Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CLN3 Gene 0 66.79 37.08 96.63 45.12 43.71 43.18 31.80 51.30 74.54 80.85 90.42 24.90 23.63 102.37 108.59 93.87 87.11 85.51 72.96 50.04 60.17 57.35 72.41 2 360019 Transcript 0 15.77 1.73 3.00 2.56 10.56 9.96 5.15 7.61 2.57 3.40 35.58 4.49 6.50 11.45 11.51 11.55 14.02 2.24 5.77 0.11 2.08 2.69 6.45 3 357076 Transcript 0 6.75 1.49 2.82 5.44 0.00 6.16 1.04 3.00 9.29 1.45 2.57 1.36 2.75 2.49 5.77 3.36 0.00 5.86 9.86 1.70 0.00 0.00 0.00 4 354630 Transcript 0 0.71 0.68 2.45 0.68 3.66 2.70 10.71 1.73 3.07 5.34 0.64 1.68 2.35 2.27 1.53 1.57 2.02 1.80 0.53 0.65 0.06 0.06 0.16 5 395653 Transcript 0 0.00 0.00 1.45 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 2.88 4.27 6 357806 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 355477 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 8 357857 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 333496 Transcript 0 6.45 0.00 8.16 1.60 3.65 2.21 3.89 0.00 1.77 2.26 2.68 0.00 7.63 0.00 6.30 4.36 0.00 1.58 4.33 8.63 0.00 0.00 0.00 10 359984 Transcript 0 23.58 8.56 10.70 4.72 14.94 21.87 14.36 6.30 11.86 18.70 8.56 2.18 6.90 16.91 18.62 20.03 37.51 24.46 18.84 12.09 18.63 6.80 25.38 11 IG44_AR2 ActiveIntergenicRegion 0 4.54 0.00 0.15 0.51 5.77 1.26 1.21 0.63 0.60 0.71 13.73 1.19 0.64 4.14 3.52 6.85 3.63 0.46 0.53 0.35 0.00 0.00 0.00 12 ER1a ExonRegion 0 15.77 1.73 3.00 2.56 10.56 9.96 5.15 7.61 2.57 3.40 35.58 4.49 6.50 11.45 11.51 11.55 14.02 2.24 5.77 0.11 2.08 2.69 6.45 13 E1_Ab KnownBoundary 0 19.71 6.45 5.03 1.23 15.53 21.52 5.39 19.96 4.54 6.39 58.96 12.60 12.50 22.37 33.25 24.52 20.20 2.40 9.04 0.00 5.99 0.00 7.68 14 E1_Ac NovelBoundary 0 116.69 39.93 12.71 2.83 29.80 70.36 19.92 14.09 12.50 11.52 45.27 0.00 0.00 25.55 13.60 43.83 58.91 29.89 24.47 13.29 13.65 17.45 61.12 15 ER1b ExonRegion 1 114.52 46.84 25.95 7.30 27.62 87.30 30.78 30.49 23.25 20.44 92.43 6.49 1.34 51.33 46.73 63.69 73.09 47.84 28.67 16.03 18.10 23.74 68.59 16 E1a_E1d KnownJunction 1 234.41 100.57 52.63 20.38 56.37 153.78 94.29 41.44 47.34 32.96 107.13 6.45 6.33 106.72 79.61 76.30 102.20 96.79 83.11 32.28 33.92 61.29 101.84 17 ER1c ExonRegion 1 160.68 70.16 31.25 13.40 37.91 111.40 60.02 32.26 32.32 24.37 99.22 0.00 5.86 90.27 66.97 84.95 105.63 70.06 64.77 24.47 24.98 45.49 100.82 18 ER1d ExonRegion 0 23.58 8.56 10.70 4.72 14.94 21.87 14.36 6.30 11.86 18.70 8.56 2.18 6.90 16.91 18.62 20.03 37.51 24.46 18.84 12.09 18.63 6.80 25.38 19 E1_Ad KnownBoundary 1 9.63 3.35 14.81 14.52 7.47 0.00 2.25 9.20 13.63 31.72 15.95 0.00 0.00 18.48 10.38 7.26 54.04 13.43 12.80 8.76 31.01 5.33 12.55 20 ER1e ExonRegion 1 66.40 27.93 39.31 19.36 32.24 63.88 28.14 31.93 45.34 44.50 81.69 5.55 18.18 76.74 88.12 88.03 104.21 64.40 87.29 34.18 50.56 49.47 89.77 21 E1b_E2a KnownJunction 1 32.23 3.22 48.85 6.53 27.25 13.12 2.08 35.32 52.72 35.03 63.65 0.00 