Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC109460.1 Gene 0 29.05 14.48 2.77 3.79 13.95 7.64 18.95 6.48 3.43 4.16 6.55 15.93 24.29 11.11 20.63 32.00 18.77 6.42 13.00 14.39 8.23 5.88 16.82 2 499485 Transcript 0 6.92 3.17 0.82 0.83 3.67 2.17 4.57 1.42 0.96 0.91 1.47 4.20 6.22 3.47 5.81 8.12 4.23 1.70 2.91 4.15 1.82 1.28 4.41 3 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.22 3.71 4.42 0.00 5.14 0.00 0.47 0.00 0.36 0.00 0.00 0.00 0.00 4 E1_Da NovelBoundary 0 536.02 385.06 584.63 610.08 366.04 314.02 568.86 546.08 525.31 498.93 122.50 145.55 251.77 109.13 130.17 336.75 244.88 610.11 242.45 494.14 300.18 170.78 306.37 5 E1a_E2a KnownJunction 0 2.74 0.00 1.09 0.00 3.14 2.16 2.16 0.00 1.07 0.00 0.00 0.00 0.00 4.24 0.00 3.16 0.00 0.00 0.00 4.73 0.00 0.00 3.59 6 Ix Intron 0 2.52 1.45 5.22 2.42 5.74 2.62 0.63 1.84 2.19 4.07 4.61 0.85 2.96 9.88 11.10 8.50 7.87 4.82 0.76 1.01 2.63 1.99 2.10 7 Ix_SR1 SilentIntronRegion 0 2.55 1.47 5.27 2.44 5.79 2.65 0.64 1.86 2.21 4.11 4.65 0.86 2.99 9.97 11.21 8.58 7.94 4.86 0.77 1.02 2.65 2.00 2.12 8 Ix_SR1 SilentIntronRegion 0 14.72 2.39 1.74 0.90 14.20 4.97 0.89 2.33 2.93 1.30 8.74 15.74 11.00 25.17 21.37 18.72 13.67 2.14 6.22 0.00 2.10 3.80 9.66 9 Ix_AR2 ActiveIntronRegion 0 75.14 11.95 0.00 0.14 22.35 6.46 5.05 0.29 1.29 0.74 9.26 18.49 24.13 30.28 26.90 71.95 8.11 0.12 6.44 0.00 2.34 9.25 25.27 10 Ix Intron 0 14.35 3.16 4.67 3.84 8.62 2.24 1.91 3.43 2.05 2.66 10.09 5.23 11.74 18.94 23.85 28.73 15.04 5.21 2.12 1.42 5.63 3.70 9.79 11 Ix_SR1 SilentIntronRegion 0 14.41 3.18 4.69 3.85 8.66 2.25 1.92 3.45 2.05 2.67 10.14 5.26 11.79 19.02 23.95 28.84 15.10 5.23 2.13 1.42 5.66 3.72 9.83 12 Ix Intron 0 12.51 0.00 0.75 1.68 9.56 1.76 0.91 1.77 1.77 0.70 2.66 5.60 11.15 6.80 13.79 18.39 6.81 1.77 1.75 0.88 2.12 1.15 6.06 13 Ix_SR1 SilentIntronRegion 0 12.58 0.00 0.76 1.68 9.62 1.77 0.91 1.78 1.78 0.71 2.67 5.63 11.21 6.84 13.87 18.49 6.84 1.78 1.76 0.88 2.13 1.15 6.09 14 Ix Intron 0 16.51 0.00 0.00 0.00 1.61 3.30 0.79 0.00 0.00 1.03 0.00 0.00 2.32 5.62 9.11 19.62 13.86 1.11 1.91 0.00 0.00 2.50 0.00 15 Ix_SR1 SilentIntronRegion 0 18.84 0.00 0.00 0.00 1.61 2.57 0.77 0.00 0.00 1.05 0.00 0.00 3.28 6.55 9.77 21.45 15.02 1.26 2.02 0.00 0.00 2.81 0.00 16 Ix Intron 0 27.68 1.59 4.09 2.12 17.42 2.10 4.21 5.64 4.22 1.25 15.21 13.00 36.27 42.67 51.74 53.41 29.92 5.99 5.48 3.88 8.38 7.81 14.69 17 Ix_SR1 SilentIntronRegion 0 35.00 0.97 2.19 2.43 14.09 1.76 1.27 3.70 3.97 1.23 12.50 20.41 14.33 31.74 58.37 54.06 21.36 4.84 4.58 5.09 9.51 8.48 12.66 18 Ix_SR2 SilentIntronRegion 0 35.30 2.42 4.71 1.39 33.10 3.05 6.04 5.12 3.56 1.19 15.04 19.73 68.04 46.66 55.25 44.62 35.77 3.11 6.85 3.37 8.87 3.14 16.33 19 Ix_AR2 ActiveIntronRegion 0 57.91 2.98 7.89 2.27 18.84 3.55 9.57 3.94 3.16 1.84 18.22 20.72 87.05 44.35 65.80 73.59 33.41 2.76 3.14 3.23 15.37 15.03 17.46 20 Ix_AR3 ActiveIntronRegion 0 13.18 1.04 4.98 3.12 10.50 2.05 5.10 10.54 7.22 1.75 22.86 2.97 23.50 56.87 55.52 72.79 40.16 12.86 7.06 5.25 8.14 10.90 18.71 21 E2_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 8.32 0.00 2.08 0.00 0.00 3.01 0.00 0.00 0.00 0.00 9.64 12.30 13.00 0.00 8.56 0.00 2.66 0.00 8.37 22 ER2a ExonRegion 0 31.72 15.80 3.03 4.14 15.23 8.33 20.70 7.08 3.75 4.54 7.14 17.27 26.37 12.06 22.26 34.78 20.47 6.92 14.19 15.70 8.98 6.42 18.36 23 E2_Da NovelBoundary 0 1006.33 477.35 232.69 273.26 422.50 335.26 604.15 314.01 309.00 217.45 217.95 188.61 284.56 120.49 233.76 598.56 385.97 459.43 571.88 590.08 318.65 236.97 500.23 24 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER3a ExonRegion 0 0.13 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 1.07 1.63 2.65 0.21 1.56 0.00 0.30 0.14 0.00 0.09