Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LRRC29 Gene 0 5.50 3.58 10.15 5.57 4.38 3.80 3.54 6.04 9.16 6.77 2.28 1.83 2.52 5.24 8.24 11.83 5.70 18.01 15.51 13.57 14.17 4.28 11.68 2 485549 Transcript 0 0.44 0.47 0.33 1.48 0.00 0.63 0.47 0.65 0.00 0.17 0.00 0.00 1.07 0.00 0.00 0.80 0.00 0.89 1.41 2.62 0.87 1.04 1.35 3 462169 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 433915 Transcript 0 0.00 0.00 3.40 0.00 0.00 1.45 0.00 0.00 0.71 1.13 0.00 0.00 0.00 0.00 2.23 0.00 3.93 0.00 3.91 0.00 1.58 1.47 2.01 5 409509 Transcript 0 4.90 1.83 6.14 3.89 4.69 1.92 2.26 1.50 9.71 5.43 2.26 1.69 1.01 2.89 4.40 5.93 2.66 13.26 16.88 12.68 9.59 1.78 7.14 6 341546 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 424285 Transcript 0 6.75 1.63 0.12 0.00 1.29 0.78 4.95 1.52 0.00 1.30 0.00 0.00 0.00 2.57 0.99 9.50 0.00 2.85 7.67 7.82 8.27 0.00 22.38 8 393992 Transcript 0 1.30 0.66 0.47 0.00 7.51 1.72 6.02 0.17 1.24 2.07 0.00 0.00 0.00 1.62 1.50 6.52 3.30 3.34 4.42 0.96 4.48 0.00 7.10 9 447579 Transcript 0 2.32 1.24 2.57 1.15 2.79 1.92 1.57 1.31 2.46 3.12 0.29 1.35 0.17 1.87 0.71 3.24 1.25 7.24 3.02 4.41 3.81 0.95 4.24 10 409037 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.04 0.68 0.00 0.00 0.00 12 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.18 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1_Ad KnownBoundary 0 2.82 2.76 1.18 1.33 0.00 2.33 1.68 0.00 1.22 1.21 0.00 0.00 0.00 0.00 4.45 7.01 0.00 5.26 11.39 0.00 2.53 0.00 14.43 14 ER1b ExonRegion 0 0.60 1.74 1.05 0.00 0.00 1.83 0.47 0.00 1.59 1.56 0.00 0.00 0.00 0.00 1.04 1.70 0.00 2.64 12.06 2.13 1.26 0.00 3.99 15 ER1c ExonRegion 0 4.23 4.07 3.68 0.00 0.00 1.83 1.32 0.00 2.88 2.29 0.00 0.00 0.00 0.00 2.90 2.97 1.10 13.55 33.98 2.84 2.20 0.69 8.81 16 ER1d ExonRegion 0 5.82 6.44 3.68 2.73 4.91 2.90 1.32 1.30 6.79 2.29 0.00 0.00 0.00 0.00 2.90 12.14 6.33 21.87 59.73 4.26 4.22 2.08 14.19 17 E1_Da NovelBoundary 0 16.67 3.35 1.83 0.00 3.31 0.00 14.44 0.00 1.79 3.12 0.00 0.00 0.00 0.00 0.00 3.59 3.65 9.70 0.00 9.08 2.97 0.00 4.27 18 E1a_E4a KnownJunction 0 9.93 15.98 5.50 7.62 8.15 2.90 1.72 2.55 12.15 3.20 0.00 0.00 0.00 0.00 0.00 17.00 13.28 50.24 85.37 2.94 2.97 2.82 11.78 19 ER1e ExonRegion 0 6.35 12.02 3.68 4.09 5.35 2.87 1.32 1.73 7.41 2.29 0.00 0.00 0.00 0.00 2.02 14.86 6.60 24.02 57.34 3.52 4.41 2.08 14.68 20 ER2a ExonRegion 0 2.32 3.26 0.23 0.00 2.57 1.56 3.80 0.78 0.00 1.15 0.00 0.00 0.00 2.91 1.97 6.45 0.00 1.46 