Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HEATR3 Gene 0 67.84 51.99 53.06 30.66 78.17 58.11 57.56 49.30 45.32 27.24 114.79 98.80 83.06 89.64 75.66 97.37 73.16 35.62 40.22 47.69 31.30 48.90 49.41 2 285767 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 483299 Transcript 0 12.94 15.08 9.69 8.52 12.36 8.80 12.53 10.37 12.43 3.50 12.02 13.24 5.69 11.35 8.26 21.83 20.97 9.14 10.04 11.96 6.14 5.00 10.22 4 456734 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 401635 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 405152 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 299192 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 ER1a ExonRegion 0 0.00 0.00 0.49 0.00 0.00 0.00 1.59 0.00 1.24 0.00 0.77 0.00 0.00 1.30 2.32 0.00 5.94 0.00 0.00 0.43 0.00 0.00 0.00 9 ER1b ExonRegion 0 3.24 2.38 7.94 0.52 2.19 8.08 3.62 3.47 5.02 4.40 25.63 6.02 1.61 28.32 11.48 25.15 23.86 8.93 2.97 20.17 15.76 4.89 16.74 10 E1_Da NovelBoundary 0 7.04 0.00 4.52 0.00 0.00 2.67 0.00 0.00 5.93 1.48 6.69 0.00 0.00 17.07 4.45 32.47 4.77 10.94 4.14 11.38 0.00 0.00 20.32 11 E1a_E2a KnownJunction 0 3.56 9.80 4.29 1.93 0.00 0.00 4.02 5.79 5.82 1.64 15.32 0.00 0.00 20.01 18.54 48.88 41.14 33.41 9.13 11.76 5.19 0.00 7.26 12 E1a_E3a KnownJunction 0 0.00 2.70 0.00 1.90 9.93 0.00 0.00 5.09 2.58 3.22 0.00 0.00 0.00 3.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 5.45 0.00 13 E2_Aa NovelBoundary 0 3.78 3.35 6.42 1.60 4.24 28.56 4.06 4.31 4.86 3.44 14.06 0.00 0.00 26.13 5.32 8.12 4.58 19.07 3.95 9.46 5.62 0.00 7.60 14 ER2a ExonRegion 0 5.29 13.00 7.28 3.87 6.91 8.23 6.82 6.22 9.47 5.91 37.57 2.33 4.07 48.33 24.33 33.69 32.47 21.95 10.38 18.35 15.31 6.97 15.31 15 E2_Da NovelBoundary 0 10.96 0.00 3.64 1.73 0.00 2.16 0.00 0.00 5.03 1.56 10.11 5.70 0.00 0.00 4.45 12.13 4.68 15.75 9.22 2.36 5.56 0.00 8.71 16 E2a_E3a KnownJunction 1 24.60 9.41 4.70 1.43 4.16 10.39 14.09 9.00 17.77 12.44 36.64 5.70 6.82 87.94 8.90 52.81 25.71 46.10 8.28 17.13 35.71 13.96 33.63 17 E3_Aa NovelBoundary 0 3.78 12.30 7.39 6.53 10.10 2.33 17.62 4.23 8.88 5.45 2.05 6.00 6.82 9.54 5.44 13.07 17.95 1.82 0.00 18.66 0.00 2.69 4.35 18 ER3a ExonRegion 0 19.46 27.25 26.65 15.02 31.38 35.76 21.79 24.85 30.27 28.28 112.04 37.64 43.49 102.56 52.52 99.70 64.52 59.80 21.32 49.73 34.68 27.68 45.55 19 E3a_E4a KnownJunction 0 41.79 15.66 32.08 25.74 28.52 34.01 36.70 40.46 61.95 45.24 134.30 42.46 53.24 90.65 80.35 107.41 85.65 78.89 24.47 47.04 31.88 50.76 52.58 20 I3_AR1 ActiveIntronRegion 0 0.00 0.00 3.68 1.36 2.68 0.00 0.00 0.00 16.06 0.00 1.93 4.33 0.00 0.00 5.