Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CES8 Gene 0 22.86 7.36 36.90 18.65 19.10 45.44 15.33 54.29 65.21 23.72 3.04 0.75 5.28 7.91 8.39 10.64 7.92 10.07 10.08 24.51 22.79 11.72 18.77 2 398354 Transcript 0 4.54 0.36 3.14 0.96 0.80 5.57 1.49 1.71 3.10 1.37 0.58 0.00 0.58 0.06 0.00 0.83 0.12 0.32 0.00 0.90 0.00 0.40 1.65 3 326686 Transcript 0 16.16 3.05 9.10 6.10 12.51 33.72 9.02 22.85 29.44 12.80 2.41 0.00 3.95 5.70 3.51 9.09 4.63 2.44 3.70 16.13 13.01 5.38 10.58 4 338718 Transcript 0 6.58 3.17 5.51 2.91 1.88 2.81 1.90 4.07 3.41 3.53 1.03 2.47 2.51 2.40 4.30 6.30 2.98 4.88 3.64 4.28 5.71 2.37 8.78 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2b ExonRegion 0 0.06 0.03 0.02 0.01 0.72 0.13 0.03 0.07 1.20 0.03 0.01 0.09 0.05 0.06 0.04 0.10 0.02 0.09 0.06 0.00 0.03 0.02 0.04 11 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E3_Aa NovelBoundary 0 105.72 36.11 33.88 90.00 15.96 30.10 69.07 47.69 46.99 43.22 19.53 18.31 6.33 6.65 10.26 41.19 46.66 49.95 35.67 76.32 20.45 10.29 33.80 14 ER3a ExonRegion 0 16.24 12.91 11.59 6.87 5.69 14.04 9.49 14.09 12.27 11.57 2.45 12.34 12.55 7.42 12.60 23.90 11.25 24.42 13.48 11.76 12.19 8.85 22.47 15 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E4_Aa NovelBoundary 0 0.00 18.09 18.39 3.93 0.00 7.61 3.84 8.17 12.38 14.10 0.00 0.00 6.66 0.00 0.00 3.59 0.00 6.72 0.00 12.02 5.50 0.00 4.27 17 ER4a ExonRegion 0 0.76 0.82 11.04 1.46 2.15 2.27 1.36 10.13 11.71 5.40 1.39 0.00 0.00 4.76 1.12 0.59 2.37 1.09 1.97 9.35 13.16 3.30 3.29 18 E4a_E5a KnownJunction 0 0.00 0.00 13.66 8.62 3.40 2.90 4.15 18.57 35.04 9.80 0.00 0.00 0.00 7.24 4.45 4.36 0.00 3.40 11.95 8.50 7.97 5.63 18.95 19 ER5a ExonRegion 0 2.59 1.61 15.68 5.13 14.96 20.13 4.46 15.17 12.64 10.86 0.00 0.00 1.47 4.24 4.59 9.49 2.56 7.02 4.23 9.32 9.79 4.10 7.74 20 E5_Da NovelBoundary 0 3.78 2.89 11.71 5.13 0.00 32.08 1.77 6.78 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 5.56 2.72 0.00 3.50 21 E5a_E6a KnownJunction 0 3.11 2.70 16.56 1.96 25.55 41.96 8.52 25.75 17.10 14.16 0.00 0.00 0.00 4.89 0.00 6.84 0.00 6.76 3.95 6.39 5.99 9.00 6.83 22 ER6a ExonRegion 0 7.52 1.64 18.21 11.73 11.31 26.67 8.11 36.93 34.57 18.22 2.82 0.00 0.67 4.63 7.10 6.75 6.24 7.58 4.03 18.54 15.97 3.96 7.27 23 E6a_E7a KnownJunction 0 14.22 3.29 27.02 16.81 11.71 24.76 14.88 73.32 62.64 33.50 7.11 0.00 6.82 0.00 13.35 23.93 4.11 11.81 8.19 21.35 17.98 2.94 15.37 24 ER7a ExonRegion 0 