Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF785 Gene 0 33.18 70.14 84.26 52.47 89.55 58.91 63.36 49.24 48.74 69.08 22.84 20.30 26.17 44.25 52.54 31.53 30.27 87.48 85.91 57.04 29.17 31.50 54.14 2 395216 Transcript 0 13.55 22.38 30.62 19.63 53.22 38.69 33.90 16.10 18.44 24.96 12.59 9.46 12.38 19.83 26.68 19.10 16.58 38.14 44.18 22.56 13.33 13.86 28.38 3 470110 Transcript 0 50.66 120.21 115.40 83.30 124.40 58.87 80.88 66.66 66.93 88.86 25.53 38.07 41.69 53.83 67.70 32.81 31.29 88.89 78.05 76.89 32.81 40.34 60.25 4 443190 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 395222 Transcript 0 2.43 0.90 2.59 0.68 0.55 2.34 2.65 2.85 1.05 3.57 1.29 0.00 1.82 2.44 4.73 2.92 0.49 2.60 1.12 0.91 2.49 1.70 0.60 6 321694 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 IG30 Intergenic 0 7.31 9.46 14.07 10.14 12.27 4.21 12.12 9.19 3.77 16.23 5.87 6.60 9.40 10.57 15.73 8.64 8.00 15.19 13.07 13.74 1.35 1.24 1.94 8 IG30_AR1 ActiveIntergenicRegion 0 7.20 18.83 33.90 19.15 16.58 6.52 20.22 18.61 5.84 37.65 6.15 16.53 10.92 9.11 17.47 17.23 11.60 33.31 24.81 30.39 1.76 2.92 2.35 9 IG30_SR1 SilentIntergenicRegion 0 18.39 14.70 21.29 17.76 22.50 7.30 20.11 16.75 6.19 22.99 15.60 6.92 13.65 24.92 34.36 15.32 15.73 23.79 21.96 19.91 1.48 1.63 3.95 10 ER1a ExonRegion 0 0.00 0.00 1.23 0.00 5.35 1.83 0.00 0.00 0.00 1.15 5.80 0.00 0.00 0.00 3.87 4.95 0.00 6.16 0.00 2.13 2.20 0.00 2.94 11 ER1b ExonRegion 0 32.56 27.01 7.79 7.46 19.67 21.59 23.12 10.43 8.82 18.52 17.89 2.85 1.73 42.26 24.99 25.05 12.65 39.32 22.66 19.65 12.89 3.86 17.72 12 E1_Ac KnownBoundary 0 65.49 69.72 17.77 22.97 37.52 54.40 57.54 27.48 22.66 37.15 48.96 6.15 0.00 73.11 77.38 25.29 40.21 82.24 71.63 39.31 14.21 12.12 16.65 13 ER1c ExonRegion 0 11.23 27.73 45.72 18.39 17.33 30.55 22.22 39.61 29.10 53.31 23.70 2.36 6.73 43.38 38.65 21.00 24.76 72.36 40.54 36.65 21.42 12.17 31.49 14 E1_Da NovelBoundary 0 3.33 5.99 16.76 13.38 3.82 2.90 8.35 12.28 2.37 5.72 7.95 6.30 0.00 4.24 0.00 4.27 0.00 13.27 8.28 9.46 8.28 2.39 8.37 15 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1a_E2b KnownJunction 0 16.52 41.64 90.39 28.83 28.44 34.92 43.50 55.08 48.38 87.76 22.37 0.00 12.50 41.32 25.96 23.33 21.88 103.59 49.79 47.43 41.14 17.33 38.41 17 I1 Intron 0 0.00 0.80 7.88 0.80 3.15 1.44 4.16 4.04 0.72 6.70 3.03 3.10 1.52 10.38 9.91 4.66 3.88 5.77 7.50 2.50 2.59 0.82 2.30 18 I1_SR1 SilentIntronRegion 0 0.00 1.04 9.84 1.06 3.74 1.91 5.13 4.25 0.96 8.16 3.37 4.11 2.01 12.16 11.78 6.19 4.24 7.28 9.39 3.32 2.77 1.08 2.22 19 E2_Ab NovelBoundary 0 18.15 9.47 8.87 3.93 0.00 5.79 11.17 6.90 0.00 8.62 5.32 0.00 7.95 7.36 24.60 12.22 0.00 3.98 0.00 6.52 6.12 5.88 0.00 20 ER2a ExonRegion 0 4.86 1.81 5.17 1.36 1.09 4.69 5.30 5.70 2.10 7.14 2.58 0.00 3.65 4.87 9.46 5.83 0.98 5.20 2.24 1.81 4.98 3.40 1.20 21 ER2b ExonRegion 0 26.55 47.61 132.37 48.32 50.97 57.58 49.94 96.86 76.21 128.88 33.77 2.19 12.43 58.94 60.12 40.61 38.66 168.55 108.34 86.00 48.14 42.17 87.78 22 