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E4_Aa NovelBoundary 0 7.19 3.22 8.34 5.86 3.23 28.68 8.57 11.71 7.44 1.61 0.00 6.30 6.82 0.00 4.45 8.03 13.09 0.00 3.48 6.46 0.00 0.00 7.26 22 ER4a ExonRegion 0 24.54 32.18 31.87 30.03 64.36 62.24 45.37 37.78 53.37 31.26 179.50 146.70 115.38 123.89 49.53 99.66 110.36 54.57 51.28 57.05 37.01 45.17 60.01 23 E4_Da NovelBoundary 0 11.34 3.35 4.46 5.49 3.74 2.90 7.60 1.77 17.19 1.10 2.68 12.60 0.00 0.00 4.45 11.36 17.20 10.94 0.00 15.40 0.00 5.82 0.00 24 E4a_E5a KnownJunction 0 21.63 38.22 41.75 41.59 37.86 55.88 45.75 46.37 44.36 32.77 230.74 136.24 140.25 172.11 72.93 143.38 110.80 44.11 74.64 81.43 46.77 41.09 60.69 25 E4a_E6a NovelJunction 0 3.26 2.50 7.33 1.43 15.45 8.52 10.86 4.39 26.68 2.47 12.32 6.45 0.00 6.95 0.00 0.00 3.83 6.38 0.00 6.07 2.59 8.33 22.37 26 E5_Aa NovelBoundary 0 20.45 0.00 3.61 11.49 4.33 5.17 1.72 4.23 15.71 2.74 7.84 24.76 19.32 4.65 6.18 4.36 9.54 2.57 0.00 14.83 0.00 17.45 3.33 27 ER5a ExonRegion 0 45.20 37.36 41.03 40.23 52.42 60.78 62.58 57.95 45.81 35.49 210.95 177.31 166.16 150.14 73.85 145.88 116.16 52.93 48.77 70.68 42.67 59.34 62.66 28 E5a_E6a KnownJunction 0 84.61 43.74 60.08 36.69 53.40 54.63 57.41 71.80 53.70 30.68 255.22 193.86 114.12 119.02 48.09 126.63 153.16 37.56 53.37 52.03 45.28 37.29 47.12 29 E6_Aa NovelBoundary 0 27.49 12.17 0.00 7.86 28.27 16.30 18.37 13.55 16.61 6.07 2.68 6.30 34.25 2.41 0.00 11.62 0.00 2.57 0.00 5.94 5.99 8.51 8.11 30 ER6a ExonRegion 0 76.58 72.65 65.96 44.99 90.88 94.11 95.51 74.38 67.69 37.44 241.01 234.22 199.48 160.64 73.09 141.84 123.61 59.13 61.20 80.43 66.72 67.97 53.88 31 E6a_E7a KnownJunction 0 67.27 72.88 76.14 49.48 156.11 97.95 136.29 85.89 81.60 37.31 260.49 233.03 123.53 216.73 90.98 164.66 110.43 51.49 75.67 74.72 58.69 73.66 114.98 32 E7_Aa NovelBoundary 0 3.78 0.00 20.19 1.86 8.40 0.00 5.70 0.00 7.99 1.18 0.00 5.40 15.10 2.47 0.00 8.72 4.77 4.64 0.00 3.20 0.00 0.00 0.00 33 ER7a ExonRegion 0 93.77 90.41 77.66 59.22 128.44 99.57 105.86 99.11 80.88 54.92 251.62 230.52 200.91 156.11 81.91 195.28 141.90 56.60 57.42 84.74 51.96 81.49 87.45 34 E7a_E8a KnownJunction 0 136.39 133.07 93.17 73.12 149.41 118.68 127.19 114.80 92.68 70.51 195.94 311.95 197.55 196.30 97.29 247.71 150.16 68.27 86.97 101.31 82.53 106.36 87.75 35 ER8a ExonRegion 0 95.20 94.15 72.61 67.92 110.97 94.85 105.01 85.97 87.06 53.92 193.76 276.23 193.01 180.88 106.29 217.75 167.69 88.73 85.83 93.17 69.91 72.33 96.36 36 E8_Da