Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SPNS1 Gene 0 54.21 43.48 220.27 84.85 56.05 81.04 57.76 108.32 92.65 168.89 93.12 28.82 37.69 118.85 167.38 135.68 98.90 189.22 133.74 94.46 145.57 114.80 154.79 2 334536 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 352260 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 452515 Transcript 0 0.00 0.00 6.00 1.47 0.00 2.21 0.00 0.00 1.07 0.00 0.00 0.00 0.00 2.47 0.00 3.85 0.00 12.23 0.00 0.00 0.00 0.00 0.00 5 323081 Transcript 0 3.63 0.00 17.33 8.66 4.24 13.17 0.00 7.15 4.46 11.09 0.00 0.00 6.82 18.84 0.00 0.00 0.00 12.85 4.24 5.94 17.42 8.21 7.51 6 311008 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 2.65 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 2.13 0.00 0.00 8.81 7 434933 Transcript 0 0.00 0.30 5.08 2.68 3.47 3.53 1.13 1.41 0.91 2.59 4.87 0.00 1.39 5.77 3.55 5.72 7.34 0.00 3.19 4.02 3.18 4.55 1.52 8 IG12_AR2 ActiveIntergenicRegion 0 7.34 2.03 5.59 1.63 6.00 2.20 4.67 5.42 5.18 4.52 3.10 5.66 0.77 3.12 7.21 5.93 3.73 5.94 7.41 4.48 8.24 2.92 5.48 9 ER1a ExonRegion 1 5.88 4.52 6.63 2.12 4.46 5.84 5.25 2.75 1.10 7.69 5.73 0.00 0.00 5.05 39.54 5.06 9.17 8.69 5.78 0.95 13.22 14.43 9.46 10 ER1b ExonRegion 1 29.29 13.48 59.23 17.48 17.00 47.26 28.23 21.38 17.93 43.36 37.26 0.00 0.00 50.87 111.46 107.91 41.74 128.24 107.02 22.65 89.43 77.86 194.77 11 E1_Da KnownBoundary 0 3.41 5.66 74.30 25.87 3.31 13.06 10.29 32.16 25.26 49.43 9.32 0.00 0.00 12.07 54.39 10.85 0.00 174.93 52.61 5.75 23.48 11.33 35.43 12 E1a_E1c KnownJunction 0 0.00 0.00 6.00 1.47 0.00 2.21 0.00 0.00 1.07 0.00 0.00 0.00 0.00 2.47 0.00 3.85 0.00 12.23 0.00 0.00 0.00 0.00 0.00 13 ER1c ExonRegion 0 7.91 2.71 75.27 27.36 8.12 14.52 6.68 43.96 33.70 66.71 41.30 3.07 5.62 65.07 87.36 82.28 50.10 158.64 92.58 50.65 81.99 57.86 133.33 14 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1b_E1c NovelJunction 0 10.08 12.96 49.82 21.54 14.86 51.96 20.27 33.68 29.22 65.19 45.85 0.00 7.14 59.57 38.45 20.59 35.25 66.70 29.08 28.95 63.94 26.33 30.82 16 E1_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E1b_E1d KnownJunction 0 3.63 0.00 17.33 8.66 4.24 13.17 0.00 7.15 4.46 11.09 0.00 0.00 6.82 18.84 0.00 0.00 0.00 12.85 4.24 5.94 17.42 8.21 7.51 18 ER1d ExonRegion 1 10.58 6.10 64.94 19.08 13.38 53.18 22.51 32.84 25.94 57.35 42.52 0.00 4.69 53.60 43.52 23.78 36.31 53.58 25.48 38.30 72.72 27.09 44.05 19 ER1e ExonRegion 0 16.20 13.14 65.07 18.72 10.67 55.48 43.45 29.68 30.82 68.38 38.30 2.74 16.28 66.68 87.94 35.46 48.15 64.40 35.37 34.68 73.68 41.43 51.51 20 E1_Ad KnownBoundary 0 37.04 33.88 118.48 29.43 20.20 63.77 49.59 48.30 55.38 103.28 69.60 6.15 19.64 94.53 102.48 54.69 77.51 123.66 51.20 67.18 109.90 48.07 107.13 21 ER1f ExonRegion 0 39.70 37.58 142.06 45.98 45.34 57.08 42.04 65.05 72.48 139.69 86.33 17.83 18.21 135.60 134.84 96.54 98.14 135.09 111.36 76.18 151.23 99.62 98.97 22 E1c_E2a KnownJunction 0 79.05 59.92 299.25 122.53 89.30 124.76 120.21 124.95 117.30 246.78 113.92 