2.82 6.50 4.86 0.00 13.52 21 E2a_E4a KnownJunction 0 11.19 0.00 0.00 0.00 0.00 0.00 6.09 2.26 0.00 1.45 0.00 0.00 0.00 2.24 0.00 12.56 0.00 4.23 12.52 9.14 11.68 0.00 31.24 22 E3_Aa NovelBoundary 0 10.52 9.74 1.57 0.00 8.32 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 5.42 0.00 0.00 4.77 0.00 9.60 6.46 9.14 0.00 4.35 23 E3_Ab NovelBoundary 0 10.30 2.63 1.24 4.10 32.68 7.38 21.77 1.64 5.24 4.00 2.63 0.00 0.00 2.47 4.45 20.76 9.44 15.38 9.32 6.01 11.92 0.00 30.90 24 ER3a ExonRegion 0 1.30 0.66 0.47 0.00 7.51 1.72 6.02 0.17 1.24 2.07 0.00 0.00 0.00 1.62 1.50 6.52 3.30 3.34 4.42 0.96 4.48 0.00 7.10 25 ER3b ExonRegion 0 1.11 0.53 2.74 2.00 7.16 5.58 4.91 4.39 6.89 2.51 1.84 0.99 0.09 3.90 4.48 11.04 4.51 6.33 10.28 9.48 8.76 1.35 8.66 26 E3a_E4a KnownJunction 0 0.00 0.00 6.15 4.10 0.00 0.00 6.18 6.78 8.65 9.29 0.00 0.00 0.00 11.77 8.90 15.38 3.65 10.20 13.27 14.32 19.89 0.00 11.87 27 Ix_AR1 ActiveIntronRegion 0 0.91 18.30 0.00 0.00 5.35 0.00 2.65 5.19 2.47 0.00 0.00 0.00 0.00 1.62 2.90 0.00 0.00 3.70 0.00 0.00 6.61 0.00 0.00 28 ER4a ExonRegion 0 2.82 3.63 9.15 6.39 1.71 1.40 3.26 6.37 7.01 4.71 1.69 0.00 4.46 4.86 1.65 16.75 2.85 18.89 14.02 8.84 14.32 3.74 14.22 29 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E4a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E4a_E5d KnownJunction 0 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.65 0.00 0.00 0.00 3.15 0.00 4.01 32 E4a_E5e KnownJunction 0 0.00 0.00 7.10 2.06 4.33 0.00 0.00 0.00 3.50 2.98 2.47 0.00 6.17 2.47 0.00 16.83 0.00 9.08 3.58 0.00 6.30 2.82 4.35 33 Ix Intron 0 12.59 8.78 11.42 12.20 15.36 6.43 9.45 10.06 14.49 8.25 1.16 4.62 10.44 3.55 7.21 10.71 4.80 19.94 15.73 15.08 11.74 3.66 12.86 34 Ix_SR6 SilentIntronRegion 0 20.26 11.06 7.07 10.34 24.10 8.06 13.37 8.41 10.57 4.98 0.92 9.18 17.03 2.81 6.22 5.43 3.30 7.95 11.78 10.18 4.12 1.72 6.77 35 Ix_AR5 ActiveIntronRegion 0 7.59 9.88 15.12 13.20 15.70 10.46 8.20 9.62 13.48 6.68 0.00 5.89 8.18 2.93 8.87 11.11 5.38 20.14 16.44 16.16 14.70 1.29 13.75 36 Ix_SR5 SilentIntronRegion 0 6.28 2.10 0.31 3.81 2.81 3.76 3.07 1.85 3.24 0.02 1.24 0.00 9.46 2.37 4.87 5.89 4.14 6.80 4.59 2.56 4.44 2.65 17.52 37 Ix_AR4 ActiveIntronRegion 0 7.72 4.54 7.81 8.47 15.54 7.59 8.40 8.32 13.59 9.63 1.17 0.59 5.40 2.37 6.30 12.64 5.31 20.15 12.58 8.27 14.49 1.56 16.93 38 Ix_SR4 SilentIntronRegion 0 4.52 5.63 11.71 10.95 8.19 4.45 4.76 6.63 11.44 6.48 1.03 2.26 5.31 2.82 5.83 10.25 6.25 17.22 