Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF688 Gene 0 37.09 18.04 43.63 19.99 36.96 30.57 16.90 72.75 59.91 81.11 21.14 5.12 10.17 31.94 48.99 31.45 29.20 50.74 39.54 30.05 30.33 33.44 34.28 2 223459 Transcript 0 18.75 14.90 30.14 16.45 29.71 27.13 14.26 52.63 42.27 60.38 11.91 10.98 10.92 16.11 30.78 18.52 14.74 50.92 29.48 27.27 17.32 22.07 31.62 3 395219 Transcript 0 30.91 8.47 8.25 5.12 15.07 7.45 3.15 14.83 10.62 17.57 3.79 2.34 3.19 10.85 21.49 21.65 15.06 7.99 21.49 5.29 5.69 12.19 7.38 4 ER1a ExonRegion 0 26.75 19.21 36.51 21.58 45.81 32.21 21.78 63.70 53.02 77.83 5.89 5.79 4.00 12.71 14.22 12.21 12.41 48.08 30.47 21.39 19.20 26.81 36.41 5 E1_Ab KnownBoundary 0 3.70 8.95 18.33 12.25 22.33 11.13 4.28 58.16 29.05 28.82 5.05 0.00 0.00 2.30 4.45 0.00 12.16 12.52 9.51 20.45 5.75 19.90 19.72 6 ER1b ExonRegion 0 13.61 13.69 35.54 13.27 28.35 25.61 20.63 58.59 57.26 68.00 6.49 1.91 4.44 10.78 12.15 14.70 13.17 36.30 21.68 23.08 20.38 22.57 25.72 7 E1_Da KnownBoundary 0 31.56 8.88 33.20 18.51 51.61 24.64 13.87 102.89 68.63 88.75 12.27 0.00 0.00 16.83 14.34 17.17 8.60 49.50 17.98 29.47 20.63 8.08 23.56 8 E1a_E2a KnownJunction 0 3.41 3.35 4.88 2.06 7.98 0.00 0.00 8.71 4.05 13.81 0.00 0.00 0.00 0.00 4.45 11.79 4.77 3.86 12.52 3.26 0.00 3.12 3.84 9 ER1c ExonRegion 0 23.43 13.44 31.29 14.34 31.86 22.20 14.38 62.08 50.95 68.67 14.63 2.38 4.07 18.49 27.06 19.50 18.25 39.39 29.64 23.29 21.27 27.65 26.08 10 E1_Db NovelBoundary 0 2.96 8.81 14.61 10.49 15.37 23.57 15.55 30.31 28.24 44.67 22.11 5.85 6.82 21.60 18.30 10.08 8.23 31.67 9.13 8.95 21.93 8.51 15.37 11 E1b_E2a KnownJunction 0 6.08 12.04 22.62 13.42 11.46 26.97 6.62 32.12 22.83 34.65 15.21 24.76 24.67 17.13 51.05 23.84 13.56 65.29 28.33 37.14 11.49 11.76 32.35 12 E1b_E3a NovelJunction 0 0.00 0.00 3.02 1.80 4.33 0.00 0.00 2.22 7.15 0.00 0.00 0.00 0.00 0.00 10.01 7.09 0.00 2.28 0.00 3.26 0.00 3.12 13.06 13 I1 Intron 0 19.50 12.71 23.73 13.70 18.93 19.31 10.89 42.80 34.52 53.70 7.95 6.83 4.45 16.58 23.92 9.78 11.40 35.66 23.58 21.70 11.61 14.40 18.84 14 I1_AR1 ActiveIntronRegion 0 19.63 12.78 23.89 13.79 19.05 19.43 10.96 43.07 34.74 54.05 8.00 6.87 4.48 16.69 24.08 9.84 11.48 35.88 23.74 21.84 11.68 14.49 18.96 15 E2_Aa NovelBoundary 0 31.78 42.10 42.40 25.24 38.03 12.61 22.88 69.83 36.05 59.39 6.74 0.00 13.64 10.24 27.20 8.20 16.46 46.18 0.00 5.75 23.04 8.33 25.95 16 ER2a ExonRegion 0 29.19 24.05 58.26 25.26 40.09 40.84 22.73 102.40 72.82 103.60 42.74 10.41 23.41 63.50 95.03 60.38 52.76 81.63 59.46 46.64 42.62 44.70 51.42 17 E2_Da NovelBoundary 0 2.96 5.85 4.49 3.43 8.15 5.34 2.16 11.50 2.92 4.30 2.53 0.00 6.33 4.53 0.00 0.00 4.11 6.26 13.46 2.49 2.72 5.51 12.55 18 E2a_E3a KnownJunction 0 29.34 41.57 86.87 41.32 54.84 90.97 26.90 122.48 89.58 143.87 48.28 26.11 27.76 74.58 160.70 23.41 57.97 91.99 81.13 47.87 45.84 56.76 52.41 19 I2_AR2 ActiveIntronRegion 0 1.32 5.09 8.57 3.18 6.70 2.30 5.79 20.93 4.61 4.81 3.02 6.93 18.21 0.84 5.29 1.86 2.07 6.62 14.95 6.66 1.38 1.96 5.51 20 E3_Aa NovelBoundary 1 3.78 8.95 15.29 5.29 3.90 0.00 8.74 7.76 8.33 12.36 2.05 6.00 6.98 0.00 31.15 4.19 0.00 10.94 17.60 2.49 0.00 2.57 3.41 21 ER3a ExonRegion 0 65.25 22.92 61.03 27.06 41.32 38.86 15.02 90.14 72.36 98.55 37.51 7.95 19.31 57.83 94.39 54.14 50.50 65.27 57.73 41.63 47.04 45.18 42.81 22 ER3b ExonRegion 0 58.42 13.58 11.62 8.18 22.16 14.89 6.30 20.95 17.19 21.33 7.58 4.68 6.38 21.70 38.53 31.50 25.35 12.12 30.45 7.32 11.37 21.25 10.92 23 IG29_SR3 SilentIntergenicRegion 0 3.74 3.19 3.58 4.78 14.70 2.88 4.67 9.09 12.28 7.04 2.27 4.90 3.03 1.59 3.05 3.50 1.29 11.89 13.75 4.59 0.86 2.86 4.61 24 IG29_AR2 ActiveIntergenicRegion 0 0.00 6.10 1.23 0.00 0.00 5.50 5.79 0.45 1.24 2.29 5.80 0.00 0.00 6.62 14.51 6.93 0.00 17.31 3.19 8.83 11.02 19.06 39.81