 0.00 0.00 3.01 9.85 1.00 0.62 3.52 1.93 24 E5_Aa NovelBoundary 0 6.30 3.29 22.77 6.86 16.72 24.13 0.00 9.82 6.77 4.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.13 8.19 3.26 2.53 3.12 0.00 25 ER5a ExonRegion 0 18.50 3.47 78.70 13.36 8.44 45.26 6.11 16.78 17.27 17.25 0.00 0.02 0.00 0.25 0.34 0.25 0.55 5.10 19.13 5.66 3.85 5.06 3.85 26 E5a_E6a KnownJunction 0 15.63 7.76 112.06 15.58 3.40 65.59 7.95 17.21 20.80 23.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.89 25.32 3.26 0.00 6.25 0.00 27 E6_Aa NovelBoundary 0 6.45 6.12 10.05 2.03 3.90 31.00 4.37 4.31 6.89 7.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 17.32 9.46 2.41 3.12 0.00 28 ER6a ExonRegion 0 27.86 9.12 119.75 21.18 13.95 73.23 3.65 25.06 28.37 24.80 0.00 1.43 0.00 0.58 1.25 0.00 1.43 5.21 23.11 7.18 4.87 11.46 7.62 29 E6_Da NovelBoundary 0 3.78 0.00 3.67 8.82 3.90 2.44 4.24 6.16 5.76 3.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.87 12.80 5.75 12.11 0.00 0.00 30 E6a_E7a KnownJunction 0 14.15 3.35 119.42 16.15 29.46 51.62 1.90 8.50 13.40 30.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.46 6.52 0.00 8.21 0.00 31 E6a_E8a KnownJunction 0 10.82 3.29 15.85 0.00 4.33 34.70 2.25 6.49 6.77 3.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 2.82 0.00 32 I6 Intron 0 2.38 0.76 4.11 1.52 1.00 5.50 1.49 2.90 0.69 2.56 0.72 1.34 0.00 0.00 1.09 1.11 0.00 1.73 16.72 6.38 3.31 1.56 1.10 33 I6_SR1 SilentIntronRegion 0 2.42 0.77 4.16 1.55 1.02 5.58 1.51 2.94 0.70 2.60 0.74 1.36 0.00 0.00 1.10 1.13 0.00 1.75 16.97 6.48 3.35 1.59 1.12 34 ER7a ExonRegion 0 20.19 2.94 128.95 23.56 24.06 56.75 6.10 27.55 24.22 25.71 0.00 0.00 0.00 0.54 0.00 0.00 0.00 8.87 37.21 5.30 3.66 6.68 3.57 35 E7_Da NovelBoundary 0 3.41 3.35 13.63 3.03 0.00 9.82 6.27 2.42 6.60 4.38 0.00 0.00 0.00 2.12 0.00 0.00 0.00 6.01 33.32 2.49 2.84 6.06 0.00 36 E7a_E8a KnownJunction 0 30.97 0.00 142.66 28.70 19.19 91.20 4.28 24.93 26.13 21.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.66 25.79 0.00 0.00 5.14 0.00 37 E8_Aa NovelBoundary 0 0.00 3.35 9.17 2.06 0.00 27.88 0.00 4.89 3.36 5.94 0.00 0.00 0.00 2.88 0.00 0.00 0.00 11.52 8.85 11.25 5.81 6.00 3.76 38 ER8a ExonRegion 0 42.64 7.23 139.81 18.50 17.67 83.32 4.77 22.71 35.37 27.73 0.00 0.00 0.00 0.68 0.00 0.00 0.00 10.19 26.49 7.67 8.55 10.62 0.64 39 E8_Da NovelBoundary 0 3.26 5.53 42.78 3.33 0.00 28.85 2.03 9.82 8.19 10.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.01 21.65 3.20 2.97 3.00 0.00 40 E8a_E9a KnownJunction 0 60.68 3.35 155.52 17.05 15.96 68.94 2.16 30.89 29.57 29.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.51 17.41 9.01 0.00 9.06 4.35 41 I8 Intron 0 4.13 2.48 16.04 4.96 4.57 17.00 4.85 5.66 5.39 5.42 0.00 0.00 0.00 0.72 0.00 0.00 0.00 6.72 8.55 4.67 5.38 3.56 2.15 42 I8_SR1 SilentIntronRegion 0 4.17 2.51 16.20 5.00 4.61 17.17 4.89 5.71 5.44 5.47 0.00 0.00 0.00 0.73 0.00 0.00 0.00 6.78 8.63 4.71 5.43 3.59 2.17 43 E9_Aa NovelBoundary 0 13.34 6.12 25.63 0.00 11.46 27.09 0.00 15.61 9.20 9.