11.91 13.02 8.03 2.63 8.99 39 Ix_AR3 ActiveIntronRegion 0 5.03 3.65 8.51 6.82 6.17 3.97 4.85 9.85 11.82 5.18 1.97 1.46 0.00 4.80 4.53 10.37 3.75 18.20 15.58 12.36 11.20 2.75 9.93 40 Ix_SR3 SilentIntronRegion 0 14.98 11.46 14.79 15.07 17.81 6.98 10.92 13.61 16.67 12.11 1.68 2.73 7.41 4.37 8.61 12.11 4.31 24.83 19.31 17.87 14.30 6.40 17.27 41 Ix_AR2 ActiveIntronRegion 0 24.07 19.19 17.37 26.79 20.29 6.33 16.68 21.16 29.18 20.51 1.69 8.21 26.73 5.36 9.23 20.84 7.38 35.02 30.03 34.88 27.66 7.65 24.09 42 Ix_SR1 SilentIntronRegion 0 15.39 8.13 16.43 14.03 11.92 4.67 9.63 11.71 21.75 8.86 0.88 6.10 15.32 4.97 10.81 13.78 4.50 37.15 22.01 23.40 19.23 7.58 17.62 43 E5_Aa NovelBoundary 0 16.89 6.71 18.48 8.82 12.82 5.11 4.50 11.54 5.18 6.29 5.37 0.00 8.12 4.94 14.59 12.90 4.77 35.53 13.18 20.20 3.15 2.88 21.00 44 E5_Ab NovelBoundary 0 2.82 5.92 1.27 10.35 0.00 8.06 1.85 0.00 6.48 3.28 0.00 6.30 14.77 0.00 0.00 4.27 0.00 13.14 9.22 18.02 12.42 5.14 7.00 45 ER5a ExonRegion 0 1.32 1.40 1.00 4.43 0.00 1.15 1.41 1.94 0.00 0.50 0.00 0.00 3.22 0.00 0.00 2.41 0.00 2.66 1.19 7.18 2.62 3.13 4.04 46 ER5b ExonRegion 0 6.96 4.10 11.12 8.21 3.23 3.09 5.22 8.01 9.81 8.10 0.00 3.61 6.40 3.12 10.47 16.62 5.57 23.09 21.13 17.69 16.08 5.76 12.38 47 E5_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER5c ExonRegion 0 0.18 1.01 7.12 3.81 0.16 0.70 2.26 5.13 5.43 2.54 0.00 2.15 2.57 1.37 6.48 7.55 2.34 12.22 5.89 8.57 7.91 2.87 5.17 49 E5_Da KnownBoundary 0 0.00 0.00 3.22 10.02 0.00 5.56 4.37 13.31 9.98 1.67 0.00 0.00 0.00 0.00 10.75 4.19 0.00 28.85 4.61 8.95 0.00 0.00 6.66 50 ER5d ExonRegion 0 3.25 2.99 8.81 5.67 1.04 1.36 3.41 9.15 7.48 3.63 2.01 0.00 3.05 2.48 7.56 8.77 4.96 20.70 13.02 12.03 9.82 3.55 4.79 51 E5_Ad KnownBoundary 0 3.11 0.00 2.84 2.93 0.00 0.00 2.08 3.70 6.02 2.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.61 8.38 2.36 7.78 0.00 8.02 52 E5_Db KnownBoundary 0 0.00 3.03 3.55 1.80 0.00 0.00 0.00 0.00 1.74 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 8.94 3.07 0.00 0.00 0.00 53 E5_Ae KnownBoundary 0 0.00 3.16 5.09 7.09 0.00 2.56 0.00 5.75 16.61 4.86 2.68 0.00 0.00 2.47 10.63 0.00 4.21 13.10 4.80 5.69 15.01 8.33 3.76 54 ER5e ExonRegion 0 0.81 3.44 7.49 7.18 0.21 2.89 0.76 5.65 17.81 7.06 2.16 0.00 4.15 1.56 10.04 0.69 5.97 11.23 9.68 11.70 14.32 2.40 8.02 55 ER5f ExonRegion 0 6.22 4.88 14.32 8.06 2.38 7.02 3.46 5.51 12.33 10.82 3.15 2.48 2.05 6.64 12.09 17.39 6.54 24.84 23.02 13.60 22.22 