Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ATP2A1 Gene 0 3.76 3.17 30.62 6.69 6.91 4.49 6.33 11.34 23.21 18.17 10.06 2.25 3.89 7.16 8.62 10.14 10.35 14.30 5.25 14.61 5.97 3.04 3.72 2 357084 Transcript 0 0.00 0.00 13.31 4.46 5.60 1.25 7.49 8.44 20.48 15.65 0.00 2.16 0.00 0.00 0.00 0.00 0.00 8.35 0.00 2.84 0.00 0.00 0.00 3 395498 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 395503 Transcript 0 1.71 0.00 1.98 2.17 0.02 0.00 0.00 0.89 1.90 0.89 10.11 0.00 2.41 2.30 10.38 6.77 6.27 2.15 0.00 0.00 4.03 0.17 1.66 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.10 1.44 0.62 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1b ExonRegion 0 0.72 1.38 16.33 2.23 4.11 0.31 3.57 6.38 13.32 8.22 1.65 2.29 0.00 1.07 2.37 1.51 2.80 7.67 7.02 5.13 2.61 1.41 2.99 7 E1_Da NovelBoundary 0 0.00 0.00 6.33 1.70 0.00 11.41 1.68 9.32 5.96 16.20 0.00 5.40 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.44 0.00 0.00 8 I1 Intron 0 5.94 5.71 12.36 3.69 5.30 2.42 4.15 5.95 10.94 11.28 19.46 9.33 1.91 5.63 9.30 4.41 10.35 5.30 5.26 6.32 2.18 1.38 4.85 9 I1_SR2 SilentIntronRegion 0 2.12 0.00 9.80 2.73 5.35 0.00 2.65 3.46 14.82 7.26 5.80 4.33 0.00 0.81 2.90 0.00 6.60 3.08 0.00 2.13 0.00 0.69 2.94 10 I1_AR2 ActiveIntronRegion 0 8.14 7.87 15.26 4.80 6.88 3.34 4.03 7.21 13.00 14.36 25.97 9.72 2.64 7.44 11.42 6.09 13.31 6.90 7.25 8.26 3.01 1.42 6.44 11 E2a_E3a KnownJunction 0 0.00 0.00 26.61 4.69 6.28 0.00 1.90 4.97 20.80 5.21 2.63 0.00 0.00 0.00 0.00 0.00 0.00 6.26 3.58 2.43 0.00 0.00 0.00 12 ER2a ExonRegion 0 0.00 0.00 28.86 1.82 6.24 0.00 0.88 2.78 12.76 6.50 2.15 0.00 0.00 0.00 0.00 0.00 0.00 4.31 1.24 5.44 0.00 0.00 0.00 13 E3_Aa NovelBoundary 0 0.00 2.89 9.43 4.86 3.65 0.00 0.00 4.72 3.07 8.84 9.37 0.00 0.00 14.72 4.45 3.93 0.00 8.25 0.00 6.07 3.03 0.00 0.00 14 ER3a ExonRegion 0 1.30 1.25 28.08 3.79 15.38 5.50 4.71 7.48 22.25 12.69 6.52 2.19 4.69 7.98 11.99 5.98 2.03 8.30 5.30 7.72 1.22 2.56 2.55 15 E3_Da NovelBoundary 0 3.63 11.45 58.81 10.35 68.51 28.22 50.39 13.43 7.55 57.48 49.91 5.85 0.00 23.90 61.19 19.40 10.75 16.42 16.57 36.50 5.44 6.06 7.68 16 E3a_E4a KnownJunction 0 0.00 0.00 26.20 5.59 15.28 0.00 6.23 6.53 28.24 10.05 0.00 0.00 0.00 0.00 0.00 3.85 0.00 9.08 12.80 8.63 0.00 0.00 4.18 17 I3 Intron 0 1.38 1.17 7.14 0.93 3.90 1.83 2.54 2.76 3.03 7.47 10.15 0.58 0.44 4.65 5.47 3.76 3.41 3.38 2.32 4.40 2.78 0.64 0.45 18 I3_AR1 ActiveIntronRegion 0 4.13 4.62 21.54 2.45 10.53 5.23 8.21 6.24 6.41 21.51 31.56 1.62 1.17 12.96 17.40 12.14 11.99 