33.28 52.62 85.67 58.79 109.40 62.30 28.05 21.67 41.82 22.11 56.25 22 E1b_E3a NovelJunction 0 0.00 0.00 8.22 3.00 4.33 2.67 2.25 2.51 15.36 6.82 5.26 0.00 6.82 5.30 4.45 12.99 13.46 0.00 0.00 0.00 0.00 3.12 3.24 23 ER2a ExonRegion 0 28.16 9.32 76.27 19.58 20.83 17.90 14.48 37.13 47.17 57.98 82.63 21.26 33.48 118.70 125.05 96.95 89.21 92.79 86.37 47.08 51.58 68.02 91.15 24 E2a_E3a KnownJunction 0 19.78 27.17 116.55 50.38 30.39 27.26 15.10 56.60 70.63 91.12 97.66 30.31 37.98 138.38 148.59 194.91 91.63 147.37 135.72 53.69 70.12 116.83 117.55 25 ER3a ExonRegion 0 41.59 34.55 118.84 52.04 69.10 74.60 50.38 58.84 88.53 91.01 150.13 35.66 21.08 130.05 167.32 173.33 121.79 143.50 172.96 75.81 91.22 93.26 138.90 26 E3a_E4a KnownJunction 0 76.75 39.40 126.49 46.95 95.84 94.72 60.64 77.34 111.52 100.57 170.36 18.16 34.41 123.37 184.19 94.51 149.23 119.76 136.00 71.97 112.56 56.64 69.83 27 E3a_E5a KnownJunction 0 0.00 0.00 1.45 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 2.88 4.27 28 E3a_E6a KnownJunction 0 6.45 0.00 8.16 1.60 3.65 2.21 3.89 0.00 1.77 2.26 2.68 0.00 7.63 0.00 6.30 4.36 0.00 1.58 4.33 8.63 0.00 0.00 0.00 29 E4_Aa NovelBoundary 0 36.67 10.06 1.83 5.36 31.83 8.57 22.17 7.19 3.41 8.62 2.68 0.00 0.00 2.47 12.61 8.37 0.00 2.40 4.80 8.31 0.00 3.12 12.46 30 ER4a ExonRegion 0 67.32 38.24 120.73 43.27 74.03 96.27 57.54 62.49 91.55 95.96 148.54 27.54 23.45 112.70 139.10 111.58 110.40 95.42 103.83 75.97 112.17 69.31 75.70 31 E4_Da NovelBoundary 0 3.26 13.94 6.62 4.96 4.33 5.00 1.99 16.47 6.45 5.45 4.26 0.00 0.00 9.95 6.30 7.01 0.00 5.55 0.00 3.26 0.00 0.00 0.00 32 E4a_E5a KnownJunction 0 112.17 52.29 143.67 64.83 75.72 113.74 43.15 57.05 82.15 98.61 166.46 19.96 35.22 86.59 142.78 134.07 76.02 90.04 195.39 47.17 119.85 79.17 78.11 33 E4a_E6a KnownJunction 0 0.00 0.00 4.91 3.63 8.06 5.05 1.81 4.23 0.00 7.01 4.00 0.00 0.00 0.00 13.35 4.02 4.77 7.46 0.00 8.56 0.00 0.00 0.00 34 E5_Aa NovelBoundary 0 47.86 0.00 11.41 1.90 16.38 0.00 4.50 8.63 11.66 8.54 9.95 0.00 0.00 0.00 0.00 8.54 4.02 5.22 7.81 8.88 0.00 9.37 8.71 35 ER5a ExonRegion 0 128.05 58.06 149.68 60.75 50.94 56.62 32.65 52.87 126.09 99.67 144.63 50.98 47.08 160.34 193.73 157.08 142.64 142.23 122.72 80.11 117.71 103.39 125.73 36 E5a_E6a KnownJunction 0 106.39 52.16 164.22 55.64 50.93 38.33 17.62 69.91 114.73 98.40 95.55 77.43 19.48 139.56 189.13 103.05 113.14 100.44 88.38 100.61 96.99 60.25 96.29 37 ER6a ExonRegion 0 82.86 41.07 140.12 63.74 39.23 33.56 38.58 64.46 107.86 101.41 117.59 54.37 39.87 151.48 157.95 134.75 110.70 137.81 106.12 77.98 110.13 66.14 91.79 38 E6a_E7a KnownJunction 0 114.91 39.34 161.67 94.69 41.26 50.08 37.19 74.59 115.59 127.73 84.97 52.52 66.72 175.59 199.52 153.89 116.32 143.30 100.05 64.68 100.02 62.95 138.80 39 E6a_E9a KnownJunction 0 6.15 2.83 17.30 4.73 3.65 5.68 6.32 2.55 11.86 2.69 0.00 5.70 0.00 2.47 0.00 0.00 