9.64 15.83 56 E5_Dc NovelBoundary 0 0.00 17.83 11.80 3.56 7.81 0.00 0.00 8.26 10.45 5.64 2.58 0.00 0.00 0.00 20.40 12.99 4.02 15.34 11.95 25.38 19.52 2.69 4.35 57 E5c_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 2.32 0.00 0.00 0.00 0.00 0.00 58 E5c_E6b KnownJunction 0 14.89 13.29 3.64 10.06 3.74 5.34 1.68 4.76 1.19 4.59 0.00 12.15 0.00 2.35 0.00 24.35 9.54 17.33 32.19 2.81 5.87 2.51 11.52 59 E5c_E7a KnownJunction 0 0.00 0.00 5.59 0.00 0.00 2.90 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 4.45 0.00 4.21 0.00 7.81 0.00 0.00 2.94 0.00 60 I5 Intron 0 7.75 4.88 7.28 6.20 6.21 3.81 4.04 7.97 13.26 9.60 0.79 3.22 3.84 2.01 4.18 5.20 2.28 16.52 11.28 13.68 13.18 2.12 11.12 61 I5_SR1 SilentIntronRegion 0 7.77 4.89 7.29 6.21 6.22 3.81 4.05 7.98 13.28 9.62 0.79 3.23 3.85 2.01 4.19 5.21 2.29 16.55 11.30 13.70 13.20 2.12 11.13 62 E6_Aa NovelBoundary 0 3.48 5.46 2.90 5.16 11.46 2.38 6.71 6.90 10.94 1.50 2.68 0.00 8.28 0.00 6.30 0.00 3.93 6.18 0.00 20.58 2.29 3.12 20.40 63 ER6a ExonRegion 0 4.63 2.47 5.13 2.29 5.58 3.85 3.13 2.61 4.93 6.24 0.58 2.70 0.34 1.39 1.42 6.48 2.50 12.15 6.03 8.82 7.63 1.89 8.48 64 E6_Ab KnownBoundary 0 3.56 0.00 11.86 2.03 29.54 7.72 3.44 3.37 10.13 6.37 0.00 0.00 6.82 2.35 4.45 12.56 0.00 19.69 4.33 11.95 7.48 0.00 6.83 65 ER6b ExonRegion 0 19.47 6.01 14.04 16.77 11.90 2.82 3.12 8.56 10.77 8.19 0.89 3.40 1.23 12.49 9.06 21.95 11.88 28.51 26.41 20.49 14.51 10.96 22.73 66 E6_Da KnownBoundary 0 16.89 5.99 15.26 15.68 3.40 2.50 1.81 4.44 7.64 9.94 2.32 0.00 0.00 25.72 13.35 20.42 17.11 45.85 22.31 21.73 8.46 7.65 40.21 67 ER6c ExonRegion 0 10.61 7.40 9.27 7.34 2.06 0.89 0.17 5.58 7.76 8.97 4.49 4.88 2.53 13.03 7.59 16.58 6.43 23.48 17.07 22.26 19.52 4.17 22.40 68 E6_Db NovelBoundary 0 0.00 2.43 6.00 3.33 0.00 0.00 3.80 2.05 10.97 3.63 0.00 0.00 0.00 3.00 0.00 3.76 3.74 17.24 0.00 15.98 2.97 0.00 11.35 69 E6b_E7a KnownJunction 0 27.86 5.85 7.81 9.29 0.00 0.00 0.00 4.23 13.83 9.48 4.79 0.00 0.00 14.24 11.25 11.71 4.30 28.69 24.28 15.98 19.46 0.00 19.46 70 I6 Intron 0 3.91 2.82 4.21 1.87 2.47 2.12 0.61 1.78 2.97 2.76 0.00 0.82 0.89 0.31 2.09 3.43 0.00 9.33 11.76 10.80 8.64 0.00 7.45 71 I6_SR1 SilentIntronRegion 0 3.94 2.84 4.25 1.89 2.49 2.14 0.62 1.80 3.00 2.79 0.00 0.83 0.90 0.31 2.11 3.46 0.00 9.42 11.85 10.90 8.71 0.00 7.52 72 E7_Aa NovelBoundary 0 0.00 0.00 8.25 3.63 3.40 0.00 7.07 6.08 8.04 3.68 0.00 0.00 0.00 0.00 5.69 7.86 0.00 18.65 17.41 16.87 11.18 0.00 