Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC6A2 Gene 0 0.76 16.96 9.34 56.47 39.24 23.66 74.57 82.48 205.10 141.38 0.04 0.35 0.51 0.22 0.31 0.00 0.11 170.71 33.58 191.18 0.26 0.92 0.38 2 487877 Transcript 0 0.14 0.32 0.00 0.35 1.04 0.25 1.44 0.90 0.58 0.44 0.17 1.37 2.00 0.85 1.22 0.00 0.43 0.80 0.21 1.56 0.00 0.00 0.50 3 379906 Transcript 0 0.00 0.00 1.94 1.27 2.00 3.35 2.92 6.05 1.75 3.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.30 3.95 6.93 0.00 0.52 0.00 4 219833 Transcript 0 1.89 7.10 0.00 0.10 18.33 16.33 24.52 4.57 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.87 1.43 30.23 0.00 0.00 0.00 5 414754 Transcript 0 0.00 0.33 1.12 3.73 0.06 0.12 5.20 5.04 10.70 11.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.06 7.37 40.73 0.00 0.00 0.00 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.84 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER2a ExonRegion 0 0.00 0.00 0.00 0.32 0.84 0.00 0.62 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 9 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E3_Aa NovelBoundary 0 28.89 28.02 29.30 48.11 21.65 22.20 48.89 70.44 42.53 46.79 2.53 18.76 6.66 5.18 6.30 4.19 8.23 47.22 25.69 36.94 5.50 24.68 34.57 11 ER3a ExonRegion 0 0.82 1.57 0.00 0.00 1.03 0.00 4.07 0.98 0.00 0.00 1.49 12.20 17.98 7.68 10.88 0.00 3.85 0.00 0.00 4.11 0.00 0.00 4.54 12 E3_Da NovelBoundary 0 196.41 189.97 391.06 590.47 181.24 95.34 268.02 496.22 465.53 451.28 45.59 21.61 43.67 9.48 64.03 167.31 109.77 482.39 91.01 161.52 87.60 34.47 103.80 13 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER4a ExonRegion 0 0.45 1.31 0.00 1.31 7.45 1.57 1.97 3.32 1.97 0.37 0.00 0.13 0.04 0.01 0.11 0.00 0.00 1.18 0.68 2.23 0.00 0.00 0.00 15 E4_Da NovelBoundary 0 3.48 5.85 5.50 12.72 7.81 5.22 7.95 13.84 13.19 8.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.40 12.99 5.88 0.00 0.00 0.00 16 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER5a ExonRegion 0 0.00 0.00 1.94 1.27 2.00 3.35 2.92 6.05 1.75 3.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.30 3.95 6.93 0.00 0.52 0.00 18 E5_Ab KnownBoundary 0 0.00 0.00 1.39 2.06 0.00 5.00 1.77 4.03 1.79 6.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.73 0.00 15.66 0.00 0.00 0.00 19 ER5b ExonRegion 0 0.33 2.50 4.84 16.61 4.63 10.41 24.25 41.06 121.23 94.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 150.93 16.79 168.90 0.00 0.33 0.00 20 E5a_E7a KnownJunction 0 0.00 2.63 6.39 15.18 4.33 15.50 18.90 65.72 127.52 118.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 98.00 23.44 161.01 0.00 0.00 0.00 21 ER6a ExonRegion 0 0.00 0.00 0.00 1.49 0.00 0.67 4.41 3.78 2.70 3.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 1.17 6.32 0.00 0.00 0.00 22 ER7a ExonRegion 0 0.00 4.08 5.79 25.74 7.97 3.96 30.39 82.10 253.97 171.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 265.43 47.68 278.85 0.00 0.81 0.00 23 E7a_E8b KnownJunction 0 0.00 0.00 11.71 37.66 3.74 0.00 35.77 91.14 294.59 212.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 296.43 64.00 366.44 0.00 0.00 0.00 24 ER8a ExonRegion 0 0.00 0.33 1.12 3.73 0.06 0.12 5.20 5.04 10.70 11.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.06 7.37 40.73 0.00 0.00 0.00 25 E8_Ab KnownBoundary 0 0.00 2.96 0.00 12.19 0.00 0.00 16.69 11.75 15.89 16.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.57 13.18 43.53 0.00 0.00 0.00 26 ER8b ExonRegion 0 0.91 10.08 7.96 36.04 12.58 15.58 55.55 82.94 260.98 190.