Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ERI2 Gene 0 21.06 41.82 18.50 16.46 37.68 23.25 42.84 20.53 22.83 56.57 31.07 74.15 37.70 49.99 28.53 39.70 42.41 14.52 11.42 25.44 9.57 15.75 6.74 2 396074 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.18 0.13 0.00 0.37 0.46 0.19 0.00 0.00 0.24 0.00 0.30 1.16 0.65 0.00 0.64 0.55 0.00 0.00 3 389345 Transcript 0 0.00 11.77 3.67 5.56 38.46 28.56 21.24 6.90 9.29 32.02 50.96 24.01 13.47 40.32 22.62 63.57 35.34 11.65 3.95 0.00 9.20 16.23 16.30 4 357967 Transcript 0 20.18 64.12 15.99 14.70 45.37 24.25 37.61 22.61 25.90 57.11 33.35 75.38 38.98 48.69 30.08 42.90 44.86 11.33 9.33 25.16 7.18 15.09 5.42 5 300005 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.18 0.13 0.00 0.37 0.46 0.19 0.00 0.00 0.24 0.00 0.30 1.16 0.65 0.00 0.64 0.55 0.00 0.00 7 ER2a ExonRegion 1 9.75 18.52 0.00 0.02 4.14 23.59 18.01 0.00 0.00 0.96 12.59 2.76 0.00 30.10 17.41 28.42 66.02 5.68 2.46 13.06 12.82 3.06 5.83 8 E2_Da NovelBoundary 0 10.59 3.35 1.71 0.00 0.00 5.00 16.87 2.42 3.36 14.21 14.64 0.00 6.33 12.18 0.00 20.25 35.90 15.59 0.00 5.82 20.76 12.00 8.11 9 E2a_E3a KnownJunction 0 0.00 7.63 1.66 1.80 0.00 2.61 20.62 0.00 0.00 4.41 2.68 0.00 0.00 16.36 4.45 4.36 26.74 2.28 0.00 2.36 15.26 0.00 4.35 10 I2 Intron 0 1.15 1.91 0.72 1.71 2.12 3.26 4.32 1.78 3.09 6.08 6.50 6.80 4.44 13.49 2.18 8.37 7.50 9.44 0.47 6.94 6.53 2.78 2.61 11 I2_AR1 ActiveIntronRegion 1 2.63 4.78 1.51 1.96 2.96 5.07 4.39 3.56 5.34 12.76 10.95 2.68 2.17 22.96 4.69 12.32 14.14 23.10 0.44 17.06 14.61 6.91 3.65 12 ER3a ExonRegion 1 2.68 18.06 2.94 2.79 10.11 15.29 17.54 6.76 11.77 28.82 23.82 54.31 23.52 40.27 4.65 30.60 51.02 16.74 6.09 30.54 16.75 5.15 8.90 13 E3a_E4a KnownJunction 1 6.96 30.92 7.98 5.16 34.80 19.08 31.36 11.25 26.97 65.41 46.12 79.08 27.27 82.70 4.45 37.77 48.53 26.53 28.24 36.56 19.89 8.21 8.02 14 ER4a ExonRegion 0 8.29 42.56 8.71 12.57 31.38 21.90 44.07 13.33 32.20 62.47 63.72 107.36 38.53 88.36 27.94 65.14 128.54 28.20 20.55 53.06 41.06 11.73 9.12 15 E4a_E5a KnownJunction 0 17.41 39.99 10.59 17.05 19.02 16.64 38.02 22.18 40.80 58.05 54.65 110.89 52.92 120.20 43.14 147.31 70.59 60.36 21.93 58.87 37.99 13.96 27.49 16 E5_Aa NovelBoundary 