9.03 8.19 10.61 6.00 0.95 0.44 19 E4_Aa NovelBoundary 0 3.70 2.43 12.39 3.06 15.79 0.00 8.74 14.87 11.43 11.82 2.53 0.00 0.00 4.59 14.96 4.02 4.58 14.22 9.60 8.44 0.00 0.00 0.00 20 ER4a ExonRegion 0 1.87 3.76 29.44 8.09 7.57 3.67 9.65 10.77 24.71 15.16 10.58 0.00 0.04 4.83 0.06 6.88 4.81 14.08 6.83 10.76 1.18 3.27 3.75 21 E4a_E5a KnownJunction 0 2.96 2.70 36.10 8.46 18.00 0.00 4.50 13.14 26.56 16.98 20.06 0.00 0.00 0.00 0.00 8.72 0.00 18.45 4.14 12.66 0.00 5.39 0.00 22 ER5a ExonRegion 0 2.94 1.30 35.37 6.17 6.85 3.80 3.40 11.89 27.89 22.62 15.17 0.00 0.00 4.45 1.06 3.40 7.93 16.67 4.38 17.33 2.28 4.50 3.19 23 E5a_E6a KnownJunction 0 7.48 3.35 48.52 12.75 11.46 5.28 0.00 15.65 34.00 26.51 7.95 0.00 0.00 2.18 0.00 3.33 8.04 14.51 0.00 21.86 2.41 0.00 0.00 24 ER6a ExonRegion 0 4.02 1.46 35.96 8.33 8.62 6.81 8.17 9.07 29.32 24.52 12.70 0.00 2.43 4.77 4.37 7.71 6.89 23.22 0.47 17.18 2.26 4.32 2.43 25 E6a_E7a KnownJunction 0 3.78 3.35 38.56 7.56 6.71 10.51 15.77 2.42 23.38 14.72 16.85 0.00 0.00 7.30 4.45 12.65 9.54 24.50 0.00 14.38 5.31 4.96 3.84 26 ER7a ExonRegion 0 6.45 7.83 33.83 10.27 11.73 8.08 10.98 15.56 28.71 18.28 14.34 0.00 0.71 3.66 5.36 10.78 10.25 23.18 4.30 15.96 4.61 7.12 4.44 27 E7a_E8a KnownJunction 0 9.63 0.00 40.06 11.15 7.22 0.00 12.10 19.10 42.36 24.34 14.64 0.00 7.14 2.47 4.45 13.07 8.32 22.92 4.80 17.77 0.00 15.43 3.24 28 ER8a ExonRegion 0 5.83 3.98 33.62 8.78 7.46 1.97 6.35 11.80 31.60 28.59 9.15 0.00 4.99 6.46 7.95 9.41 7.17 16.43 4.19 17.21 7.59 2.79 5.60 29 E8a_E9a KnownJunction 0 7.26 3.35 89.50 66.89 3.65 2.50 6.98 72.04 127.54 174.39 9.79 0.00 0.00 2.12 0.00 4.02 8.70 30.30 0.00 8.44 8.90 0.00 8.11 30 ER9a ExonRegion 0 6.55 4.46 19.99 2.46 10.30 3.47 8.93 5.39 27.73 14.25 9.28 0.83 0.11 8.80 4.99 8.10 6.40 18.30 6.50 15.10 5.29 0.31 3.59 31 E9a_E10a KnownJunction 0 0.00 2.70 19.37 5.16 4.33 4.54 10.20 3.70 26.74 10.13 2.05 5.25 0.00 0.00 4.45 3.50 12.81 6.84 3.48 18.28 0.00 5.33 0.00 32 ER10a ExonRegion 0 4.85 2.38 17.16 6.14 8.51 2.68 7.41 6.66 26.85 11.98 13.16 6.32 5.64 7.63 7.24 17.13 16.32 15.61 4.40 14.39 2.53 5.38 3.70 33 E10_Da NovelBoundary 0 10.67 0.00 21.29 4.06 15.62 0.00 6.45 11.38 7.87 15.79 7.42 18.91 13.15 4.94 14.96 19.99 9.26 9.74 19.95 6.26 9.45 0.00 7.51 34 E10a_E11a KnownJunction 0 0.00 2.63 21.76 3.66 0.00 0.00 1.94 3.98 23.84 6.69 10.11 0.00 6.66 12.36 6.30 3.25 4.02 5.60 11.48 5.31 0.00 0.00 3.50 35 E11_Aa NovelBoundary 0 10.67 0.00 8.69 2.06 4.24 0.00 0.00 0.00 3.04 6.98 7.11 0.00 0.00 13.30 0.00 24.61 