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 11.11 0.00 0.00 2.94 0.00 44 ER9a ExonRegion 0 59.26 5.44 160.93 24.65 25.79 96.70 3.11 39.46 32.14 29.42 0.00 0.00 0.00 0.61 0.00 0.00 1.52 4.66 40.61 11.35 4.13 10.25 6.19 45 E9_Da NovelBoundary 0 20.45 6.18 14.90 7.69 0.00 40.77 7.73 9.53 13.05 6.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.32 8.85 5.94 2.35 6.12 3.33 46 E9a_E10a KnownJunction 0 50.16 2.89 116.17 10.62 20.88 97.44 4.11 22.06 17.27 25.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 30.97 2.81 0.00 5.76 8.71 47 I9 Intron 0 8.80 1.88 12.94 4.38 4.12 17.24 2.86 3.57 7.37 3.42 0.00 0.55 0.00 0.62 1.26 0.46 0.00 6.08 5.40 5.25 4.41 3.85 0.90 48 I9_SR1 SilentIntronRegion 0 4.11 0.99 2.66 0.99 3.90 22.27 2.57 0.00 0.89 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.55 4.13 4.28 4.05 0.00 49 I9_AR1 ActiveIntronRegion 0 11.08 2.32 17.88 6.01 4.26 15.03 3.01 5.28 10.48 4.28 0.00 0.81 0.00 0.91 1.87 0.68 0.00 8.99 7.25 5.81 4.51 3.79 1.34 50 E10_Aa NovelBoundary 0 13.41 3.35 42.75 7.42 15.11 30.95 25.08 15.40 20.78 10.13 0.00 0.00 0.00 0.00 0.00 4.19 0.00 24.33 8.85 27.74 3.03 0.00 3.93 51 ER10a ExonRegion 0 37.32 3.13 132.50 14.53 14.86 85.67 8.71 18.41 16.55 24.29 0.00 0.00 0.00 0.52 0.80 1.17 0.00 14.57 26.51 10.03 5.22 6.73 5.74 52 E10_Da NovelBoundary 0 0.00 0.00 6.06 0.00 0.00 0.00 0.00 10.56 9.11 7.06 2.16 0.00 0.00 2.47 0.00 7.01 0.00 20.15 3.48 8.82 8.53 5.94 3.24 53 E10a_E11a KnownJunction 0 40.53 0.00 179.03 23.64 12.82 61.95 5.70 40.38 17.71 19.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.44 22.40 12.27 0.00 5.39 0.00 54 I10 Intron 0 0.00 0.00 0.91 0.00 1.34 1.83 0.66 0.00 2.76 0.85 0.97 0.00 1.93 0.67 1.02 0.00 0.00 1.38 3.19 7.45 7.71 1.04 1.47 55 I10_AR1 ActiveIntronRegion 0 0.00 0.00 0.93 0.00 1.36 1.87 0.68 0.00 2.79 0.87 0.99 0.00 1.97 0.68 1.04 0.00 0.00 1.40 3.25 7.60 7.87 1.06 1.50 56 E11_Aa NovelBoundary 0 7.56 0.00 8.28 0.00 4.33 11.02 2.25 3.49 5.27 5.43 0.00 0.00 0.00 0.00 0.00 4.36 0.00 10.57 12.33 2.56 13.71 0.00 11.10 57 ER11a ExonRegion 0 28.58 5.32 128.00 12.99 8.48 58.68 3.85 29.61 23.91 17.99 0.80 0.00 0.00 0.55 2.55 1.23 0.00 11.94 15.23 14.67 7.49 6.86 5.61 58 E11_Da NovelBoundary 0 14.30 0.00 24.19 1.50 0.00 7.67 4.11 1.85 7.87 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.57 0.00 9.14 13.65 0.00 8.71 59 E11a_E12a KnownJunction 0 29.19 12.17 115.13 11.82 7.89 39.35 8.57 32.33 10.45 17.