0 3.63 3.35 4.08 0.00 19.69 0.00 8.52 4.27 0.00 2.63 6.90 31.51 7.79 2.47 0.00 8.72 0.00 4.73 0.00 2.75 2.59 0.00 0.00 17 ER5a ExonRegion 1 8.15 32.11 10.10 18.15 40.39 36.82 49.91 17.11 38.94 77.09 58.44 118.42 45.36 87.45 22.10 87.40 83.27 47.75 15.75 52.78 28.44 15.81 8.88 18 E5a_E6a KnownJunction 0 2.82 41.05 8.69 22.01 21.14 37.19 74.94 15.40 31.97 82.65 63.02 97.53 67.53 72.81 27.44 83.23 68.16 33.58 33.60 49.28 24.46 10.35 17.07 19 ER6a ExonRegion 1 14.14 43.55 7.00 18.60 33.17 23.13 50.93 19.22 26.54 75.85 61.35 121.25 40.87 78.07 20.09 64.89 79.64 30.87 19.25 43.49 16.11 16.60 7.28 20 E6_Da NovelBoundary 0 3.78 19.21 0.00 3.63 19.78 0.00 11.70 4.11 7.20 22.73 9.79 19.51 6.49 9.89 4.45 7.09 4.68 0.00 0.00 20.13 0.00 8.57 0.00 21 E6a_E7a KnownJunction 0 14.74 32.63 6.68 12.95 47.96 13.06 38.38 19.88 10.10 47.30 37.75 84.63 20.94 53.74 10.75 59.13 89.85 17.41 8.19 38.41 8.71 14.51 4.35 22 I6 Intron 0 2.22 10.01 1.68 2.53 13.00 8.06 11.99 3.72 14.38 16.04 4.44 31.16 15.97 17.98 4.46 5.46 5.63 1.21 2.30 8.52 0.87 4.38 1.35 23 I6_AR1 ActiveIntronRegion 0 2.26 6.52 0.84 2.48 9.81 5.60 11.30 2.75 8.15 11.99 4.43 24.84 10.88 15.86 2.94 4.99 7.56 0.70 1.95 7.47 1.33 3.18 0.45 24 I6_SR1 SilentIntronRegion 0 0.47 9.52 1.14 2.28 11.67 1.79 4.12 1.03 16.22 13.02 3.25 25.64 11.49 23.65 10.36 2.71 5.55 2.58 0.70 12.95 0.90 7.30 2.45 25 I6_AR2 ActiveIntronRegion 0 2.65 13.53 2.63 2.66 16.46 12.09 14.77 5.36 19.92 20.78 4.79 38.79 22.04 18.64 4.39 6.66 3.85 1.34 3.07 8.41 0.42 4.78 1.93 26 E7_Aa NovelBoundary 1 13.56 20.65 6.33 5.36 14.86 11.58 22.52 5.50 21.61 22.94 9.00 33.46 47.24 33.55 4.45 10.85 4.11 4.27 3.67 6.07 5.13 2.88 0.00 27 ER7a ExonRegion 0 16.79 45.40 5.07 12.27 42.92 22.55 53.09 20.96 19.64 66.71 59.96 103.26 40.49 75.55 32.03 63.47 79.81 14.54 18.42 33.31 14.05 21.85 11.95 28 E7_Da NovelBoundary 0 7.26 34.93 5.14 3.80 24.11 33.39 54.76 12.90 21.33 32.96 17.06 54.02 20.62 29.43 0.00 15.47 8.23 3.73 4.61 14.45 2.72 0.00 0.00 29 E7a_E8a KnownJunction 0 10.15 40.06 9.37 8.62 44.31 15.33 56.88 19.88 23.38 55.58 51.43 87.63 26.30 81.99 57.73 67.76 59.37 9.58 20.14 26.65 22.49 8.76 0.00 30 I7 Intron 0 3.28 12.22 1.42 2.36 10.38 8.53 16.17 5.99 