13.28 9.12 0.00 11.89 2.53 0.00 4.35 36 ER11a ExonRegion 0 3.14 3.63 15.88 5.50 3.61 0.77 6.44 9.40 19.33 8.55 10.25 1.77 4.51 8.37 11.94 6.12 16.73 15.03 4.27 9.73 5.88 0.00 2.62 37 E11_Da NovelBoundary 0 3.48 0.00 14.34 5.13 0.00 24.08 0.00 0.00 2.98 3.95 13.27 6.30 0.00 4.94 31.15 14.01 17.39 12.48 0.00 3.26 3.15 0.00 7.94 38 E11a_E12a KnownJunction 0 0.00 3.35 17.59 9.42 3.82 2.21 5.74 4.68 18.58 6.72 2.68 0.00 0.00 2.41 0.00 0.00 7.39 2.45 0.00 9.01 5.25 0.00 0.00 39 Ix Intron 0 2.52 1.45 5.22 2.42 5.74 2.62 0.63 1.84 2.19 4.07 4.61 0.85 2.96 9.88 11.10 8.50 7.87 4.82 0.76 1.01 2.63 1.99 2.10 40 Ix_SR1 SilentIntronRegion 0 2.55 1.47 5.27 2.44 5.79 2.65 0.64 1.86 2.21 4.11 4.65 0.86 2.99 9.97 11.21 8.58 7.94 4.86 0.77 1.02 2.65 2.00 2.12 41 E12_Aa NovelBoundary 0 0.00 0.00 11.15 3.20 8.32 8.35 2.16 0.00 4.66 3.63 4.74 18.16 0.00 14.36 8.90 12.13 13.93 8.04 0.00 5.82 0.00 2.82 4.18 42 ER12a ExonRegion 0 3.50 7.52 28.80 11.71 12.20 6.95 4.94 12.91 21.78 12.14 10.97 6.69 2.38 14.69 9.17 11.48 10.70 14.71 3.69 11.30 7.41 2.41 3.98 43 E12_Da NovelBoundary 0 0.00 0.00 7.18 1.83 3.65 14.42 3.75 7.76 3.07 3.84 2.42 0.00 12.99 9.65 0.00 7.18 0.00 1.66 0.00 2.62 2.97 0.00 0.00 44 E12a_E13a KnownJunction 0 10.89 0.00 30.40 8.52 8.06 2.33 3.93 7.93 11.02 12.84 7.05 0.00 6.82 2.94 0.00 0.00 8.23 12.10 0.00 9.78 11.55 0.00 13.06 45 E13_Aa NovelBoundary 0 0.00 0.00 14.31 7.49 4.07 0.00 0.00 12.28 2.40 4.62 0.00 0.00 6.82 2.47 0.00 4.36 9.16 1.74 4.80 3.26 2.35 0.00 0.00 46 ER13a ExonRegion 0 8.21 3.68 38.27 9.85 8.96 3.62 8.58 13.35 17.78 15.75 9.88 3.02 3.76 9.51 5.13 12.24 8.96 15.96 1.87 14.02 5.75 3.42 5.24 47 E13_Da NovelBoundary 0 11.34 0.00 27.82 1.60 4.16 5.62 0.00 5.75 4.37 8.95 4.74 0.00 0.00 11.89 0.00 15.38 12.81 8.50 4.80 5.94 7.91 3.00 4.18 48 E13a_E14a KnownJunction 0 0.00 3.22 34.12 5.33 15.53 5.79 12.50 18.94 21.64 10.69 5.37 0.00 0.00 9.36 4.70 0.00 0.00 20.69 4.80 8.50 8.34 0.00 0.00 49 E14_Aa NovelBoundary 0 10.22 0.00 20.49 1.27 12.99 2.84 1.85 0.00 4.60 3.73 2.26 0.00 0.00 3.00 15.95 24.27 9.54 4.89 0.00 3.26 6.30 0.00 0.00 50 ER14a ExonRegion 0 4.01 4.69 31.07 6.76 8.45 6.42 7.15 13.07 19.60 20.58 7.33 4.96 3.60 10.55 6.94 10.94 12.22 15.70 2.17 18.83 6.66 3.03 2.11 51 E14_Da NovelBoundary 0 0.00 0.00 0.00 3.73 3.57 0.00 0.00 6.57 4.83 2.44 9.27 0.00 6.49 4.36 0.00 26.75 9.07 0.00 0.00 2.94 2.59 2.51 0.00 52 E14a_E15a KnownJunction 0 0.00 6.38 27.85 3.40 7.56 2.90 6.09 10.15 25.58 25.04 9.48 0.00 0.00 12.18 0.00 0.00 0.00 11.90 4.71 26.01 