55.37 25.00 140.15 267.38 194.05 125.85 253.74 176.57 118.12 262.62 199.01 173.54 23 E1c_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER2a ExonRegion 0 39.48 56.85 334.80 141.35 87.04 116.59 93.32 165.38 152.61 264.74 174.14 68.81 37.24 167.78 240.45 209.85 160.54 275.65 251.45 152.74 265.61 207.59 252.33 25 E2a_E3a KnownJunction 0 58.31 69.72 389.61 196.15 136.25 111.98 120.43 221.59 193.60 303.59 196.52 82.53 55.19 171.88 312.13 271.55 162.51 332.25 343.63 176.67 300.49 218.79 313.79 26 E2a_E4a NovelJunction 0 0.00 0.00 2.84 3.26 8.40 5.11 1.81 6.16 11.81 6.96 2.58 0.00 0.00 0.00 4.45 0.00 0.00 1.78 0.00 3.07 11.68 0.00 0.00 27 ER3a ExonRegion 0 54.15 59.94 367.93 145.92 92.38 104.97 83.39 163.95 153.42 249.54 184.19 48.86 56.52 191.50 265.20 247.77 167.82 317.84 261.43 169.05 268.10 180.51 218.04 28 E3_Da NovelBoundary 0 38.90 8.42 36.10 16.91 15.45 5.17 10.16 31.75 31.37 41.39 30.01 6.30 13.64 31.61 13.35 76.90 39.93 87.88 57.88 27.55 31.94 62.40 64.28 29 E3a_E4a KnownJunction 0 33.93 52.95 380.50 124.96 88.96 119.59 74.72 148.81 135.73 219.27 88.81 61.07 66.23 120.08 193.09 168.76 122.49 249.43 159.91 125.53 191.02 147.94 136.75 30 I3 Intron 0 25.74 4.98 14.80 3.64 9.33 7.78 5.24 9.47 9.54 11.76 12.38 7.80 17.14 18.36 22.33 20.17 16.49 23.39 20.42 10.23 17.65 15.91 18.27 31 I3_AR1 ActiveIntronRegion 0 34.31 5.39 18.58 3.57 10.85 9.69 6.15 12.89 12.21 15.21 14.11 9.26 21.72 20.45 24.81 25.42 17.93 29.48 26.98 12.32 21.55 19.63 22.71 32 E4_Aa NovelBoundary 0 13.63 8.42 31.81 16.08 23.68 0.00 4.11 9.12 8.97 19.39 18.11 0.00 25.49 21.07 22.87 27.94 35.81 42.28 25.88 11.70 32.49 16.41 30.05 33 ER4a ExonRegion 0 84.84 84.38 309.47 124.76 103.42 140.84 113.64 143.19 142.17 231.20 132.79 63.69 56.06 176.16 213.93 214.31 149.37 307.27 208.66 133.47 218.62 145.16 239.57 34 E4a_E5a KnownJunction 0 81.27 108.53 323.97 144.27 144.99 180.58 135.89 197.98 159.20 313.05 107.29 88.98 84.09 132.26 176.40 189.27 145.39 284.99 215.72 122.40 228.64 151.49 222.80 35 ER5a ExonRegion 0 85.96 87.93 281.41 96.38 90.90 133.40 116.94 121.77 128.06 221.68 119.03 58.09 68.88 114.34 172.30 146.65 137.16 183.75 139.35 78.60 205.04 167.30 160.90 36 E5a_E6a KnownJunction 0 81.27 95.44 262.11 88.30 60.19 147.70 133.46 134.23 116.87 218.28 119.87 73.07 61.20 105.54 204.83 121.16 215.99 200.92 190.78 116.46 134.12 138.02 160.91 37 ER5b ExonRegion 0 0.00 0.30 5.08 2.68 3.47 3.53 1.13 1.41 0.91 2.59 4.87 0.00 1.39 5.77 3.55 5.72 7.34 0.00 3.19 4.02 3.18 4.55 1.52 38 I5 Intron 0 34.47 6.24 13.16 4.34 15.36 9.06 8.48 8.25 8.60 9.81 12.13 8.30 2.06 18.15 20.67 21.43 12.34 11.90 12.33 6.25 13.82 19.19 23.13 39 I5_AR1 ActiveIntronRegion 0 15.96 6.13 0.69 0.00 7.04 2.76 3.99 0.00 0.70 0.00 5.11 5.39 0.00 12.13 17.97 19.00 8.73 1.38 8.42 4.02 6.64 9.40 18.82 40 I5_SR1 SilentIntronRegion 1 17.46 4.58 0.00 0.00 18.06 2.75 5.96 0.00 0.00 0.00 24.64 5.35 5.79 12.11 18.18 11.15 9.90 0.00 7.17 1.60 13.22 7.81 28.63 41 I5_AR2 ActiveIntronRegion 0 55.48 