11.06 20.55 3.75 20.40 6.90 12.08 0.40 4.61 3.20 0.72 1.24 7.84 0.85 2.83 2.28 31 I7_AR1 ActiveIntronRegion 0 1.26 5.87 0.27 0.00 4.16 3.49 9.01 2.28 5.99 20.04 2.66 12.45 4.95 12.07 1.21 0.54 0.00 1.31 1.95 8.01 1.56 1.48 3.59 32 I7_SR1 SilentIntronRegion 0 7.38 13.77 1.29 0.91 15.78 14.39 25.63 7.14 13.78 25.67 7.93 16.65 19.00 7.95 0.45 4.72 0.00 0.00 0.57 13.58 0.00 2.24 6.70 33 I7_AR2 ActiveIntronRegion 0 3.23 15.03 2.02 3.91 12.09 9.55 17.37 7.56 12.94 19.73 3.23 25.46 4.78 13.32 0.00 6.60 5.61 0.63 1.08 6.37 0.75 3.67 0.53 34 E8_Aa NovelBoundary 0 13.85 9.47 2.90 0.00 12.73 0.00 10.07 20.21 12.99 26.03 4.37 6.30 6.17 2.47 5.32 12.22 0.00 2.11 0.00 11.12 0.00 7.59 7.68 35 ER8a ExonRegion 0 21.66 48.81 11.66 13.80 34.52 34.01 48.68 22.60 33.91 79.30 76.96 141.71 51.65 91.21 38.21 84.20 75.80 28.10 22.10 34.67 21.63 20.30 9.42 36 E8a_E9a KnownJunction 0 40.16 47.10 4.97 19.88 33.36 31.46 59.88 21.89 44.13 101.75 96.29 211.57 79.86 116.96 41.16 118.52 96.96 32.75 26.07 49.86 22.92 42.07 23.56 37 ER9a ExonRegion 0 21.43 63.00 11.41 15.50 44.50 32.76 62.46 26.59 39.09 84.54 75.14 116.17 50.80 101.77 36.64 82.59 67.65 23.38 13.89 36.05 21.39 23.76 10.10 38 E9_Da NovelBoundary 0 0.00 6.05 2.72 2.06 0.00 5.68 7.95 2.55 2.63 6.55 9.90 32.56 13.64 0.00 4.45 24.10 9.07 0.00 0.00 5.88 0.00 0.00 0.00 39 E9a_E10a KnownJunction 0 9.71 84.72 1.24 4.00 41.77 18.40 17.14 19.30 21.99 39.86 38.48 46.22 19.97 36.20 24.85 43.83 49.18 3.56 0.00 17.90 5.62 5.57 0.00 40 E9a_E10b KnownJunction 0 0.00 11.77 3.67 5.56 38.46 28.56 21.24 6.90 9.29 32.02 50.96 24.01 13.47 40.32 22.62 63.57 35.34 11.65 3.95 0.00 9.20 16.23 16.30 41 E9a_E11a KnownJunction 0 6.82 6.45 6.15 2.06 0.00 0.00 0.00 0.00 1.65 1.02 0.00 5.85 6.82 4.65 19.16 0.00 0.00 0.00 14.40 6.52 0.00 0.00 0.00 42 E10_Aa NovelBoundary 0 3.78 3.35 0.00 4.53 8.40 2.27 18.50 0.00 7.26 13.00 2.16 19.21 0.00 21.19 0.00 11.96 36.65 0.00 0.00 3.26 3.15 0.00 0.00 43 ER10a ExonRegion 0 19.53 62.19 18.37 17.16 47.27 26.48 37.54 20.78 32.92 62.71 35.89 110.81 60.22 66.24 25.68 53.92 53.03 21.57 20.34 35.05 9.56 21.35 10.47 44 E10_Ab KnownBoundary 0 54.45 93.67 48.49 23.04 73.43 21.07 79.23 54.83 53.85 100.11 87.86 92.88 91.88 89.65 