10.24 7.98 36.26 26.17 23.70 46.19 14.93 60.35 84.55 36.24 4.47 0.00 0.89 9.76 9.70 15.46 8.27 13.00 9.53 23.28 29.91 14.39 25.98 25 E7a_E8a KnownJunction 0 3.56 8.81 26.97 19.78 50.25 51.33 13.60 80.63 106.08 35.57 2.00 0.00 0.00 21.78 22.37 8.37 0.00 13.31 8.94 29.40 25.88 5.51 34.32 26 ER8a ExonRegion 0 11.45 5.50 41.02 16.95 26.15 35.87 14.65 77.45 93.00 32.77 2.26 0.00 1.88 10.22 13.93 12.85 11.10 13.60 6.61 41.60 32.07 14.09 26.57 27 E8_Da NovelBoundary 0 3.70 3.35 4.52 5.59 4.33 10.79 12.32 18.24 29.86 8.09 0.00 0.00 0.00 0.00 4.45 0.00 4.11 4.44 4.80 3.07 2.78 0.00 8.28 28 E8a_E9a KnownJunction 0 9.78 12.04 22.94 20.08 39.64 29.98 17.53 60.30 72.40 32.58 2.68 0.00 0.00 17.19 4.94 21.62 13.18 15.25 8.56 35.79 41.82 3.12 14.60 29 I8 Intron 0 2.80 0.67 5.44 4.71 1.77 10.93 5.26 3.41 14.63 0.57 0.00 0.00 1.28 1.42 3.50 0.98 3.28 2.74 10.55 4.93 5.11 3.45 8.75 30 I8_SR1 SilentIntronRegion 0 2.84 0.68 5.51 4.77 1.80 11.08 5.33 3.46 14.82 0.57 0.00 0.00 1.30 1.44 3.55 1.00 3.32 2.77 10.69 5.00 5.18 3.50 8.87 31 E9_Aa NovelBoundary 0 0.00 0.00 6.27 4.69 7.72 9.54 18.37 13.39 19.53 7.09 0.00 0.00 0.00 7.83 0.00 0.00 4.77 9.74 0.00 21.99 5.00 8.39 10.76 32 ER9a ExonRegion 0 5.75 9.44 28.62 17.02 24.77 48.67 18.64 73.44 76.42 33.94 7.04 0.00 0.00 12.29 6.25 19.13 15.32 10.19 11.43 26.30 29.83 21.26 17.09 33 E9_Da NovelBoundary 0 3.63 0.00 16.38 1.83 0.00 4.37 15.77 5.01 11.31 0.00 0.00 0.00 0.00 0.00 4.45 3.67 0.00 2.28 3.76 6.20 8.15 0.00 0.00 34 E9a_E10a KnownJunction 0 10.22 12.96 41.69 21.24 20.12 72.34 22.48 70.36 68.03 28.55 6.95 0.00 0.00 10.18 8.90 11.45 15.90 4.19 12.52 30.87 30.70 36.92 19.63 35 ER10a ExonRegion 0 10.09 4.89 37.80 19.57 17.00 59.42 15.40 59.34 76.73 26.67 3.47 0.00 1.83 16.11 9.40 14.12 11.82 10.22 8.36 40.17 31.79 15.35 35.61 36 E10_Da NovelBoundary 0 7.19 5.92 28.36 19.81 24.87 85.52 23.23 35.73 23.50 14.61 5.11 0.00 6.01 0.00 0.00 4.27 4.58 14.09 0.00 27.16 5.00 0.00 13.23 37 E10a_E11a KnownJunction 0 34.30 3.35 9.31 8.92 32.94 29.81 8.79 47.11 55.03 10.66 7.48 0.00 7.14 14.36 0.00 19.48 4.21 2.16 4.80 36.37 18.16 11.94 32.35 38 E10a_E12a KnownJunction 0 0.00 0.00 8.75 2.03 0.00 14.31 0.00 4.19 0.00 4.41 0.00 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 2.75 0.00 0.00 0.00 39 I10 Intron 0 5.79 6.16 29.62 12.30 10.98 32.61 14.62 24.41 23.38 13.53 0.76 0.35 1.78 3.79 1.72 3.48 1.94 8.62 3.42 12.26 12.91 2.85 7.75 40 I10_SR1 