5.25 2.88 0.00 53 ER15a ExonRegion 0 4.82 3.89 38.43 7.29 4.51 5.03 6.38 11.98 18.71 22.12 10.30 3.56 3.52 10.79 15.47 13.66 11.10 17.93 6.12 20.85 7.61 2.75 4.46 54 E15a_E16a KnownJunction 0 0.00 0.00 39.47 6.83 4.33 5.34 6.58 13.84 26.74 20.36 4.84 0.00 0.00 2.30 6.30 3.85 12.90 23.09 3.67 20.39 4.82 0.00 0.00 55 E16_Aa NovelBoundary 0 3.78 0.00 1.18 1.83 0.00 0.00 0.00 7.35 9.37 1.58 2.63 0.00 0.00 10.36 27.81 49.90 9.07 1.74 17.60 14.38 2.59 2.39 0.00 56 ER16a ExonRegion 0 3.08 1.15 37.78 8.41 5.88 3.97 5.12 19.23 25.36 24.44 9.66 2.47 7.02 8.25 16.69 12.25 17.43 16.11 6.59 25.27 6.98 2.96 4.28 57 E16_Da NovelBoundary 0 5.70 0.00 5.09 0.00 0.00 0.00 0.00 3.86 2.98 1.67 0.00 0.00 8.28 2.47 0.00 10.85 13.37 4.27 0.00 3.07 0.00 0.00 4.27 58 E16a_E17a KnownJunction 0 3.78 3.35 34.18 14.42 0.00 0.00 4.50 11.25 18.78 24.34 14.64 0.00 6.82 7.30 0.00 8.54 9.54 18.53 0.00 16.49 5.75 2.39 4.01 59 E17_Aa NovelBoundary 0 5.93 0.00 6.86 0.00 0.00 0.00 1.68 4.44 1.79 2.85 2.68 0.00 0.00 0.00 6.18 11.88 22.35 3.77 0.00 5.94 5.75 0.00 0.00 60 ER17a ExonRegion 0 3.31 2.26 28.70 11.22 2.57 1.00 7.62 13.80 26.46 17.36 7.04 0.00 7.32 9.46 5.29 9.40 24.28 11.21 6.28 11.80 13.31 2.60 3.38 61 E17_Da KnownBoundary 0 10.30 0.00 36.31 12.19 11.88 2.38 5.83 16.68 38.43 19.29 9.27 0.00 0.00 6.89 4.45 4.10 12.53 20.85 13.93 5.62 10.63 0.00 0.00 62 ER17b ExonRegion 0 3.63 2.39 33.48 6.72 2.70 10.54 4.75 8.75 22.89 15.37 9.71 5.23 7.97 7.81 7.52 16.30 10.49 7.04 3.99 11.90 6.88 2.50 2.35 63 E17_Db NovelBoundary 0 0.00 0.00 3.16 0.00 4.33 0.00 0.00 0.00 3.21 0.00 6.90 0.00 0.00 0.00 4.45 0.00 18.14 4.10 0.00 5.75 5.44 0.00 0.00 64 E17b_E18a KnownJunction 0 7.48 0.00 29.42 6.46 0.00 11.36 5.83 7.27 25.67 18.70 14.37 12.00 0.00 2.47 5.19 3.93 4.21 9.49 0.00 5.50 11.24 0.00 0.00 65 E18_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 2.22 0.00 0.00 2.68 0.00 0.00 4.53 14.22 14.70 4.68 2.53 0.00 10.29 0.00 0.00 3.41 66 ER18a ExonRegion 0 2.61 2.86 38.60 6.26 1.68 6.06 7.19 11.34 23.80 16.30 10.54 0.91 4.58 7.99 4.32 6.01 6.83 13.51 5.48 13.53 6.15 3.85 0.07 67 E18a_E19a KnownJunction 0 0.00 6.18 57.72 7.19 4.16 0.00 10.20 6.49 21.73 20.58 14.00 0.00 0.00 2.24 0.00 0.00 0.00 7.92 0.00 21.22 3.15 8.70 0.00 68 E19_Aa NovelBoundary 0 3.41 0.00 0.00 1.86 7.72 0.00 4.50 4.23 0.00 4.38 2.58 0.00 0.00 6.77 26.21 28.03 17.67 11.69 0.00 5.88 5.37 0.00 0.00 69 ER19a ExonRegion 0 2.42 4.36 46.88 7.74 12.38 8.21 12.23 12.37 22.10 23.20 13.47 1.23 6.93 6.01 9.37 9.78 13.38 11.05 3.80 