12.21 73 ER7a ExonRegion 0 8.76 4.69 13.46 7.38 5.06 5.48 2.21 4.69 14.94 10.27 3.73 3.37 1.84 11.34 16.25 16.18 13.16 17.10 22.39 18.80 21.26 5.85 18.64 74 E7_Da NovelBoundary 0 6.22 0.00 23.59 4.43 0.00 0.00 0.00 0.00 11.28 15.69 0.00 0.00 0.00 2.30 4.33 3.33 10.94 10.40 18.26 13.23 9.64 2.27 10.50 75 E7b_E8a KnownJunction 0 6.96 2.63 23.77 3.96 0.00 8.18 0.00 5.38 24.74 12.76 2.32 0.00 0.00 14.24 18.17 12.22 13.09 25.87 33.88 13.93 16.74 15.00 12.12 76 ER7b ExonRegion 0 9.98 2.03 20.83 3.89 0.00 3.67 1.89 2.72 19.94 15.89 1.93 0.00 0.67 12.99 12.02 11.89 16.98 19.53 32.76 18.24 20.15 12.20 9.65 77 E8_Aa NovelBoundary 0 0.00 0.00 19.10 4.76 0.00 0.00 6.62 0.00 10.62 9.89 0.00 0.00 0.00 4.71 0.00 4.19 0.00 4.89 22.02 11.06 5.50 0.00 0.00 78 ER8a ExonRegion 0 9.19 7.00 17.37 6.78 9.98 7.52 4.07 9.23 21.02 11.88 5.23 1.44 3.13 11.28 19.57 22.27 13.73 24.50 16.74 18.91 26.72 5.79 14.71 79 E8_Da KnownBoundary 0 9.19 3.09 16.50 10.42 11.29 10.96 3.49 10.93 26.79 8.89 0.00 0.00 0.00 16.42 11.25 20.59 7.95 26.12 21.93 29.59 32.00 7.96 25.35 80 ER8b ExonRegion 0 8.12 1.49 21.38 4.92 8.03 9.77 3.35 9.07 17.19 15.31 4.34 0.88 3.25 7.59 16.16 18.80 3.64 38.58 36.99 31.22 28.65 6.25 19.12 81 E8_Db KnownBoundary 0 16.74 3.35 23.89 5.06 20.46 22.71 1.77 1.77 11.11 17.54 2.58 6.00 6.33 2.41 24.72 18.71 3.83 45.39 59.48 41.29 19.83 7.84 16.13 82 E8b_E8b KnownJunction 0 3.78 0.00 4.73 0.00 0.00 2.50 0.00 5.63 7.55 1.13 11.53 0.00 0.00 4.83 0.00 4.36 0.00 6.80 8.56 0.00 11.18 0.00 0.00 83 ER8c ExonRegion 0 9.80 3.66 12.28 7.79 9.38 3.84 4.53 3.00 19.41 10.85 4.52 3.37 2.02 5.78 8.80 11.86 5.32 26.53 33.76 25.35 19.18 3.55 14.28 84 E8_Ab KnownBoundary 0 2.82 2.89 9.02 4.93 7.98 0.00 1.94 2.26 14.64 7.25 0.00 0.00 6.66 7.48 4.45 7.78 3.74 12.15 7.15 22.82 8.34 2.27 0.00 85 ER8d ExonRegion 0 7.25 4.35 15.60 5.98 6.89 4.81 5.66 9.18 7.79 7.92 4.21 1.71 5.00 7.59 9.57 9.61 5.92 18.58 14.22 15.89 16.61 4.12 14.00 86 ER8e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87 IG38 Intergenic 0 8.85 6.02 8.31 7.65 11.58 4.98 6.70 5.42 8.96 5.52 1.13 2.55 5.64 1.68 9.73 9.52 4.04 18.92 16.21 13.11 9.43 1.58 9.77 88 IG38_SR2 SilentIntergenicRegion 0 8.93 6.15 8.47 7.81 11.78 5.05 6.85 5.48 9.13 5.56 1.16 2.61 5.77 1.70 9.88 9.59 4.08 19.18 16.48 13.32 9.55 1.61 9.98 89 IG38_AR1 ActiveIntergenicRegion 0 6.35 0.00 2.45 1.36 5.35 2.75 0.88 3.74 2.47 5.54 0.00 0.00 0.00 1.62 5.80 8.92 3.30 11.09 6.37 6.38 8.81 0.00 0.00