7.03 27.88 9.36 20.82 16.38 12.97 17.81 18.02 21.18 12.81 11.74 2.23 25.27 23.90 27.39 16.17 24.63 17.44 9.81 19.66 31.22 24.54 42 E6_Aa NovelBoundary 0 53.86 15.39 42.96 17.51 4.07 15.90 12.59 51.92 20.54 30.43 10.11 23.56 20.45 40.26 34.37 30.59 9.44 45.68 8.38 14.38 19.09 25.41 30.30 43 ER6a ExonRegion 0 79.66 68.63 324.30 142.21 94.35 141.22 91.27 169.07 146.49 283.86 129.07 52.93 57.63 147.52 203.11 183.91 149.63 222.21 153.27 134.84 183.16 191.20 208.14 44 E6_Da NovelBoundary 0 52.23 12.04 71.17 48.21 26.66 16.81 34.31 50.32 37.44 42.76 20.27 7.05 0.00 23.49 31.89 45.89 4.21 38.22 32.47 20.01 37.62 36.80 31.93 45 E6a_E7a KnownJunction 0 70.83 60.65 343.01 194.75 114.26 169.56 73.49 203.19 158.79 320.79 145.88 61.52 52.27 173.17 180.98 304.28 196.63 324.50 211.11 142.85 159.76 261.71 365.78 46 E6a_E8a KnownJunction 0 7.56 2.96 43.55 15.48 19.69 37.71 24.20 19.59 20.78 13.35 12.21 6.30 0.00 21.78 38.07 8.72 9.16 21.02 8.94 10.61 7.60 14.27 19.55 47 I6 Intron 0 35.98 12.74 41.50 21.81 23.45 7.22 14.45 25.35 16.80 22.63 11.07 3.10 1.38 21.60 15.58 22.34 15.37 25.49 15.39 16.37 26.42 17.90 14.19 48 I6_AR1 ActiveIntronRegion 0 36.24 12.82 41.78 21.96 23.61 7.27 14.55 25.53 16.91 22.79 11.15 3.12 1.39 21.76 15.67 22.50 15.47 25.67 15.50 16.48 26.60 18.02 14.29 49 E7_Aa NovelBoundary 0 36.52 11.51 45.27 15.72 23.17 40.72 16.47 36.06 24.07 36.83 9.32 0.00 25.16 31.08 18.79 35.03 4.30 31.79 35.86 14.51 16.49 5.27 28.26 50 ER7a ExonRegion 0 93.82 72.34 321.67 127.68 91.78 129.74 80.57 182.24 146.62 288.51 142.75 36.94 45.55 158.13 215.77 204.28 148.31 313.82 181.12 132.24 179.07 215.36 217.27 51 E7_Da NovelBoundary 0 34.38 12.43 22.18 13.62 12.48 15.79 8.39 11.38 14.87 21.17 7.95 0.00 0.00 9.89 13.35 12.05 0.00 12.93 7.91 21.48 20.26 8.39 4.35 52 E7a_E8a KnownJunction 1 138.25 115.77 315.99 134.12 103.99 205.34 105.15 137.15 115.54 230.50 174.31 18.91 57.46 162.22 169.97 189.78 145.86 271.64 235.58 103.61 201.33 162.27 192.75 53 I7 Intron 0 20.58 5.56 28.97 11.44 17.34 12.51 7.45 14.94 23.54 20.43 10.88 1.22 3.22 11.86 14.96 22.31 11.82 30.56 8.70 6.90 18.79 13.87 15.05 54 I7_AR1 ActiveIntronRegion 0 21.21 5.83 31.34 12.50 18.78 13.24 8.05 15.79 25.07 22.07 11.89 1.34 3.15 12.58 16.05 23.32 11.91 32.98 8.93 7.30 20.25 14.55 16.37 55 E8_Aa NovelBoundary 0 50.16 5.79 13.87 8.52 7.56 21.41 16.30 17.17 22.02 22.75 9.84 12.60 0.00 14.95 21.63 23.41 4.21 32.33 20.80 12.46 13.90 14.88 19.29 56 I7_AR2 ActiveIntronRegion 0 14.31 3.17 6.22 1.09 3.42 5.72 1.64 7.12 9.09 4.73 1.01 0.00 4.13 5.07 4.64 12.84 11.09 6.95 6.75 2.98 4.76 7.50 2.11 57 ER8a ExonRegion 0 105.32 56.62 310.97 116.33 80.36 109.52 78.48 153.48 120.77 242.49 128.02 48.26 77.11 163.42 260.98 210.02 137.14 270.79 195.60 130.73 205.52 159.16 214.05 58 E8_Da NovelBoundary 0 13.34 3.22 6.86 5.76 31.92 13.00 10.16 7.60 6.77 4.62 0.00 0.00 0.00 7.24 9.52 20.17 4.77 14.14 9.04 3.26 6.30 13.66 0.00 59 E8a_E9a KnownJunction 0 100.09 55.98 409.51 147.07 85.65 118.00 116.46 