E2_Da KnownBoundary 0 38.75 74.20 194.20 80.98 45.08 91.65 57.15 111.15 101.74 176.59 38.48 13.20 6.49 92.24 105.07 57.25 26.65 296.97 176.95 94.79 63.32 81.87 117.72 23 E2a_E3a KnownJunction 0 0.00 0.00 12.57 3.40 0.00 6.98 6.71 0.00 0.00 1.29 0.00 0.00 0.00 4.71 4.45 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 24 ER2c ExonRegion 0 33.02 75.29 183.67 73.47 40.02 71.19 61.02 102.09 95.46 153.74 54.29 12.22 13.24 76.19 83.30 51.91 36.60 267.60 202.80 103.26 66.89 61.02 98.15 25 E2b_E3a KnownJunction 0 37.19 85.18 218.15 85.90 55.77 53.38 91.64 106.22 120.98 160.63 68.07 12.90 8.12 81.41 53.77 52.89 51.80 228.33 200.19 135.06 73.14 43.23 79.05 26 ER3a ExonRegion 0 16.78 35.30 41.90 17.75 8.81 12.39 18.28 27.31 24.24 38.23 10.97 3.04 6.52 16.16 16.75 10.51 9.59 47.47 34.82 25.27 12.72 14.29 20.81 27 E3_Da KnownBoundary 0 3.78 120.97 114.34 52.34 47.28 20.78 120.83 93.69 71.67 135.68 36.59 24.31 18.83 44.09 56.37 15.98 30.39 72.46 75.01 79.64 50.72 42.01 52.50 28 E3a_E4a KnownJunction 0 13.11 6.71 4.02 7.92 0.00 5.79 6.49 12.57 14.84 23.34 4.84 5.70 0.00 7.53 10.51 4.02 4.68 4.23 0.00 0.00 0.00 5.57 14.85 29 ER3b ExonRegion 0 23.47 94.42 186.37 105.15 142.34 91.92 101.75 125.90 110.55 186.13 41.02 17.32 29.98 69.73 86.62 63.96 62.17 242.14 252.65 103.16 72.28 71.99 122.06 30 E3_Db KnownBoundary 0 30.60 79.39 303.01 178.13 53.48 57.52 47.87 161.91 143.43 260.59 34.27 36.61 53.41 85.88 71.57 89.29 112.11 290.46 378.36 131.09 87.23 94.12 149.64 31 E3b_E4b KnownJunction 0 0.00 11.58 0.00 0.00 0.00 0.00 5.83 5.46 3.79 3.20 0.00 0.00 0.00 0.00 0.00 3.25 3.46 5.93 0.00 5.18 5.50 0.00 0.00 32 ER3c ExonRegion 0 27.10 44.76 60.01 39.25 101.09 75.55 67.81 32.19 36.87 48.78 19.38 18.92 24.75 39.65 49.49 33.25 33.17 70.11 88.37 42.99 24.46 27.71 53.82 33 E3_Dc NovelBoundary 0 17.41 43.48 12.71 17.61 38.71 28.79 30.56 14.05 4.43 13.32 4.95 7.20 6.66 9.18 4.45 8.03 31.32 17.78 22.21 27.36 17.36 11.45 27.40 34 E4_Aa NovelBoundary 0 73.64 152.60 163.68 127.26 187.95 97.16 129.49 76.69 83.01 104.60 31.69 57.32 26.30 67.51 97.66 31.27 78.07 107.61 122.73 115.75 32.56 67.60 81.44 35 ER4a ExonRegion 0 46.13 130.86 126.27 95.37 136.27 69.27 96.76 90.60 80.74 105.74 37.38 45.81 40.64 66.57 83.32 45.51 37.30 145.05 101.16 109.88 51.77 46.46 67.82 36 E4_Ab KnownBoundary 0 88.53 85.91 137.90 115.40 230.39 78.70 131.56 95.83 73.52 124.83 46.96 18.01 36.52 62.51 90.36 81.18 30.39 196.70 111.72 169.19 45.34 31.60 86.56 37 ER4b ExonRegion 0 113.38 151.36 196.53 145.22 147.08 79.05 99.09 97.43 111.75 150.16 55.31 28.24 43.44 85.00 112.03 52.36 48.14 141.40 179.36 143.34 51.97 56.90 122.66 38 E4_Da KnownBoundary 0 213.82 231.60 272.82 174.07 101.61 62.29 97.60 94.80 157.64 187.90 53.59 43.06 66.39 123.73 178.63 82.97 63.96 128.63 173.84 130.33 48.56 88.85 120.70 39 ER4c ExonRegion 1 92.72 223.06 215.90 146.59 236.93 101.53 139.37 96.82 105.21 137.50 34.36 62.70 84.44 87.39 109.27 48.91 51.90 117.41 132.99 120.78 46.65 68.99 98.08