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 214.82 39.92 320.94 0.29 0.54 0.00 27 E8a_E9a KnownJunction 0 0.00 8.62 9.91 34.33 55.60 5.62 48.40 54.38 188.13 148.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 251.95 38.87 234.45 3.15 2.51 0.00 28 I8 Intron 0 0.18 2.22 1.36 13.45 7.95 1.93 31.64 11.83 16.99 18.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.59 7.19 42.05 0.04 0.14 0.08 29 I8_SR1 SilentIntronRegion 0 0.00 1.57 1.41 10.64 6.18 1.41 20.20 4.76 9.07 11.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.68 5.40 32.45 0.00 0.32 0.00 30 I8_SR2 SilentIntronRegion 0 0.19 2.26 1.35 13.64 8.07 1.97 32.39 12.29 17.51 18.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.31 7.31 42.69 0.04 0.13 0.09 31 ER9a ExonRegion 0 0.00 13.30 7.21 33.10 32.71 11.16 56.30 55.98 188.85 123.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 170.14 31.58 232.16 1.13 1.33 0.00 32 E9_Da NovelBoundary 0 0.00 3.35 0.00 18.15 3.57 7.84 35.33 2.42 30.18 28.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.43 7.91 81.75 0.00 0.00 0.00 33 E9a_E10a KnownJunction 0 0.00 8.49 3.16 36.13 11.80 11.13 23.05 85.64 254.42 114.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 136.38 36.71 216.87 0.00 0.00 0.00 34 E9a_E11a NovelJunction 0 0.00 2.89 7.39 25.70 7.30 5.62 63.11 16.31 17.13 109.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78.51 35.95 47.11 0.00 0.00 0.00 35 I9 Intron 0 0.34 2.52 0.71 10.48 7.88 2.52 30.74 12.67 27.46 22.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.55 10.02 56.72 0.03 0.28 0.08 36 I9_SR1 SilentIntronRegion 0 0.34 2.52 0.71 10.48 7.89 2.52 30.76 12.68 27.47 22.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.56 10.03 56.75 0.03 0.28 0.08 37 E10_Aa NovelBoundary 0 0.00 12.56 1.33 18.71 7.56 0.00 32.11 26.45 34.75 29.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.04 20.80 66.28 0.00 0.00 0.00 38 ER10a ExonRegion 0 0.00 8.54 7.76 45.23 32.31 13.77 50.50 83.32 286.54 124.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 216.64 36.86 231.09 0.00 3.19 1.11 39 E10_Da NovelBoundary 0 0.00 3.35 2.99 26.44 12.48 11.41 28.44 14.99 20.31 30.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59.61 14.40 46.34 0.00 0.00 0.00 40 E10a_E11a KnownJunction 0 0.00 17.56 11.86 35.66 22.84 2.33 32.72 89.71 291.00 112.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 184.09 29.84 194.95 0.00 0.00 0.00 41 I10 Intron 0 0.68 3.92 2.12 15.97 9.34 2.80 31.50 13.33 20.90 27.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.96 7.67 35.60 0.18 0.00 0.00 42 I10_SR1 SilentIntronRegion 0 0.67 4.40 1.05 14.98 7.32 2.22 28.29 12.45 18.61 24.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.17 8.30 36.53 0.14 0.00 0.00 43 I10_SR2 SilentIntronRegion 0 0.70 3.12 4.01 17.82 12.91 3.82 37.32 14.97 25.02 33.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.74 6.64 34.30 0.24 0.00 0.00 44 E11_Aa NovelBoundary 0 0.00 6.71 4.20 28.83 11.88 8.63 48.23 12.82 32.55 26.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.36 0.00 31.13 0.00 0.00 0.00 45 ER11a ExonRegion 0 0.00 27.61 11.99 67.66 49.81 18.02 101.75 122.21 325.20 188.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 293.88 55.90 296.07 0.97 2.84 0.00 46 E11a_E12a KnownJunction 0 0.00 21.84 21.14 72.58 41.43 19.08 131.30 106.63 336.14 254.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 317.16 61.18 315.05 0.00 5.94 0.00 47 ER12a ExonRegion 0 0.86 18.97 15.04 75.37 41.74 40.33 103.79 117.66 326.93 214.