0.00 2.03 0.00 9.14 0.00 2.39 6.83 40 E6a_E10a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.77 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER7a ExonRegion 0 85.04 39.92 170.86 79.91 52.89 52.45 45.67 62.56 95.48 117.13 106.23 30.72 45.49 179.30 164.74 139.32 125.21 150.83 93.82 83.44 92.28 68.10 122.70 42 E7a_E8a KnownJunction 0 58.45 35.78 146.65 55.57 41.60 30.95 37.32 53.31 88.80 94.02 85.34 25.06 55.52 173.11 96.42 125.86 84.99 110.02 59.20 67.75 86.12 33.49 69.74 43 E7a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 44 ER8a ExonRegion 0 58.17 45.20 108.42 36.43 49.19 40.20 39.58 48.08 82.72 102.93 84.54 24.83 25.66 137.44 118.79 83.94 93.43 108.50 58.24 60.37 76.10 42.16 64.48 45 E8a_E9a KnownJunction 1 97.50 64.00 118.89 32.80 73.60 44.29 57.90 46.25 68.49 121.15 111.98 0.00 19.80 151.63 124.36 106.98 91.16 133.27 92.80 74.08 76.73 60.68 86.81 46 E9_Aa NovelBoundary 0 23.49 6.12 11.38 11.82 4.16 4.71 7.38 16.76 8.62 9.00 9.79 0.00 0.00 9.54 4.94 16.24 4.77 17.62 7.91 5.82 8.71 0.00 4.01 47 ER9a ExonRegion 0 122.83 59.53 144.25 54.48 68.65 52.50 44.76 63.97 100.30 118.65 101.52 25.67 26.85 163.82 118.23 122.30 112.46 135.34 96.18 62.42 77.60 73.73 105.10 48 E9a_E10a KnownJunction 0 119.28 64.07 116.20 54.34 85.99 56.90 47.47 88.84 109.98 97.97 90.39 48.47 12.50 149.98 174.79 163.63 133.80 119.97 125.74 52.35 73.27 63.19 148.19 49 ER10a ExonRegion 0 88.35 61.48 130.83 52.51 67.01 71.17 42.62 65.35 122.83 138.21 99.93 57.02 21.55 169.70 159.82 126.54 136.74 83.19 94.68 62.43 66.44 91.50 127.96 50 E10_Da NovelBoundary 0 17.41 5.79 13.93 7.89 12.39 24.42 6.05 17.00 8.83 18.78 10.27 11.40 6.82 5.30 4.45 21.11 12.62 10.53 0.00 2.43 2.97 3.06 0.00 51 E10a_E11a KnownJunction 0 95.28 68.34 146.54 54.27 85.99 54.85 39.00 57.59 128.18 145.35 164.73 45.01 33.60 173.35 188.76 96.81 144.37 71.26 76.05 66.15 79.14 92.89 108.41 52 E10_Db NovelBoundary 0 16.30 21.84 14.75 9.66 19.35 17.04 14.79 6.08 2.98 11.42 7.42 0.00 0.00 9.18 0.00 22.47 3.83 20.31 0.00 6.52 3.09 3.12 7.77 53 E10b_E12a KnownJunction 0 0.00 0.00 0.00 0.00 3.90 0.00 11.13 0.00 1.68 1.13 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER10b ExonRegion 0 1.41 1.36 4.90 1.36 3.42 5.40 10.30 3.46 4.46 9.56 1.29 3.37 4.69 2.08 3.06 3.14 4.03 3.59 1.06 1.30 0.12 0.12 0.33 55 E11_Aa NovelBoundary 0 30.30 8.55 14.19 22.37 40.58 2.73 28.40 13.39 22.16 12.76 19.37 0.00 0.00 14.83 4.45 4.36 3.93 19.86 37.27 11.70 12.23 0.00 3.50 56 ER11a ExonRegion 0 132.14 70.76 164.95 64.75 86.48 58.65 51.77 83.87 127.81 135.17 153.15 33.19 27.12 191.20 152.17 130.04 152.46 118.66 130.42 68.42 95.53 108.37 95.33 57 E11_Da NovelBoundary 0 73.57 8.42 16.88 16.88 30.56 8.35 19.30 21.56 30.64 32.85 8.69 0.00 0.00 17.07 0.00 28.45 8.70 19.44 45.27 11.82 14.33 2.82 26.55 58 E11a_E12a KnownJunction 0 161.88 85.64 160.46 75.98 82.68 54.80 54.36 104.78 