36.96 101.60 120.71 43.98 70.03 45.96 27.86 39.31 28.34 45 ER10b ExonRegion 0 29.20 65.49 38.09 23.79 75.35 51.36 88.15 45.28 51.96 107.25 85.34 133.57 92.92 116.98 55.88 110.94 115.69 52.10 33.70 50.37 33.34 30.51 22.12 46 E10_Da KnownBoundary 0 13.19 52.03 27.47 21.58 37.52 44.58 71.10 50.93 43.43 96.41 63.28 87.18 40.09 116.19 44.75 54.09 62.74 36.81 25.51 53.37 28.60 21.62 14.26 47 ER10c ExonRegion 0 31.32 45.45 28.36 22.95 47.07 27.87 58.16 27.74 22.79 68.75 25.67 69.12 36.77 43.62 39.69 30.95 32.39 8.84 7.63 22.52 6.35 18.34 5.80 48 E10_Db NovelBoundary 0 0.00 2.96 4.67 1.80 8.57 0.00 6.76 3.82 5.61 4.70 0.00 6.30 0.00 2.65 8.90 0.00 0.00 5.76 0.00 2.81 0.00 8.76 0.00 49 Ix_SR2 SilentIntronRegion 0 4.54 5.23 1.23 1.36 19.11 5.76 9.65 2.47 3.71 2.95 6.63 9.28 0.00 3.25 16.99 2.97 13.20 7.39 6.37 4.26 0.00 0.00 0.00 50 Ix_AR2 ActiveIntronRegion 0 7.18 5.30 1.12 4.33 24.78 2.15 9.56 1.73 4.83 1.94 3.78 10.73 3.87 5.72 15.89 6.72 10.76 7.15 6.37 2.59 0.00 0.00 0.00 51 Ix_AR1 ActiveIntronRegion 0 6.26 6.37 0.00 5.45 18.50 3.67 6.04 1.65 4.89 1.15 0.50 12.05 4.69 11.23 10.47 7.24 8.47 6.91 5.96 0.37 0.00 0.00 0.00 52 ER11a ExonRegion 0 5.74 8.11 3.25 3.45 0.00 0.00 1.72 3.10 3.48 1.96 2.38 4.85 8.19 10.80 14.86 7.05 7.04 3.12 4.61 4.02 0.00 2.59 0.00 53 E11_Da NovelBoundary 0 6.37 12.30 2.90 3.33 19.69 0.00 0.00 0.00 2.23 9.75 2.47 6.30 13.64 9.18 10.14 0.00 4.77 1.95 0.00 5.94 3.09 0.00 0.00 54 E11a_E12a KnownJunction 0 0.00 2.76 0.00 3.93 0.00 0.00 0.00 0.00 3.94 0.00 0.00 0.00 0.00 4.83 0.00 0.00 4.77 1.78 0.00 0.00 0.00 0.00 0.00 55 ER12a ExonRegion 0 6.14 2.88 0.99 1.81 1.73 0.00 3.40 1.36 3.21 2.80 1.25 0.38 2.49 11.53 3.08 5.42 5.43 2.22 2.06 1.37 1.73 0.00 0.00 56 E12a_E13a KnownJunction 0 5.85 5.59 3.40 3.70 0.00 0.00 4.50 6.37 2.86 4.78 2.11 0.00 0.00 8.77 0.00 3.42 3.46 3.94 0.00 0.00 6.12 0.00 0.00 57 E13_Aa NovelBoundary 1 22.52 2.63 4.49 4.96 11.54 4.77 4.15 3.53 0.00 3.06 8.79 6.30 59.74 100.83 57.85 6.75 113.42 0.00 4.80 0.00 8.28 0.00 3.41 58 ER13a ExonRegion 0 5.25 7.86 4.16 2.17 4.54 0.35 2.11 3.20 2.00 4.59 3.46 4.31 4.03 6.42 3.22 4.81 2.15 1.02 1.80 2.81 1.20 0.59 0.00 59 ER13b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00