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 325.87 45.28 319.86 0.71 2.55 0.00 48 E12a_E13a KnownJunction 0 0.00 27.82 6.48 89.97 42.28 41.51 67.61 144.54 351.53 220.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 313.59 13.27 327.51 2.90 2.88 0.00 49 E12a_E14a NovelJunction 0 0.00 3.35 0.00 15.38 4.33 2.84 17.40 11.75 9.81 26.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.22 0.00 51.58 0.00 0.00 0.00 50 I12 Intron 0 0.35 0.34 0.76 6.93 4.23 1.68 19.50 13.07 15.31 22.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.41 10.60 26.91 0.00 0.00 0.00 51 I12_SR1 SilentIntronRegion 0 0.35 0.34 0.76 6.95 4.24 1.68 19.56 13.11 15.36 22.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.55 10.64 26.99 0.00 0.00 0.00 52 E13_Aa NovelBoundary 0 0.00 0.00 3.67 5.76 6.96 5.79 18.90 18.89 23.81 26.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58.86 4.33 18.34 0.00 0.00 0.00 53 ER13a ExonRegion 0 1.91 23.40 8.34 101.03 30.66 27.83 91.26 146.25 385.21 232.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 311.47 40.79 360.51 0.31 3.02 0.00 54 E13_Da NovelBoundary 0 0.00 0.00 3.13 20.24 24.28 12.89 68.14 25.01 33.48 41.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 99.86 36.52 60.27 0.00 2.63 0.00 55 E13a_E14a KnownJunction 0 0.00 20.65 9.52 119.13 21.39 15.67 83.64 132.46 305.03 217.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 221.53 24.47 316.07 0.00 0.00 0.00 56 I13 Intron 0 0.60 3.28 2.16 10.78 7.99 4.26 33.51 15.02 21.82 33.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.22 4.67 31.47 0.10 0.10 0.00 57 I13_SR1 SilentIntronRegion 0 0.60 3.28 2.17 10.80 8.00 4.27 33.57 15.05 21.86 33.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.28 4.68 31.52 0.10 0.10 0.00 58 E14_Aa NovelBoundary 0 0.00 0.00 4.85 24.04 3.82 8.69 29.72 10.27 25.03 44.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.80 9.13 24.35 0.00 0.00 0.00 59 ER14a ExonRegion 0 0.84 16.49 16.99 103.44 46.44 54.81 105.22 143.65 358.06 232.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 365.50 60.77 355.76 0.34 2.99 0.00 60 E14a_E15a KnownJunction 0 0.00 15.79 26.94 151.80 63.75 70.53 143.79 188.53 421.15 275.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 502.41 88.94 426.71 5.07 9.25 0.00 61 ER15a ExonRegion 0 0.00 15.01 19.37 119.33 37.78 33.41 112.96 142.18 353.86 269.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 403.71 83.78 359.30 1.81 2.52 0.00 62 E15a_E16a KnownJunction 0 0.00 3.09 10.14 56.07 28.44 38.61 49.11 92.91 324.42 256.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 272.35 42.92 311.28 0.00 0.00 0.00 63 E15a_E17a NovelJunction 0 0.00 0.00 1.83 19.54 16.13 7.33 4.06 14.66 27.95 30.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.26 0.00 39.44 0.00 0.00 0.00 64 I15 Intron 0 0.16 2.77 0.55 7.07 6.07 1.53 23.84 14.62 18.11 11.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.95 3.13 20.29 0.00 0.00 0.00 65 I15_SR1 SilentIntronRegion 0 0.16 2.78 0.55 7.09 6.09 1.53 23.91 14.66 18.16 11.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.99 3.14 20.35 0.00 0.00 0.00 66 ER16a ExonRegion 0 0.00 13.61 10.32 72.19 30.41 23.89 75.49 109.25 294.52 237.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 305.57 66.42 273.52 1.11 2.06 1.48 67 E16a_E17a KnownJunction 0 0.00 18.15 15.05 119.17 60.36 39.64 117.91 128.73 367.53 255.