SilentIntronRegion 0 5.80 6.17 29.67 12.33 11.00 32.67 14.64 24.46 23.43 13.55 0.76 0.35 1.78 3.80 1.72 3.49 1.94 8.63 3.43 12.29 12.93 2.86 7.76 41 E11_Aa NovelBoundary 0 17.19 2.76 17.92 27.90 19.02 37.02 25.13 32.24 29.92 18.13 0.00 0.00 0.00 2.18 4.45 4.36 3.93 6.51 21.93 8.56 9.45 0.00 19.29 42 ER11a ExonRegion 0 14.27 4.52 7.49 2.36 13.91 31.76 5.46 30.51 30.53 14.64 2.74 0.00 7.06 7.96 13.83 10.75 12.71 7.66 8.81 15.76 19.37 10.96 16.28 43 E11_Da NovelBoundary 0 13.48 5.92 28.47 21.98 16.64 34.81 11.84 52.21 91.52 27.08 2.11 0.00 0.00 9.59 9.52 3.42 8.70 15.71 16.19 30.30 32.80 10.90 41.40 44 E11a_E12a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 2.03 8.46 1.79 6.63 2.68 0.00 0.00 4.83 4.45 3.59 4.68 1.87 0.00 6.52 5.81 0.00 3.24 45 I11 Intron 0 13.27 8.69 20.55 14.76 22.49 51.21 18.30 33.76 45.89 17.53 2.20 0.00 3.30 5.96 7.05 7.20 3.76 11.13 5.91 10.31 21.35 11.28 17.99 46 I11_AR1 ActiveIntronRegion 0 13.35 8.74 20.67 14.84 22.62 51.50 18.40 33.95 46.15 17.63 2.22 0.00 3.32 5.99 7.09 7.24 3.78 11.20 5.94 10.36 21.47 11.34 18.09 47 E12_Aa NovelBoundary 0 10.59 8.75 42.25 33.16 19.27 57.47 11.35 51.18 85.56 32.15 2.37 0.00 12.99 18.78 17.80 23.50 4.30 18.03 7.44 27.93 44.11 25.96 34.74 48 ER12a ExonRegion 0 17.95 9.98 27.83 18.96 19.30 49.51 17.78 45.20 60.97 25.04 2.45 0.00 1.28 6.56 15.22 13.80 11.96 10.79 5.03 24.09 28.68 16.60 23.89 49 E12_Da NovelBoundary 0 16.89 12.23 39.71 24.44 27.33 66.33 36.48 54.09 91.52 36.45 2.21 0.00 6.82 4.59 4.45 11.79 8.04 11.69 4.42 23.91 15.32 8.88 11.44 50 E12a_E13a KnownJunction 0 7.11 0.00 6.86 1.83 4.33 7.15 1.68 3.61 11.14 9.67 0.00 0.00 0.00 0.00 0.00 0.00 3.83 0.00 0.00 5.62 13.16 2.57 0.00 51 E12a_E14a KnownJunction 0 6.59 0.00 1.36 0.00 0.00 0.00 0.00 2.30 4.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 E12a_E15a KnownJunction 0 16.67 2.96 15.97 7.69 3.74 0.00 0.00 6.28 3.01 6.10 2.68 0.00 0.00 4.59 8.90 7.60 3.65 0.00 4.71 9.65 16.37 3.00 21.43 53 I12 Intron 0 9.42 7.42 7.92 5.33 14.05 37.45 9.67 14.40 20.99 5.46 1.54 0.41 2.75 4.17 2.34 2.03 3.77 3.67 4.72 12.38 5.78 4.04 11.73 54 I12_AR1 ActiveIntronRegion 0 4.47 10.43 14.33 9.19 12.94 44.28 14.37 24.10 35.55 8.77 1.17 1.08 2.36 6.49 0.88 3.59 4.98 6.93 6.73 12.84 5.32 4.40 9.75 55 I12_AR2 ActiveIntronRegion 0 12.45 5.64 4.05 3.00 14.81 33.41 6.84 8.55 12.21 3.47 1.79 0.00 3.01 2.79 3.25 1.10 3.05 1.70 3.53 12.17 6.09 3.85 13.02 56 E13_Aa NovelBoundary 