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.40 9.41 8.37 0.00 3.06 7.43 60 I11 Intron 0 4.15 3.99 1.19 0.00 1.75 1.20 0.87 0.00 1.20 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 12.50 4.17 8.65 0.00 5.76 61 I11_AR1 ActiveIntronRegion 0 4.26 4.09 1.21 0.00 1.80 1.23 0.89 0.00 1.22 0.00 0.00 0.00 2.59 0.00 0.00 0.00 0.00 0.00 12.83 4.28 8.87 0.00 5.91 62 ER12a ExonRegion 0 26.66 2.97 128.99 10.47 10.65 57.19 11.02 26.64 19.67 18.36 0.00 0.00 1.26 1.28 1.23 2.91 0.00 17.08 17.91 8.33 8.07 5.54 6.65 63 E12_Da KnownBoundary 0 22.60 0.00 74.18 12.29 4.33 70.41 6.49 18.73 19.68 10.61 0.00 0.00 0.00 0.00 6.30 0.00 0.00 23.92 21.65 9.46 8.90 2.88 0.00 64 E12a_E12b KnownJunction 0 6.96 0.00 75.93 2.86 7.56 7.89 3.80 20.45 6.34 5.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 2.43 0.00 0.00 4.35 65 ER12b ExonRegion 0 13.73 2.25 73.14 9.87 5.41 47.30 4.84 24.14 19.09 16.75 0.00 0.00 1.94 2.21 1.45 0.90 0.00 16.85 21.57 11.77 10.97 8.18 2.78 66 E12_Ab KnownBoundary 0 17.26 0.00 87.61 16.25 11.12 58.38 5.39 27.03 21.38 20.33 0.00 0.00 0.00 0.00 4.45 4.36 0.00 43.15 22.97 8.44 11.61 11.51 4.10 67 ER12c ExonRegion 0 21.35 1.43 87.96 8.52 7.85 36.22 5.72 25.33 22.62 12.96 0.00 0.00 0.15 0.60 2.29 3.00 0.00 21.44 19.50 10.55 7.77 6.07 8.19 68 E12_Db NovelBoundary 0 0.00 0.00 12.92 1.80 4.33 40.77 3.71 6.53 15.34 4.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.93 8.94 11.57 16.74 0.00 4.10 69 E12b_E13a KnownJunction 0 7.19 3.03 63.19 10.42 7.47 8.29 1.81 21.69 13.86 15.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.81 0.00 3.26 0.00 8.63 0.00 70 E13_Aa NovelBoundary 0 0.00 0.00 27.67 3.76 0.00 18.23 0.00 11.99 8.45 6.21 0.00 0.00 0.00 0.00 0.00 4.10 0.00 22.72 8.38 3.07 8.59 6.25 0.00 71 ER13a ExonRegion 0 10.48 0.89 40.87 7.91 3.85 11.44 2.19 10.44 8.89 13.45 0.88 0.00 0.00 0.00 0.70 1.01 0.00 7.86 14.50 6.98 3.36 4.04 4.97 72 E13_Da KnownBoundary 0 18.67 0.00 18.60 0.00 7.98 2.61 4.02 6.37 10.56 7.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.60 8.28 0.00 8.03 0.00 0.00 73 E13a_E13b KnownJunction 0 0.00 0.00 14.01 0.00 0.00 0.00 0.00 2.55 5.15 7.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.64 0.00 0.00 0.00 0.00 0.00 74 E13_Ab KnownBoundary 0 2.89 0.00 13.01 0.00 4.07 0.00 2.16 3.86 8.94 2.55 2.63 0.00 0.00 0.00 0.00 0.00 0.00 6.47 0.00 0.00 2.53 0.00 0.00 75 ER13b ExonRegion 0 14.82 0.00 30.63 0.82 8.03 1.83 3.97 8.64 12.35 11.47 1.93 0.00 0.00 0.00 0.00 0.00 0.00 7.39 9.56 0.00 6.61 2.08 0.00 76 ER13c ExonRegion 0 25.47 0.00 17.26 0.00 2.63 14.05 1.25 5.83 9.37 7.78 1.00 0.00 0.00 0.00 0.00 0.00 0.00 4.69 15.41 3.50 4.17 0.67 0.00 77 ER13d ExonRegion 0 18.48 0.00 4.82 0.00 0.00 11.13 0.00 0.69 2.47 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 9.77 1.42 0.88 0.00 0.00 78 IG35 Intergenic 0 1.08 0.00 22.46 2.60 2.74 3.05 1.87 5.61 3.54 7.45 0.25 0.00 0.00 0.64 0.79 0.38 0.42 10.35 13.47 6.82 6.78 0.53 1.88 79 IG35_AR1 ActiveIntergenicRegion 0 1.09 0.00 22.58 2.62 2.76 3.07 1.88 5.64 3.56 7.48 0.25 0.00 0.00 0.64 0.79 0.38 0.43 10.41 13.54 6.85 6.81 0.54 1.89