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 442.02 95.81 324.57 0.00 0.00 0.00 68 I16 Intron 0 0.00 1.01 0.60 10.06 6.19 3.03 11.36 18.71 21.57 27.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.34 7.36 21.42 0.00 0.00 0.00 69 I16_SR1 SilentIntronRegion 0 0.00 1.01 0.61 10.13 6.23 3.05 11.44 18.83 21.71 27.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.43 7.41 21.56 0.00 0.00 0.00 70 E17_Aa NovelBoundary 0 0.00 3.16 7.07 20.08 0.00 2.84 27.29 21.11 43.40 32.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.64 0.00 42.44 0.00 0.00 0.00 71 ER17a ExonRegion 0 1.29 16.10 14.54 64.73 56.62 41.73 110.16 112.18 282.83 237.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 332.44 64.79 315.20 0.00 1.29 0.89 72 E17a_E18a KnownJunction 0 0.00 18.88 26.40 65.79 65.28 51.11 143.75 144.38 289.81 229.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 322.34 70.97 364.01 0.00 0.00 0.00 73 ER18a ExonRegion 0 0.00 16.86 16.15 51.56 43.59 23.94 104.91 107.74 260.06 208.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 264.25 50.43 320.03 0.00 0.00 0.00 74 E18a_E19a KnownJunction 0 0.00 5.72 8.63 31.13 53.48 9.54 73.71 77.22 262.09 210.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 191.60 16.94 295.49 0.00 0.00 0.00 75 E18a_E20a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 4.77 1.94 6.33 4.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 0.00 2.68 0.00 0.00 0.00 76 I18 Intron 0 0.28 2.14 3.60 14.96 5.63 0.72 21.58 13.20 9.68 16.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.77 8.37 24.33 0.00 0.00 0.00 77 I18_SR1 SilentIntronRegion 0 0.28 2.15 3.62 15.03 5.66 0.73 21.69 13.27 9.73 16.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.91 8.42 24.46 0.00 0.00 0.00 78 E19_Aa NovelBoundary 0 0.00 9.08 2.90 24.97 4.33 0.00 29.46 21.73 5.90 16.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.71 4.61 28.19 0.00 0.00 0.00 79 ER19a ExonRegion 0 1.47 37.55 16.67 110.51 86.32 45.16 145.73 142.24 320.22 220.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 211.95 49.33 247.44 0.31 0.87 0.51 80 E19_Da NovelBoundary 0 7.48 89.66 13.16 119.67 94.57 44.18 189.46 166.43 285.67 265.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 115.32 25.04 225.63 0.00 0.00 0.00 81 I19 Intron 0 6.88 46.10 18.69 150.25 150.34 60.10 199.73 174.59 333.60 229.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 160.27 41.43 223.68 0.00 0.73 0.26 82 I19_SR1 SilentIntronRegion 0 6.89 46.18 18.72 150.51 150.59 60.20 200.07 174.89 334.17 230.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 160.54 41.50 224.06 0.00 0.73 0.26 83 E20_Aa NovelBoundary 0 9.71 40.58 31.34 205.90 219.61 87.11 224.35 238.19 458.47 292.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 91.69 18.35 192.01 0.00 0.00 0.00 84 ER20a ExonRegion 0 3.79 14.20 0.00 0.19 36.66 27.89 47.11 2.82 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.95 2.85 57.78 0.00 0.00 0.00 85 IG36_SR1 SilentIntergenicRegion 0 15.29 41.06 28.78 163.42 203.38 79.18 248.58 202.61 299.00 199.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 96.56 41.61 189.86 0.00 2.28 0.00 86 IG36_AR1 ActiveIntergenicRegion 0 8.18 41.74 27.37 169.12 153.61 44.73 162.45 238.19 353.36 248.33 0.00 0.00 0.36 0.00 0.00 0.00 0.00 61.32 28.92 157.27 0.00 0.59 0.83 87 IG36_AR2 ActiveIntergenicRegion 0 2.12 0.00 0.00 0.00 0.00 1.83 2.65 0.00 0.00 0.00 1.93 10.87 0.00 2.30 32.59 8.92 3.30 7.39 3.19 8.51 0.00 18.75 2.94