0 26.97 13.81 55.23 52.41 41.94 87.17 37.67 93.81 112.38 32.77 10.58 5.70 0.00 9.65 18.79 15.98 0.00 25.70 39.62 28.83 20.20 15.61 19.29 57 ER13a ExonRegion 0 34.88 10.40 29.09 16.56 23.87 82.19 23.17 37.25 56.42 24.91 1.53 0.00 9.49 7.06 2.77 12.28 2.35 2.94 8.59 23.32 21.58 6.82 11.63 58 E13_Da NovelBoundary 0 34.97 15.26 51.80 44.62 29.12 75.30 18.81 55.66 69.70 19.74 0.00 0.00 0.00 4.77 0.00 3.76 0.00 38.97 8.28 42.38 21.50 11.02 34.57 59 E13a_E14a KnownJunction 0 6.37 0.00 0.00 6.96 0.00 51.39 12.98 10.15 21.70 10.29 0.00 0.00 0.00 0.00 0.00 8.46 0.00 0.00 0.00 9.20 0.00 0.00 0.00 60 I13 Intron 0 23.03 9.68 24.83 13.35 19.41 39.07 19.21 32.69 47.56 17.43 2.19 0.00 3.50 4.76 3.17 3.37 5.99 9.37 7.94 24.11 19.48 5.19 13.98 61 I13_AR1 ActiveIntronRegion 0 23.23 9.77 25.06 13.47 19.58 39.41 19.37 32.98 47.98 17.59 2.21 0.00 3.53 4.81 3.20 3.40 6.04 9.45 8.01 24.32 19.66 5.24 14.09 62 E14_Aa NovelBoundary 0 17.86 6.64 37.43 16.02 19.61 40.43 24.64 36.31 71.32 33.47 4.74 0.00 0.00 2.47 4.94 15.81 12.90 6.96 0.00 19.05 25.08 0.00 11.01 63 ER14a ExonRegion 0 36.04 0.00 19.22 8.59 10.56 46.70 6.55 45.08 56.36 15.81 4.00 0.00 4.95 7.23 1.75 4.32 6.92 3.09 6.41 17.49 17.00 7.28 16.61 64 E14_Da NovelBoundary 0 3.26 0.00 20.73 37.89 12.56 18.63 10.20 39.27 40.39 17.30 2.47 0.00 0.00 0.00 0.00 11.28 8.88 16.75 16.66 23.14 14.21 0.00 8.54 65 E14a_E15a KnownJunction 0 63.72 0.00 26.61 10.19 17.15 81.54 4.46 53.77 65.25 14.18 4.53 0.00 0.00 2.47 4.45 4.36 0.00 0.00 3.48 14.64 14.76 14.82 0.00 66 I14 Intron 0 6.80 5.75 14.54 8.61 8.94 10.37 9.35 12.57 15.84 6.81 0.99 0.00 3.47 1.90 1.05 2.29 5.09 5.43 5.32 10.93 9.62 0.80 3.40 67 I14_AR1 ActiveIntronRegion 0 5.50 6.24 23.27 14.39 11.37 10.39 11.57 18.85 26.94 12.10 1.37 0.00 3.65 2.86 1.45 4.21 6.24 6.29 6.02 15.07 16.64 0.49 4.85 68 I14_AR2 ActiveIntronRegion 0 16.98 10.46 8.37 3.49 12.27 21.02 13.66 10.33 5.27 0.98 1.11 0.00 2.21 0.77 1.14 0.00 7.57 8.95 9.13 12.19 2.53 2.39 3.37 69 E15_Aa NovelBoundary 0 36.97 5.72 30.51 37.16 30.14 51.28 25.61 71.18 67.74 26.22 0.00 5.70 0.00 2.47 4.45 8.12 4.77 8.21 13.55 12.34 11.98 0.00 15.54 70 ER15a ExonRegion 0 49.20 13.41 76.19 37.32 33.45 78.06 28.58 104.09 123.53 39.48 5.19 0.47 10.80 11.36 12.14 13.45 11.17 15.77 20.08 40.17 35.15 20.04 28.66 71 ER15b ExonRegion 0 7.02 1.07 8.06 2.87 2.39 16.70 4.46 2.82 4.49 4.10 1.73 0.00 1.73 0.17 0.00 2.50 0.35 0.97 0.00 2.69 0.00 1.21 4.95