133.82 121.28 126.19 54.77 46.43 181.29 141.79 213.36 162.41 138.37 198.69 65.45 61.65 173.96 120.53 59 E12_Aa NovelBoundary 0 73.57 8.95 22.97 32.93 55.18 16.13 25.22 12.73 25.12 17.43 16.85 12.60 0.00 17.31 6.30 19.65 21.97 28.98 40.19 5.69 6.30 0.00 7.60 60 ER12a ExonRegion 0 124.19 62.42 178.47 89.07 56.96 56.32 44.07 92.69 134.85 167.16 104.27 67.26 47.91 143.15 156.87 142.66 146.77 119.21 117.29 68.77 67.41 112.44 100.63 61 E12_Da NovelBoundary 0 32.75 9.14 25.72 8.02 8.57 21.86 9.67 17.87 19.21 25.57 26.59 5.25 6.82 12.18 28.18 22.05 16.27 16.00 25.13 6.33 0.00 6.00 12.04 62 E12a_E13a KnownJunction 0 160.10 85.05 212.00 110.94 56.45 64.57 31.49 91.18 132.81 197.70 107.55 45.16 25.65 134.50 170.84 155.00 111.73 101.98 96.85 101.05 86.92 103.55 125.40 63 I12 Intron 0 21.93 3.24 14.55 4.05 1.07 1.46 5.28 5.13 8.07 9.53 11.57 0.00 0.00 12.79 16.80 13.03 10.52 5.49 11.42 2.54 1.76 3.32 5.85 64 I12_AR1 ActiveIntronRegion 0 22.27 3.29 14.76 4.11 1.08 1.48 5.35 5.21 8.19 9.68 11.75 0.00 0.00 12.99 17.06 13.23 10.69 5.57 11.60 2.58 1.78 3.37 5.94 65 E13_Aa NovelBoundary 0 55.64 10.79 32.14 25.94 23.09 2.33 1.90 16.80 23.96 42.31 47.85 0.00 0.00 28.14 25.84 28.37 20.85 21.22 8.38 23.71 3.15 14.45 20.83 66 ER13a ExonRegion 0 88.33 73.17 176.35 85.86 55.31 68.42 45.52 80.61 124.54 139.35 121.07 38.46 35.08 156.05 170.87 153.25 108.54 97.97 82.04 92.35 85.85 101.36 114.00 67 E13a_E14a KnownJunction 0 13.48 3.35 7.69 14.85 0.00 13.80 2.25 6.37 21.50 4.35 6.63 0.00 6.82 2.94 4.45 7.95 0.00 14.09 21.18 3.20 0.00 0.00 0.00 68 E13a_E15a KnownJunction 0 64.97 76.83 187.22 83.14 77.76 50.99 53.79 77.18 96.85 142.85 115.66 41.86 32.14 127.26 178.75 91.43 140.25 102.39 68.52 77.85 86.12 73.11 65.47 69 E14_Aa NovelBoundary 1 548.69 561.54 376.10 495.21 472.92 461.33 907.32 406.88 397.04 408.36 185.20 251.78 274.82 194.72 190.99 535.07 484.71 497.23 411.96 740.93 315.37 661.75 1351.38 70 ER14a ExonRegion 0 3.00 1.13 0.78 1.48 0.00 4.69 0.88 2.64 6.38 0.00 1.07 4.09 1.43 1.76 7.66 2.15 0.00 3.49 8.41 1.89 0.00 0.00 0.00 71 E14_Da NovelBoundary 0 64.09 55.58 113.42 179.70 87.95 56.27 99.72 140.93 132.06 153.62 43.38 0.00 20.45 4.83 21.51 48.45 35.81 211.79 76.33 67.05 23.10 17.02 28.51 72 ER15a ExonRegion 0 92.72 61.79 176.69 97.90 56.87 55.76 44.93 104.75 114.35 133.30 132.34 40.50 44.77 145.27 184.47 144.81 101.93 141.69 109.14 89.03 75.55 95.07 99.35 73 E15a_E16a KnownJunction 0 95.87 55.32 161.41 99.85 66.98 68.20 72.74 110.61 136.80 124.75 162.25 57.92 32.95 175.47 202.86 212.08 103.51 113.42 110.69 71.40 65.85 104.34 84.25 74 ER16a ExonRegion 0 66.38 39.69 99.74 60.92 50.98 31.59 29.32 67.54 90.52 90.79 96.98 23.46 18.92 86.22 105.80 88.05 79.35 77.14 57.12 45.43 56.16 57.60 51.55 75 ER16b ExonRegion 0 4.23 0.00 1.23 1.36 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 2.90 2.97 0.00 1.85 0.00 0.00 0.00 0.00 2.94