17.01 7.66 4.85 4.45 70 E19_Da NovelBoundary 0 0.00 0.00 1.57 0.00 7.13 0.00 9.67 7.39 0.00 2.44 0.00 0.00 0.00 2.47 9.64 15.89 12.90 8.83 0.00 6.33 0.00 0.00 0.00 71 E19a_E20a KnownJunction 0 0.00 0.00 39.09 2.03 15.45 8.46 2.08 6.37 20.23 17.54 7.26 6.60 6.01 7.36 0.00 3.93 4.11 9.00 0.00 14.32 3.15 2.63 0.00 72 ER20a ExonRegion 0 5.24 4.70 46.84 6.38 12.77 12.85 5.12 17.05 25.86 29.36 13.64 2.86 2.27 4.31 9.22 8.24 12.34 16.08 8.10 17.90 13.67 6.48 3.93 73 E20_Da NovelBoundary 0 13.71 0.00 2.66 1.83 14.35 5.45 0.00 1.89 1.27 0.00 0.00 0.00 0.00 2.18 0.00 8.63 14.87 4.39 0.00 0.00 0.00 0.00 0.00 74 E20a_E21a KnownJunction 0 3.11 5.99 46.95 11.45 3.48 2.16 3.97 16.88 29.80 23.56 16.79 13.80 0.00 4.71 0.00 0.00 9.16 14.55 0.00 22.88 9.20 3.12 8.62 75 ER21a ExonRegion 0 1.35 0.59 36.03 9.32 3.79 4.77 8.95 15.29 36.41 26.03 19.61 6.31 6.12 9.32 12.39 9.85 14.69 12.57 5.70 16.84 9.39 2.40 3.29 76 E21_Da NovelBoundary 0 0.00 2.89 22.83 1.76 16.30 2.21 0.00 8.83 0.00 10.74 2.42 0.00 6.82 0.00 0.00 16.49 13.18 8.37 0.00 0.00 5.62 0.00 4.01 77 E21a_E22a KnownJunction 0 2.82 0.00 1.80 4.06 0.00 0.00 0.00 0.00 3.59 1.40 10.00 0.00 6.33 4.77 18.54 15.72 13.46 4.60 0.00 0.00 8.22 0.00 3.93 78 E21a_E23a KnownJunction 0 0.00 0.00 26.61 8.92 11.21 2.50 13.87 15.44 40.34 31.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.71 0.00 5.69 0.00 0.00 0.00 79 E22_Aa NovelBoundary 0 0.00 0.00 3.67 1.90 4.07 2.16 0.00 2.55 1.50 5.99 2.53 0.00 0.00 9.65 14.83 16.24 9.26 4.27 8.66 11.57 3.15 0.00 0.00 80 ER22a ExonRegion 0 2.32 0.00 2.51 2.43 0.06 0.00 0.00 0.70 2.12 1.28 10.54 0.00 0.89 2.13 8.15 4.60 5.34 1.85 0.00 0.00 3.88 0.50 1.05 81 E22_Da NovelBoundary 0 6.30 0.00 10.67 7.36 3.57 2.56 6.23 0.00 6.02 3.49 7.48 0.00 0.00 12.24 13.35 33.41 0.00 0.00 3.58 9.46 5.56 0.00 13.83 82 E22a_E23a KnownJunction 0 0.00 0.00 1.63 0.00 0.00 0.00 0.00 1.97 0.00 0.00 9.79 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83 E23_Aa NovelBoundary 0 13.34 9.14 10.44 3.70 3.82 0.00 2.03 1.60 15.19 10.26 14.16 5.70 0.00 2.65 4.45 19.65 24.59 6.67 0.00 5.18 5.81 0.00 0.00 84 ER23a ExonRegion 0 3.63 3.07 26.46 4.98 5.27 4.36 5.07 12.86 27.45 14.24 13.53 0.00 9.50 6.17 16.95 23.49 16.45 15.14 10.39 10.39 5.33 4.82 5.82 85 ER23b ExonRegion 0 2.12 0.00 3.46 0.28 1.85 0.00 0.00 1.85 5.75 2.29 3.87 0.00 0.32 2.02 5.90 5.43 3.30 0.06 3.19 6.24 4.41 0.00 4.05 86 ER23c ExonRegion 0 1.92 0.00 1.00 0.00 0.00 0.00 0.00 0.16 2.98 1.72 3.60 0.00 0.00 0.00 3.03 2.70 2.70 0.00 1.88 1.64 2.40 0.00 0.27