KnownBoundary 0 22.60 11.58 8.49 12.89 14.77 0.00 6.76 5.22 15.65 2.87 5.05 24.61 12.66 17.19 24.60 16.58 17.86 6.22 13.74 18.73 5.56 5.57 10.93 37 E8a_E8b KnownJunction 0 63.12 79.66 99.35 50.41 121.90 121.58 94.11 77.14 53.18 34.09 141.67 198.96 184.08 142.68 72.44 153.89 121.18 84.23 69.18 92.10 63.51 36.25 58.30 38 ER8b ExonRegion 1 13.71 11.31 4.63 8.37 9.27 6.30 8.88 13.34 11.92 2.52 10.21 26.40 18.23 14.02 6.09 33.70 14.64 13.14 8.17 4.79 5.49 6.40 20.56 39 E8_Db KnownBoundary 0 16.45 19.34 1.77 5.46 10.02 7.44 7.60 17.05 8.25 1.67 0.00 12.15 6.01 9.89 0.00 46.65 34.32 10.78 14.40 2.56 4.70 8.88 23.30 40 ER8c ExonRegion 0 20.99 20.51 7.66 7.42 19.40 13.30 19.79 16.42 16.09 3.57 18.68 19.72 8.73 19.62 12.81 37.15 38.24 14.32 14.60 14.07 11.39 8.10 15.99 41 E8_Ab KnownBoundary 0 35.34 30.32 9.88 7.56 46.35 23.00 36.04 9.16 27.55 4.67 35.96 18.46 12.66 27.55 23.98 16.58 36.00 11.40 8.66 22.56 20.26 3.00 14.43 42 ER8d ExonRegion 0 89.34 91.06 99.00 53.97 123.32 111.53 87.80 73.12 91.98 51.78 183.50 202.19 148.26 169.18 99.70 221.55 146.73 105.79 79.82 94.35 82.00 70.38 110.36 43 E8_Dc KnownBoundary 0 13.19 8.88 1.83 0.00 4.16 0.00 2.21 0.00 6.13 3.22 17.11 6.30 0.00 0.00 0.00 0.00 4.30 2.57 0.00 18.54 2.90 0.00 0.00 44 E8c_E8c KnownJunction 1 114.91 84.00 108.30 37.02 119.52 165.76 101.84 64.32 96.58 35.78 158.99 208.42 123.86 187.95 57.85 251.81 89.57 90.08 62.12 82.64 44.73 34.47 88.01 45 ER8e ExonRegion 0 4.89 9.66 11.73 9.61 5.31 4.30 5.28 4.33 8.76 3.44 5.36 6.76 2.65 3.08 3.72 6.50 3.70 3.95 5.48 9.86 0.89 1.90 4.46 46 E8_Ac KnownBoundary 0 0.00 12.10 6.92 13.09 16.21 2.56 14.09 7.93 6.19 4.94 7.58 0.00 6.17 0.00 0.00 3.67 20.48 7.67 0.00 8.37 2.59 3.06 10.41 47 ER8f ExonRegion 0 83.65 114.43 98.10 48.70 119.95 128.41 110.26 73.56 86.37 54.65 177.50 147.73 108.50 182.22 86.65 193.66 130.10 96.33 75.63 80.80 67.56 78.03 91.25 48 E8d_E9a KnownJunction 1 118.24 135.90 89.97 38.62 153.82 130.55 112.31 73.03 74.80 60.95 163.46 141.20 143.17 212.37 85.79 176.11 140.16 81.46 120.76 70.76 89.70 96.87 139.48 49 ER9a ExonRegion 0 62.21 78.91 64.77 27.98 75.45 48.70 51.44 49.27 64.55 35.91 157.26 107.10 77.03 136.47 85.58 140.86 109.46 63.47 47.92 56.25 71.47 51.84 62.36 50 E9a_E10a KnownJunction 0 91.05 125.64 89.91 37.39 106.62 57.13 68.94 64.86 67.33 47.65 137.93 52.82 79.86 198.19 93.58 168.08 100.05 77.64 46.59 62.89 95.14 69.62 66.24 51 ER10a ExonRegion 0 106.25 120.58 101.72 39.57 142.36 108.98 133.63 65.45 54.28 39.61 173.92 71.31 55.91 165.55 114.22 155.22 113.83 76.38 