168.69 128.76 253.34 124.45 32.56 32.63 212.90 269.24 210.97 163.91 243.54 222.22 168.55 236.85 162.02 230.65 60 I8 Intron 0 22.14 6.65 0.00 0.00 14.00 10.79 9.52 3.32 2.34 2.18 6.32 6.99 10.10 2.81 15.29 21.38 10.79 11.89 6.25 9.74 7.20 8.17 7.68 61 I8_SR1 SilentIntronRegion 0 22.72 6.82 0.00 0.00 14.36 11.08 9.77 3.39 2.41 2.23 6.49 7.18 10.31 2.88 15.69 21.94 11.08 12.20 6.41 9.99 7.39 8.39 7.88 62 E9_Aa NovelBoundary 0 27.63 2.89 27.53 13.09 15.96 15.39 15.90 5.42 14.32 18.62 4.95 0.00 12.34 7.00 6.18 11.45 4.77 9.70 8.00 9.20 5.13 7.78 12.12 63 ER9a ExonRegion 1 101.56 66.18 385.62 146.63 64.83 130.59 109.77 196.65 144.81 259.17 149.80 25.91 74.26 167.65 216.98 213.50 140.49 257.90 194.50 139.84 217.43 139.06 230.44 64 E9a_E10a KnownJunction 0 164.55 119.12 432.54 173.54 63.16 184.67 107.89 215.43 163.08 275.82 164.73 70.07 128.40 148.27 316.34 313.08 143.52 273.47 253.28 137.29 220.24 175.07 277.86 65 I9 Intron 0 11.24 1.16 15.93 2.70 3.04 6.95 4.02 5.86 4.89 5.51 6.23 1.35 2.20 3.31 9.19 4.52 3.75 8.18 5.44 6.05 6.27 5.53 5.57 66 I9_SR1 SilentIntronRegion 0 11.41 1.17 16.15 2.74 3.09 7.06 4.08 5.94 4.96 5.59 6.32 1.37 2.23 3.36 9.33 4.59 3.81 8.30 5.52 6.14 6.36 5.61 5.65 67 ER10a ExonRegion 0 61.42 43.28 339.16 120.42 34.78 109.55 51.22 155.47 119.73 178.37 90.10 41.02 66.13 130.86 193.04 127.41 97.09 131.23 120.40 129.64 144.80 80.27 154.10 68 E10a_E11a KnownJunction 0 42.38 47.23 447.88 157.56 23.17 92.22 49.73 205.53 108.13 176.62 53.33 55.22 71.10 140.33 131.16 122.45 103.23 162.95 86.21 147.97 120.16 59.27 127.87 69 E10a_E12a NovelJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 2.01 1.13 0.00 9.53 0.00 0.00 10.60 10.75 15.38 8.98 0.00 0.00 0.00 0.00 3.12 3.16 70 ER11a ExonRegion 0 37.80 39.11 267.89 97.74 51.27 67.05 45.07 124.23 87.05 148.12 65.03 15.96 39.18 97.63 175.66 106.55 66.00 152.13 98.43 90.60 101.93 81.96 132.87 71 E11_Da NovelBoundary 1 3.48 0.00 16.17 3.53 0.00 0.00 3.80 10.31 8.16 9.86 5.26 6.30 32.14 9.77 4.94 8.37 4.58 11.11 14.21 3.07 2.97 0.00 21.51 72 E11a_E12a KnownJunction 0 37.19 32.03 170.99 71.25 103.06 81.94 75.30 94.88 79.46 117.84 46.91 19.66 53.24 95.89 143.52 52.64 60.87 154.00 43.39 72.48 75.86 55.84 72.30 73 I11_AR1 ActiveIntronRegion 0 5.29 2.03 17.61 4.34 9.29 6.71 9.58 13.83 11.73 16.45 4.27 10.94 8.15 4.32 14.35 15.25 3.30 17.12 29.93 2.13 13.74 12.99 23.49 74 ER12a ExonRegion 0 40.31 25.79 107.18 44.94 35.13 38.78 28.93 57.06 46.73 89.23 43.48 11.59 18.14 70.04 111.23 60.59 45.59 102.23 64.12 52.07 64.58 56.75 75.91 75 ER12b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 2.65 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 2.13 0.00 0.00 8.81 76 IG13 Intergenic 0 5.07 2.62 24.21 11.59 8.37 10.13 3.89 12.80 14.57 16.05 5.34 0.66 0.00 8.85 3.83 11.49 7.90 12.85 9.38 3.13 17.04 6.90 15.68 77 IG13_AR1 ActiveIntergenicRegion 0 5.10 2.64 24.39 11.68 8.44 10.18 3.92 12.90 14.68 16.17 5.38 0.66 0.00 8.91 3.86 11.58 7.96 12.93 9.45 3.16 17.16 6.96 15.79