69.83 71.26 82.48 66.06 58.60 52 E10a_E11a KnownJunction 0 134.25 93.14 81.25 40.69 397.03 242.99 300.13 56.56 45.17 30.41 140.46 43.06 39.77 127.91 101.37 144.92 74.15 58.24 45.65 70.63 46.02 58.48 62.06 53 ER11a ExonRegion 0 176.07 97.50 104.51 55.43 235.35 118.71 114.05 85.27 64.06 38.95 165.28 113.17 144.25 159.21 136.28 168.36 92.20 64.17 50.26 66.40 55.72 68.68 72.27 54 E11a_E12a KnownJunction 0 25.93 118.27 109.61 48.35 110.27 204.71 157.48 126.34 91.29 49.96 247.85 151.55 132.30 140.62 147.10 148.17 118.65 66.53 49.22 64.88 71.29 93.20 62.66 55 I11_SR1 SilentIntronRegion 0 12.63 17.31 3.49 2.12 0.51 1.23 6.42 1.69 4.63 1.85 4.13 0.00 11.82 0.00 1.30 3.00 3.72 1.45 6.91 2.24 0.00 1.00 3.19 56 E12_Aa NovelBoundary 0 0.00 9.41 11.47 4.93 11.97 24.53 22.13 11.50 8.04 2.69 2.21 7.65 0.00 10.07 0.00 4.19 0.00 0.00 0.00 3.26 0.00 5.88 4.35 57 ER12a ExonRegion 0 51.75 89.74 132.72 66.20 238.20 168.05 133.08 115.93 93.16 52.09 187.53 134.12 153.58 152.18 130.15 173.64 114.38 44.35 80.05 54.96 48.71 105.87 78.31 58 E12a_E13a KnownJunction 0 46.08 59.13 102.45 34.59 303.48 94.09 101.49 93.07 109.11 54.83 220.06 132.19 194.47 140.33 82.08 88.78 165.12 18.12 26.35 35.86 24.40 57.56 49.60 59 ER13a ExonRegion 0 144.12 71.00 78.77 29.44 128.71 91.80 79.98 66.80 68.33 33.75 150.77 141.66 105.18 90.84 106.69 107.47 87.92 19.84 51.91 21.47 10.60 84.62 63.00 60 E13_Da KnownBoundary 0 15.26 41.24 56.21 21.41 140.58 39.18 55.82 36.84 39.15 11.77 115.82 162.80 79.05 78.40 148.84 78.44 58.53 10.86 31.53 14.96 11.61 65.64 21.68 61 E13a_E13b KnownJunction 0 0.00 0.00 28.06 8.86 28.44 19.25 23.49 19.51 21.53 8.33 29.32 33.16 6.17 30.84 45.37 38.28 21.32 6.30 7.15 7.22 7.04 29.88 16.22 62 ER13b ExonRegion 0 17.79 15.22 12.35 6.24 19.80 22.28 23.74 16.02 14.87 6.35 57.76 50.11 36.96 50.40 79.88 54.11 41.96 13.83 34.06 26.34 8.46 35.38 43.32 63 E13_Ab KnownBoundary 0 3543.15 3367.95 4607.58 4668.57 3028.78 2065.80 3943.07 4203.15 4102.59 3585.21 1267.27 948.31 1265.66 618.82 1185.49 3047.49 2463.95 4004.23 1842.78 3696.27 1762.94 1340.65 2932.31 64 ER13c ExonRegion 1 159.55 73.60 83.53 49.11 101.32 50.19 68.40 73.52 54.69 35.89 83.82 85.03 72.16 53.66 108.65 57.75 47.45 17.84 33.85 62.69 21.10 58.55 31.81 65 ER13d ExonRegion 0 19.75 6.10 2.04 1.36 0.00 0.00 0.88 2.30 0.82 0.00 0.64 5.77 0.00 1.08 0.97 0.00 0.00 1.85 0.00 4.96 0.00 2.08 2.94 66 IG3_SR1 SilentIntergenicRegion 0 7.08 8.87 5.55 6.69 4.72 16.76 2.32 3.38 9.55 2.47 3.29 4.06 0.00 0.74 6.35 0.74 1.75 2.69 3.28 5.05 0.00 0.20 1.65